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The map label for this gene is sodB [H]

Identifier: 83593095

GI number: 83593095

Start: 2053286

End: 2053969

Strand: Direct

Name: sodB [H]

Synonym: Rru_A1760

Alternate gene names: 83593095

Gene position: 2053286-2053969 (Clockwise)

Preceding gene: 83593092

Following gene: 83593096

Centisome position: 47.17

GC content: 60.38

Gene sequence:

>684_bases
ATGGCGTATATCGCCTGCGAACCCGCCATCGGTTTTCCCGACGATCGGGAGAGCGGCGACACAAACAATCTAGGAGAGAT
CGACATGGCTTTCGAACTGCCGCCCCTGCCCTTCGCCAAGGAGGCCCTGGAGCCGCATATTTCAGCCAAGACTTTCGAAT
TTCATCATGGCAAGCATCATAACGCCTATGTCACCACCCTCAATTCGTTGATCAAAGATACCCCCCTGGCCGATAAGTCG
CTTGAGGATATCATTACCACCGTGGCCGGCGACGCCGCCAAGACCCCGGTCTTCAACAATGCCGCCCAGGTGTGGAACCA
CACGTTTTTCTGGAACAGCCTGTCGCCGACCGGCGGCGGCCAGCCGACCGGCGCGGCCAAAGAGGCGATCGACGGCGCCT
TCGGCTCGCTCGACGCCTTCAAGGAGCAGTTCAAGCAGGCCGGCGTCACCCAATTCGGCAGTGGCTGGGCTTGGCTGGTG
GTGGACGGCGGCAAGCTGTCGATCGCCAAGACGCCCAATGCCGAATTGCCCCTGACCAAGGGCCAGACCGCCGTTCTGAC
CTGCGATGTCTGGGAGCATGCCTATTATCTGGATTACCAGAATCGCCGCCCCGACTTCCTGCAGACCTTCCTGGATCACC
TCGTGAACTGGGACTTCCTGGCGGCCAATCTGGCCAAGGCCTGA

Upstream 100 bases:

>100_bases
CCATCGGAACGTCCTTCTTCGTGGTCCGTTGGGCGTAAAGAGGGGGCGCCCCAGGTGATTTTGCCCGATACCCCTTCAAA
TTCGTCGGGAACCCCCATAA

Downstream 100 bases:

>100_bases
TCGGCGCCGGGCGCGCGGCGGCGAAACGGCTGTTTGGCCCCCGCAAAGGGGCCGGCGCGTCGCCGTCGCCGCCCGCCACG
GTTGCCCCGGCTGCCCGGTT

Product: superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 227; Mature: 226

Protein sequence:

>227_residues
MAYIACEPAIGFPDDRESGDTNNLGEIDMAFELPPLPFAKEALEPHISAKTFEFHHGKHHNAYVTTLNSLIKDTPLADKS
LEDIITTVAGDAAKTPVFNNAAQVWNHTFFWNSLSPTGGGQPTGAAKEAIDGAFGSLDAFKEQFKQAGVTQFGSGWAWLV
VDGGKLSIAKTPNAELPLTKGQTAVLTCDVWEHAYYLDYQNRRPDFLQTFLDHLVNWDFLAANLAKA

Sequences:

>Translated_227_residues
MAYIACEPAIGFPDDRESGDTNNLGEIDMAFELPPLPFAKEALEPHISAKTFEFHHGKHHNAYVTTLNSLIKDTPLADKS
LEDIITTVAGDAAKTPVFNNAAQVWNHTFFWNSLSPTGGGQPTGAAKEAIDGAFGSLDAFKEQFKQAGVTQFGSGWAWLV
VDGGKLSIAKTPNAELPLTKGQTAVLTCDVWEHAYYLDYQNRRPDFLQTFLDHLVNWDFLAANLAKA
>Mature_226_residues
AYIACEPAIGFPDDRESGDTNNLGEIDMAFELPPLPFAKEALEPHISAKTFEFHHGKHHNAYVTTLNSLIKDTPLADKSL
EDIITTVAGDAAKTPVFNNAAQVWNHTFFWNSLSPTGGGQPTGAAKEAIDGAFGSLDAFKEQFKQAGVTQFGSGWAWLVV
DGGKLSIAKTPNAELPLTKGQTAVLTCDVWEHAYYLDYQNRRPDFLQTFLDHLVNWDFLAANLAKA

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=189, Percent_Identity=43.9153439153439, Blast_Score=146, Evalue=1e-35,
Organism=Homo sapiens, GI67782305, Length=189, Percent_Identity=43.9153439153439, Blast_Score=146, Evalue=1e-35,
Organism=Homo sapiens, GI67782309, Length=189, Percent_Identity=35.4497354497354, Blast_Score=104, Evalue=5e-23,
Organism=Escherichia coli, GI1787946, Length=198, Percent_Identity=59.0909090909091, Blast_Score=236, Evalue=1e-63,
Organism=Escherichia coli, GI1790342, Length=206, Percent_Identity=43.2038834951456, Blast_Score=165, Evalue=2e-42,
Organism=Caenorhabditis elegans, GI17506561, Length=202, Percent_Identity=36.1386138613861, Blast_Score=115, Evalue=2e-26,
Organism=Caenorhabditis elegans, GI17569479, Length=197, Percent_Identity=35.5329949238579, Blast_Score=107, Evalue=5e-24,
Organism=Saccharomyces cerevisiae, GI6321796, Length=207, Percent_Identity=37.1980676328502, Blast_Score=107, Evalue=2e-24,
Organism=Drosophila melanogaster, GI17136812, Length=198, Percent_Identity=39.3939393939394, Blast_Score=125, Evalue=2e-29,

Paralogues:

None

Copy number: 2020 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 900 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 24827; Mature: 24696

Theoretical pI: Translated: 4.76; Mature: 4.76

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAYIACEPAIGFPDDRESGDTNNLGEIDMAFELPPLPFAKEALEPHISAKTFEFHHGKHH
CCEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHCCCCCCEEEEECCCCCC
NAYVTTLNSLIKDTPLADKSLEDIITTVAGDAAKTPVFNNAAQVWNHTFFWNSLSPTGGG
CHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHCCEEEECCCCCCCCC
QPTGAAKEAIDGAFGSLDAFKEQFKQAGVTQFGSGWAWLVVDGGKLSIAKTPNAELPLTK
CCCCHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEECCEEEEEECCCCCCCCCC
GQTAVLTCDVWEHAYYLDYQNRRPDFLQTFLDHLVNWDFLAANLAKA
CCEEEEEEECCCCEEEEECCCCCHHHHHHHHHHHCCHHHHHHHHHCC
>Mature Secondary Structure 
AYIACEPAIGFPDDRESGDTNNLGEIDMAFELPPLPFAKEALEPHISAKTFEFHHGKHH
CEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHCCCCCCEEEEECCCCCC
NAYVTTLNSLIKDTPLADKSLEDIITTVAGDAAKTPVFNNAAQVWNHTFFWNSLSPTGGG
CHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHCCEEEECCCCCCCCC
QPTGAAKEAIDGAFGSLDAFKEQFKQAGVTQFGSGWAWLVVDGGKLSIAKTPNAELPLTK
CCCCHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEECCEEEEEECCCCCCCCCC
GQTAVLTCDVWEHAYYLDYQNRRPDFLQTFLDHLVNWDFLAANLAKA
CCEEEEEEECCCCEEEEECCCCCHHHHHHHHHHHCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231; 9298645 [H]