| Definition | Rhodospirillum rubrum ATCC 11170 chromosome, complete genome. |
|---|---|
| Accession | NC_007643 |
| Length | 4,352,825 |
Click here to switch to the map view.
The map label for this gene is dat [H]
Identifier: 83593017
GI number: 83593017
Start: 1974564
End: 1975439
Strand: Direct
Name: dat [H]
Synonym: Rru_A1682
Alternate gene names: 83593017
Gene position: 1974564-1975439 (Clockwise)
Preceding gene: 83593016
Following gene: 83593018
Centisome position: 45.36
GC content: 65.18
Gene sequence:
>876_bases ATGTCCCGCATCGCCTATGTCAACGGTCAGTATGTGCTTCATCGCGACGCCGCGGTCCATATCGAGGATCGCGGCTACCA GTTTTCCGACGGTATCTACGAGGTGACGGCCATCTATAAGGGCCGGCCCGTGGATAACGACGGCCATTGGGACCGCCTGG AGCGCTCGCTGCGCGAACTGAGGATCGACATGCCGATGACCCGGGGCGGCCTTGATCTGGTCGCGCGCGAGGTGGTTCGC CGCAACCGCGTGCGCAACGGCATCATCTATATCCAGATCACCCGGGGCGTCTCGCCGCGCAACCATCCCTTTCCCAAGGA CACCCCGCCGTCGATCGTCATGACGGCGCGCCACGGCCTGGGCTCGAAGCCCGAAGTCGCCGCCAAGGGCGTCAGCCTGA TCAGCCATCCCGATATCCGCTGGGGCCGGCGCGACATCAAGACCGTTTCGCTGCTGCCCAACGTGCTGGCCAAGCAGGCC GCCTATGAGCAGCACGCCTATGAGGCGATCCTGGTCGGACCCGATGGCATGGTCAGCGAATGCTCGTCGTCCAACGCCTG GATCGTCACCAAGGATGGCGCCCTGGTCACCCGGCCGCTGTCCAACGACATTCTCGGCGGCATCACCCGCAAGCGGCTGA TCGATCTGGCCGACGCCGAGGGGCTGCGGGTCGAGGAGCGGTCGTTCTCCCTCGACGAGGCCAAGGCCGCCCGCGAGGTC TTCGTTTCCTCGACCAGTTCCTTCGCCATGCCGGTGGTCCGCATCGACGACAGCGTCATCGGCAATGGCCACCCCGGCAG CATCGTGACCAATCTGCGCGCCCGCTATTTCGACTTCCTCGAGTCGGCAAGCGGTCCGCTGTGGTATGGCCACTGA
Upstream 100 bases:
>100_bases CGCCGAAGGTGCTTAAATCCGCTGTCCCGATCGATCCTGGGCCCGGCGCGTGTAGCGCATCGGGTTCTCCCACACATTCG CTCCCGGAGTGCGCGCAGTC
Downstream 100 bases:
>100_bases TCCCGTGAGCATGGGTCTTTCCCTGGAAACGGCGCGCCCCCCGCGCGCCGTTCTCTTCGACTGGGATAATACCCTGGTCG ATTCCTGGCCGGTCATCCAT
Product: D-amino acid aminotransferase
Products: NA
Alternate protein names: D-amino acid aminotransferase; D-amino acid transaminase; DAAT; D-aspartate aminotransferase [H]
Number of amino acids: Translated: 291; Mature: 290
Protein sequence:
>291_residues MSRIAYVNGQYVLHRDAAVHIEDRGYQFSDGIYEVTAIYKGRPVDNDGHWDRLERSLRELRIDMPMTRGGLDLVAREVVR RNRVRNGIIYIQITRGVSPRNHPFPKDTPPSIVMTARHGLGSKPEVAAKGVSLISHPDIRWGRRDIKTVSLLPNVLAKQA AYEQHAYEAILVGPDGMVSECSSSNAWIVTKDGALVTRPLSNDILGGITRKRLIDLADAEGLRVEERSFSLDEAKAAREV FVSSTSSFAMPVVRIDDSVIGNGHPGSIVTNLRARYFDFLESASGPLWYGH
Sequences:
>Translated_291_residues MSRIAYVNGQYVLHRDAAVHIEDRGYQFSDGIYEVTAIYKGRPVDNDGHWDRLERSLRELRIDMPMTRGGLDLVAREVVR RNRVRNGIIYIQITRGVSPRNHPFPKDTPPSIVMTARHGLGSKPEVAAKGVSLISHPDIRWGRRDIKTVSLLPNVLAKQA AYEQHAYEAILVGPDGMVSECSSSNAWIVTKDGALVTRPLSNDILGGITRKRLIDLADAEGLRVEERSFSLDEAKAAREV FVSSTSSFAMPVVRIDDSVIGNGHPGSIVTNLRARYFDFLESASGPLWYGH >Mature_290_residues SRIAYVNGQYVLHRDAAVHIEDRGYQFSDGIYEVTAIYKGRPVDNDGHWDRLERSLRELRIDMPMTRGGLDLVAREVVRR NRVRNGIIYIQITRGVSPRNHPFPKDTPPSIVMTARHGLGSKPEVAAKGVSLISHPDIRWGRRDIKTVSLLPNVLAKQAA YEQHAYEAILVGPDGMVSECSSSNAWIVTKDGALVTRPLSNDILGGITRKRLIDLADAEGLRVEERSFSLDEAKAAREVF VSSTSSFAMPVVRIDDSVIGNGHPGSIVTNLRARYFDFLESASGPLWYGH
Specific function: Acts on the D-isomers of alanine, leucine, aspartate, glutamate, aminobutyrate, norvaline and asparagine. The enzyme transfers an amino group from a substrate D-amino acid to the pyridoxal phosphate cofactor to form pyridoxamine and an alpha- keto acid in
COG id: COG0115
COG function: function code EH; Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family [H]
Homologues:
Organism=Escherichia coli, GI48994963, Length=302, Percent_Identity=25.4966887417219, Blast_Score=81, Evalue=1e-16, Organism=Escherichia coli, GI1787338, Length=252, Percent_Identity=24.2063492063492, Blast_Score=73, Evalue=2e-14,
Paralogues:
None
Copy number: 2342 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 11,000 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001544 - InterPro: IPR018300 - InterPro: IPR005784 [H]
Pfam domain/function: PF01063 Aminotran_4 [H]
EC number: =2.6.1.21 [H]
Molecular weight: Translated: 32359; Mature: 32228
Theoretical pI: Translated: 9.21; Mature: 9.21
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRIAYVNGQYVLHRDAAVHIEDRGYQFSDGIYEVTAIYKGRPVDNDGHWDRLERSLREL CCCEEEECCEEEEEECCEEEECCCCEECCCCEEEEEEEEECCCCCCCCCHHHHHHHHHHH RIDMPMTRGGLDLVAREVVRRNRVRNGIIYIQITRGVSPRNHPFPKDTPPSIVMTARHGL CCCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCCCCEEEEECCCC GSKPEVAAKGVSLISHPDIRWGRRDIKTVSLLPNVLAKQAAYEQHAYEAILVGPDGMVSE CCCCCHHHCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHH CSSSNAWIVTKDGALVTRPLSNDILGGITRKRLIDLADAEGLRVEERSFSLDEAKAAREV CCCCCCEEEEECCCEEECCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHH FVSSTSSFAMPVVRIDDSVIGNGHPGSIVTNLRARYFDFLESASGPLWYGH HHCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEECCC >Mature Secondary Structure SRIAYVNGQYVLHRDAAVHIEDRGYQFSDGIYEVTAIYKGRPVDNDGHWDRLERSLREL CCEEEECCEEEEEECCEEEECCCCEECCCCEEEEEEEEECCCCCCCCCHHHHHHHHHHH RIDMPMTRGGLDLVAREVVRRNRVRNGIIYIQITRGVSPRNHPFPKDTPPSIVMTARHGL CCCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCCCCEEEEECCCC GSKPEVAAKGVSLISHPDIRWGRRDIKTVSLLPNVLAKQAAYEQHAYEAILVGPDGMVSE CCCCCHHHCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHH CSSSNAWIVTKDGALVTRPLSNDILGGITRKRLIDLADAEGLRVEERSFSLDEAKAAREV CCCCCCEEEEECCCEEECCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHH FVSSTSSFAMPVVRIDDSVIGNGHPGSIVTNLRARYFDFLESASGPLWYGH HHCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9579061; 9384377 [H]