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The map label for this gene is yabF [C]

Identifier: 83593048

GI number: 83593048

Start: 2005872

End: 2006678

Strand: Reverse

Name: yabF [C]

Synonym: Rru_A1713

Alternate gene names: 83593048

Gene position: 2006678-2005872 (Counterclockwise)

Preceding gene: 83593050

Following gene: 83593047

Centisome position: 46.1

GC content: 64.31

Gene sequence:

>807_bases
ATGAAGATTTTGCTGGTTTTCGCCCACCCCGAACCGCGCTCGCTCAATGGCGCCTTGCGCGATGTCGCCGTGACCGAGCT
TCGCGCCCAAGGTCACGAGGTGCGGGTTTCAGACCTTTACGCGATGGGCTGGAAGGCGGCGATCGACCGCGACGACTTTC
CGGCTTTGCCCCCAAAGGCGCGTTTGCAAGTCGCCGCCGCCTCGGGCGAAGCCCTTGCCGCCCAGGCCCTGACCGGGGAT
GTGACGGCCGAGCAGGACAAGCTGCTGTGGGCCGATCTCCTGATCTTGCAGTTTCCTTTGTGGTGGTATGCGATGCCAGC
CATTCTCAAGGGCTGGGTCGACCGTGTCTATGCCTACGGCTTCGCCTATGGCGTTGGCGAGCACAGCGACAGGCGGTGGG
GCGAGCGTTTCGGCGAAGGTCGGCTTGCCGGGAAACGCGCCATGCTGATCGTGACCACCGGCGGCTGGGAAGAGCATTAT
TCGGCGCGCGGGATCAATGGCCCGATCGACGACCTGCTGTTCCCCATCACCCATGGCATCCTTTTTTATCCGGGCTATGC
GGTGCTGCCGTCCTTCGTCGCCTATCGGGTCGATCGCCTAGACGGCCCCGGCTTCGACGCCCTGGCCGAGCGCTTGCGCC
AACGCCTGCGCGGCCTTTCCACCACGCCCCCCATCCCGTTCCGACGGCAAAACGGCGGCGAGTATGCCATCCCGAGCCTG
GAATTGCGCCCGGACCTAGGCGCGGCGGGGGCGATGGGCTTCGCGCTGCATCAAGAAGACGGTGATCATGTTGATAAAGC
TCGATAA

Upstream 100 bases:

>100_bases
ATTTTTCGGCTCAATGAAATCCATTTTCCATGGATAGCGGATGAATGCGCCCGGATCTAGGTTGGGGATCGGTTTTTCTC
TGGATCGCATCGGTGCCGTC

Downstream 100 bases:

>100_bases
AGGTCGAAGCGATAGTCCGCCTATACCCTACCTCCAGGGTCGGCAAACATTGAACCTCGTCTTGTTGGGCTATATACTAA
ATAAGCAGCATCTATCGCGA

Product: NAD(P)H dehydrogenase (quinone)

Products: NAD+; NADP+; reduced acceptor

Alternate protein names: NA

Number of amino acids: Translated: 268; Mature: 268

Protein sequence:

>268_residues
MKILLVFAHPEPRSLNGALRDVAVTELRAQGHEVRVSDLYAMGWKAAIDRDDFPALPPKARLQVAAASGEALAAQALTGD
VTAEQDKLLWADLLILQFPLWWYAMPAILKGWVDRVYAYGFAYGVGEHSDRRWGERFGEGRLAGKRAMLIVTTGGWEEHY
SARGINGPIDDLLFPITHGILFYPGYAVLPSFVAYRVDRLDGPGFDALAERLRQRLRGLSTTPPIPFRRQNGGEYAIPSL
ELRPDLGAAGAMGFALHQEDGDHVDKAR

Sequences:

>Translated_268_residues
MKILLVFAHPEPRSLNGALRDVAVTELRAQGHEVRVSDLYAMGWKAAIDRDDFPALPPKARLQVAAASGEALAAQALTGD
VTAEQDKLLWADLLILQFPLWWYAMPAILKGWVDRVYAYGFAYGVGEHSDRRWGERFGEGRLAGKRAMLIVTTGGWEEHY
SARGINGPIDDLLFPITHGILFYPGYAVLPSFVAYRVDRLDGPGFDALAERLRQRLRGLSTTPPIPFRRQNGGEYAIPSL
ELRPDLGAAGAMGFALHQEDGDHVDKAR
>Mature_268_residues
MKILLVFAHPEPRSLNGALRDVAVTELRAQGHEVRVSDLYAMGWKAAIDRDDFPALPPKARLQVAAASGEALAAQALTGD
VTAEQDKLLWADLLILQFPLWWYAMPAILKGWVDRVYAYGFAYGVGEHSDRRWGERFGEGRLAGKRAMLIVTTGGWEEHY
SARGINGPIDDLLFPITHGILFYPGYAVLPSFVAYRVDRLDGPGFDALAERLRQRLRGLSTTPPIPFRRQNGGEYAIPSL
ELRPDLGAAGAMGFALHQEDGDHVDKAR

Specific function: Unknown

COG id: COG2249

COG function: function code R; Putative NADPH-quinone reductase (modulator of drug activity B)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the NAD(P)H dehydrogenase (quinone) family [H]

Homologues:

Organism=Homo sapiens, GI156564357, Length=226, Percent_Identity=40.2654867256637, Blast_Score=162, Evalue=4e-40,
Organism=Homo sapiens, GI4505415, Length=225, Percent_Identity=37.7777777777778, Blast_Score=127, Evalue=1e-29,
Organism=Homo sapiens, GI70995396, Length=129, Percent_Identity=44.1860465116279, Blast_Score=88, Evalue=6e-18,
Organism=Escherichia coli, GI1786231, Length=137, Percent_Identity=34.3065693430657, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1787129, Length=174, Percent_Identity=28.1609195402299, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003680 [H]

Pfam domain/function: PF02525 Flavodoxin_2 [H]

EC number: 1.6.99.2

Molecular weight: Translated: 29634; Mature: 29634

Theoretical pI: Translated: 6.64; Mature: 6.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKILLVFAHPEPRSLNGALRDVAVTELRAQGHEVRVSDLYAMGWKAAIDRDDFPALPPKA
CEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEHHHHHHHCHHHCCCCCCCCCCCCCC
RLQVAAASGEALAAQALTGDVTAEQDKLLWADLLILQFPLWWYAMPAILKGWVDRVYAYG
EEEEEECCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FAYGVGEHSDRRWGERFGEGRLAGKRAMLIVTTGGWEEHYSARGINGPIDDLLFPITHGI
HHHCCCCCCHHHHHHHHCCCCCCCCEEEEEEEECCCHHHHCCCCCCCCHHHHHHHHHHHH
LFYPGYAVLPSFVAYRVDRLDGPGFDALAERLRQRLRGLSTTPPIPFRRQNGGEYAIPSL
HHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCCE
ELRPDLGAAGAMGFALHQEDGDHVDKAR
EECCCCCCCCCCEEEEECCCCCCCCCCC
>Mature Secondary Structure
MKILLVFAHPEPRSLNGALRDVAVTELRAQGHEVRVSDLYAMGWKAAIDRDDFPALPPKA
CEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEHHHHHHHCHHHCCCCCCCCCCCCCC
RLQVAAASGEALAAQALTGDVTAEQDKLLWADLLILQFPLWWYAMPAILKGWVDRVYAYG
EEEEEECCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FAYGVGEHSDRRWGERFGEGRLAGKRAMLIVTTGGWEEHYSARGINGPIDDLLFPITHGI
HHHCCCCCCHHHHHHHHCCCCCCCCEEEEEEEECCCHHHHCCCCCCCCHHHHHHHHHHHH
LFYPGYAVLPSFVAYRVDRLDGPGFDALAERLRQRLRGLSTTPPIPFRRQNGGEYAIPSL
HHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCCE
ELRPDLGAAGAMGFALHQEDGDHVDKAR
EECCCCCCCCCCEEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NADH; NADPH; H+; acceptor

Specific reaction: NAD(P)H + H+ + acceptor = NAD(P)+ + reduced acceptor

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]