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The map label for this gene is rlpA [H]

Identifier: 83593040

GI number: 83593040

Start: 1995660

End: 1996763

Strand: Reverse

Name: rlpA [H]

Synonym: Rru_A1705

Alternate gene names: 83593040

Gene position: 1996763-1995660 (Counterclockwise)

Preceding gene: 83593041

Following gene: 83593039

Centisome position: 45.87

GC content: 69.2

Gene sequence:

>1104_bases
ATGAGCGTGAAGAGTTGGCGCGGCGGGCGAAGCTGGCGGGCGCCGCTTGGTCTCTTGCTGATCAGCGCCGCCGCCCTCGC
CCTGTCGGGCTGCGCCGAAACCGGGCTGGCCTTTAATACCGCCAAGCAGGTCGGCGGGCGCGGCGACAGCGGCAAGGGCA
GCTACAAGATCGGCGAGCCCTATCAGATCGGCGGCAAGTGGTATTACCCGAAAGAGGACTACAGCTATTCCCAAACGGGA
ACCGCCTCGTGGTACGGCCAGGATTTCCACGGCAAACGCACGGCCAACGGCGAAACCTTCGATATGAACCGGCTGACCGC
CGCCCATACCACCTTGCCGCTGCCCAGCATCGTGCGGGTGACCAATCTTGGCAATGGCCGCTCGGTCACCGTCCGCGTCA
ATGATCGCGGCCCCTTTGTCGGCGAGCGGTTGATCGACATGTCGCGGGCCTCGGCCCGGGCGCTTGGCTTCGAGGCCCAG
GGCACCGCCCGCGTCCGCGTGCAGATCCTGGCCCAGGAAAGTCAGGTCGCCAAGCGCGAGGCGATGGGCGGCGAAATGCT
CTATGCCGGCGACGCCCCGGTCTCGGCGCCGCGCGGCGCCGTTGAAAGCGTGGCGATGAGCGATCTTCCCGCCTCGGGCG
GATCTTCTTACGCCGCCTCGGGCGGGTCGCGCCGATCGGTGGTGGTCGCCCCGGGATCCAGCGTGCGCCAAGCCACGCCG
ACCGGGGCCGAGGGCTGGGGCGAGAGCGGCGGTGGCGGCGGCGGGGGAGGGCGCATCGTCATCCCCGCAGCACCCCCGCG
CGCCGCGCCCGCCACCGGCGCCTTCACCCTGGGGCCGGCCACGAAGGCGCCAGCCGCCGTCCGGGGCCCCGCCGGCGGCG
ACGCCTATGTCCAGGTTGGCGCCTTCGCCGATCTCGGCAATGCCAAAACCCTGGAAAGCCGCCTGAAATCCATCGGCCCC
ACCGTCGTCATGCCGGTGACCATGGGCGATCATGTTTTGTACCGGGTGCGCCTGGGGCCCTTCGCCGACGGCACCCAGGC
TTTCAACACCTTGCGGACCACCCAGACTTCAGGTTATCCAGAGGCTCGACTCATCGAGGACTGA

Upstream 100 bases:

>100_bases
CCCGGGTCGCCATCCGCGCCTATCAAGCTTCGATCGGCGCCCCGGCCGATGGCTATGCCAATGACGCCCTGCTCGCCGAT
CTGCGCCGGCGGAGTGGCCG

Downstream 100 bases:

>100_bases
CGGATTGCCTCCAATCCGACATTTTTGTCCTCATTTCTTGTCGTCCCTTGCGGTCTGGGCACGGTGTTCCAGGGATGCCC
GCCGCCGGGACGCGGGTCGA

Product: rare lipoprotein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 367; Mature: 366

Protein sequence:

>367_residues
MSVKSWRGGRSWRAPLGLLLISAAALALSGCAETGLAFNTAKQVGGRGDSGKGSYKIGEPYQIGGKWYYPKEDYSYSQTG
TASWYGQDFHGKRTANGETFDMNRLTAAHTTLPLPSIVRVTNLGNGRSVTVRVNDRGPFVGERLIDMSRASARALGFEAQ
GTARVRVQILAQESQVAKREAMGGEMLYAGDAPVSAPRGAVESVAMSDLPASGGSSYAASGGSRRSVVVAPGSSVRQATP
TGAEGWGESGGGGGGGGRIVIPAAPPRAAPATGAFTLGPATKAPAAVRGPAGGDAYVQVGAFADLGNAKTLESRLKSIGP
TVVMPVTMGDHVLYRVRLGPFADGTQAFNTLRTTQTSGYPEARLIED

Sequences:

>Translated_367_residues
MSVKSWRGGRSWRAPLGLLLISAAALALSGCAETGLAFNTAKQVGGRGDSGKGSYKIGEPYQIGGKWYYPKEDYSYSQTG
TASWYGQDFHGKRTANGETFDMNRLTAAHTTLPLPSIVRVTNLGNGRSVTVRVNDRGPFVGERLIDMSRASARALGFEAQ
GTARVRVQILAQESQVAKREAMGGEMLYAGDAPVSAPRGAVESVAMSDLPASGGSSYAASGGSRRSVVVAPGSSVRQATP
TGAEGWGESGGGGGGGGRIVIPAAPPRAAPATGAFTLGPATKAPAAVRGPAGGDAYVQVGAFADLGNAKTLESRLKSIGP
TVVMPVTMGDHVLYRVRLGPFADGTQAFNTLRTTQTSGYPEARLIED
>Mature_366_residues
SVKSWRGGRSWRAPLGLLLISAAALALSGCAETGLAFNTAKQVGGRGDSGKGSYKIGEPYQIGGKWYYPKEDYSYSQTGT
ASWYGQDFHGKRTANGETFDMNRLTAAHTTLPLPSIVRVTNLGNGRSVTVRVNDRGPFVGERLIDMSRASARALGFEAQG
TARVRVQILAQESQVAKREAMGGEMLYAGDAPVSAPRGAVESVAMSDLPASGGSSYAASGGSRRSVVVAPGSSVRQATPT
GAEGWGESGGGGGGGGRIVIPAAPPRAAPATGAFTLGPATKAPAAVRGPAGGDAYVQVGAFADLGNAKTLESRLKSIGPT
VVMPVTMGDHVLYRVRLGPFADGTQAFNTLRTTQTSGYPEARLIED

Specific function: Unknown

COG id: COG0797

COG function: function code M; Lipoproteins

Gene ontology:

Cell location: Attached To The Membrane By A Lipid Anchor [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rlpA family [H]

Homologues:

Organism=Escherichia coli, GI1786852, Length=321, Percent_Identity=34.8909657320872, Blast_Score=116, Evalue=3e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009009
- InterPro:   IPR005728
- InterPro:   IPR022438
- InterPro:   IPR012997 [H]

Pfam domain/function: PF03330 DPBB_1 [H]

EC number: NA

Molecular weight: Translated: 37884; Mature: 37753

Theoretical pI: Translated: 10.20; Mature: 10.20

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVKSWRGGRSWRAPLGLLLISAAALALSGCAETGLAFNTAKQVGGRGDSGKGSYKIGEP
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEHHHHHHCCCCCCCCCCEECCCC
YQIGGKWYYPKEDYSYSQTGTASWYGQDFHGKRTANGETFDMNRLTAAHTTLPLPSIVRV
EEECCEEECCCCCCCCCCCCCCEECCCCCCCCCCCCCCEEECCCEEEHHHCCCCCCEEEE
TNLGNGRSVTVRVNDRGPFVGERLIDMSRASARALGFEAQGTARVRVQILAQESQVAKRE
EECCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECHHHHHHHH
AMGGEMLYAGDAPVSAPRGAVESVAMSDLPASGGSSYAASGGSRRSVVVAPGSSVRQATP
HCCCCEEEECCCCCCCCCCHHHHHHHHCCCCCCCCCEECCCCCCCEEEECCCCCCCCCCC
TGAEGWGESGGGGGGGGRIVIPAAPPRAAPATGAFTLGPATKAPAAVRGPAGGDAYVQVG
CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCEEECCCCCCCCEEECCCCCCEEEEEE
AFADLGNAKTLESRLKSIGPTVVMPVTMGDHVLYRVRLGPFADGTQAFNTLRTTQTSGYP
CEECCCCHHHHHHHHHHCCCEEEEEEECCCEEEEEEEECCCCCCHHHHHHHHHCCCCCCC
EARLIED
CCEECCC
>Mature Secondary Structure 
SVKSWRGGRSWRAPLGLLLISAAALALSGCAETGLAFNTAKQVGGRGDSGKGSYKIGEP
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEHHHHHHCCCCCCCCCCEECCCC
YQIGGKWYYPKEDYSYSQTGTASWYGQDFHGKRTANGETFDMNRLTAAHTTLPLPSIVRV
EEECCEEECCCCCCCCCCCCCCEECCCCCCCCCCCCCCEEECCCEEEHHHCCCCCCEEEE
TNLGNGRSVTVRVNDRGPFVGERLIDMSRASARALGFEAQGTARVRVQILAQESQVAKRE
EECCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECHHHHHHHH
AMGGEMLYAGDAPVSAPRGAVESVAMSDLPASGGSSYAASGGSRRSVVVAPGSSVRQATP
HCCCCEEEECCCCCCCCCCHHHHHHHHCCCCCCCCCEECCCCCCCEEEECCCCCCCCCCC
TGAEGWGESGGGGGGGGRIVIPAAPPRAAPATGAFTLGPATKAPAAVRGPAGGDAYVQVG
CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCEEECCCCCCCCEEECCCCCCEEEEEE
AFADLGNAKTLESRLKSIGPTVVMPVTMGDHVLYRVRLGPFADGTQAFNTLRTTQTSGYP
CEECCCCHHHHHHHHHHCCCEEEEEEECCCEEEEEEEECCCCCCHHHHHHHHHCCCCCCC
EARLIED
CCEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11557893 [H]