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The map label for this gene is scpB [H]

Identifier: 83593109

GI number: 83593109

Start: 2065757

End: 2066476

Strand: Reverse

Name: scpB [H]

Synonym: Rru_A1774

Alternate gene names: 83593109

Gene position: 2066476-2065757 (Counterclockwise)

Preceding gene: 83593110

Following gene: 83593108

Centisome position: 47.47

GC content: 69.72

Gene sequence:

>720_bases
ATGAAACCGGATATCGACACGACGCTCCCCTTTGCCGAGGACGGAGCCGATTTCGCCCTGATCCGCCTGATCGAGGCCCT
GTTGTTCGCCGCGCCCACCCCCTTGAGCGTGGCCGATCTGGCTTCGCGCCTGCCGGCGGGGGCCGATGTCGCGGCGCTTC
TTGGGGCCTTGGCCGATCATTACCGCCAGCGCGGGGTGGTGCTGGTTGAAAGCGGCGGACGCTGGGCCTTTCGCACGGCG
GCCGATCTGGCCGGCCAGCTGCGCCTGGAAACCACCGAACCGCGTCGCCTGTCGCGGGCGGCGATCGAGACCTTGGCGAT
CATCGCCTATCACCAGCCGGTGACCCGGGCCGATATCGAGGAGATCCGGGGCGTCGCCCTGTCCAAGGGCACGCTTGATC
TTTTGCTCGAGGCCGGCTGGATCCACCCCTGTGGCCGCCGCCAGACCGCTGGACGACCGCTGACCTGGGGCACCACGGAG
GGCTTCCTCGACCATTTCGGCCTGGGCTCGGTCGATGATCTGCCCGGGGTCGAGGATCTGAAGGCCGCCGGCCTGCTTGA
TCGCCGCCCGGCGCTGGCCGCCTATGGCACCCATGCCCGCGACGGCGATGATATCCTGGCCGATGTCGAGGACGAGGGCA
CGCTGACCGGACAGCCCGGACGGCGCGAAACCGACCAGCTCGACCTGCTGCGCCCGCCGCCCCGACGGCCGAGGGGCTAA

Upstream 100 bases:

>100_bases
TGGCCAAGCAAGGCGTTCTCGACCTGCGCCAAGACGGTGGGGTTTATGCGCCGATCACCGTGCGGCCGGTGGCGGCGGGC
AACAGGACAGGCGTGGCGCC

Downstream 100 bases:

>100_bases
AAGGCGGCCGATCTGGGAAAGCCCTATCCCAGCGAGCGAAGGGTGCTATCGTCGGCGGTTGGCTTTGGAGTCGAAAAACA
ACCCCTTGCCGCCGGTCTTG

Product: condensin subunit ScpB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 239; Mature: 239

Protein sequence:

>239_residues
MKPDIDTTLPFAEDGADFALIRLIEALLFAAPTPLSVADLASRLPAGADVAALLGALADHYRQRGVVLVESGGRWAFRTA
ADLAGQLRLETTEPRRLSRAAIETLAIIAYHQPVTRADIEEIRGVALSKGTLDLLLEAGWIHPCGRRQTAGRPLTWGTTE
GFLDHFGLGSVDDLPGVEDLKAAGLLDRRPALAAYGTHARDGDDILADVEDEGTLTGQPGRRETDQLDLLRPPPRRPRG

Sequences:

>Translated_239_residues
MKPDIDTTLPFAEDGADFALIRLIEALLFAAPTPLSVADLASRLPAGADVAALLGALADHYRQRGVVLVESGGRWAFRTA
ADLAGQLRLETTEPRRLSRAAIETLAIIAYHQPVTRADIEEIRGVALSKGTLDLLLEAGWIHPCGRRQTAGRPLTWGTTE
GFLDHFGLGSVDDLPGVEDLKAAGLLDRRPALAAYGTHARDGDDILADVEDEGTLTGQPGRRETDQLDLLRPPPRRPRG
>Mature_239_residues
MKPDIDTTLPFAEDGADFALIRLIEALLFAAPTPLSVADLASRLPAGADVAALLGALADHYRQRGVVLVESGGRWAFRTA
ADLAGQLRLETTEPRRLSRAAIETLAIIAYHQPVTRADIEEIRGVALSKGTLDLLLEAGWIHPCGRRQTAGRPLTWGTTE
GFLDHFGLGSVDDLPGVEDLKAAGLLDRRPALAAYGTHARDGDDILADVEDEGTLTGQPGRRETDQLDLLRPPPRRPRG

Specific function: Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing smc and scpA that pull DNA away from mid-cell into both cell halves [H]

COG id: COG1386

COG function: function code K; Predicted transcriptional regulator containing the HTH domain

Gene ontology:

Cell location: Cytoplasm. Note=Associated with two foci at the outer edges of the nucleoid region in young cells, and at four foci within both cell halves in older cells (By similarity) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the scpB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005234
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04079 DUF387 [H]

EC number: NA

Molecular weight: Translated: 25704; Mature: 25704

Theoretical pI: Translated: 4.88; Mature: 4.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPDIDTTLPFAEDGADFALIRLIEALLFAAPTPLSVADLASRLPAGADVAALLGALADH
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHH
YRQRGVVLVESGGRWAFRTAADLAGQLRLETTEPRRLSRAAIETLAIIAYHQPVTRADIE
HHHCCEEEEECCCCEEEHHHHHHHCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCHHHHH
EIRGVALSKGTLDLLLEAGWIHPCGRRQTAGRPLTWGTTEGFLDHFGLGSVDDLPGVEDL
HHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCHHHH
KAAGLLDRRPALAAYGTHARDGDDILADVEDEGTLTGQPGRRETDQLDLLRPPPRRPRG
HHHCCCCCCCCHHHCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MKPDIDTTLPFAEDGADFALIRLIEALLFAAPTPLSVADLASRLPAGADVAALLGALADH
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHH
YRQRGVVLVESGGRWAFRTAADLAGQLRLETTEPRRLSRAAIETLAIIAYHQPVTRADIE
HHHCCEEEEECCCCEEEHHHHHHHCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCHHHHH
EIRGVALSKGTLDLLLEAGWIHPCGRRQTAGRPLTWGTTEGFLDHFGLGSVDDLPGVEDL
HHHCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCHHHH
KAAGLLDRRPALAAYGTHARDGDDILADVEDEGTLTGQPGRRETDQLDLLRPPPRRPRG
HHHCCCCCCCCHHHCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA