| Definition | Rhodospirillum rubrum ATCC 11170 chromosome, complete genome. |
|---|---|
| Accession | NC_007643 |
| Length | 4,352,825 |
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The map label for this gene is trkA [H]
Identifier: 83593016
GI number: 83593016
Start: 1972992
End: 1974368
Strand: Direct
Name: trkA [H]
Synonym: Rru_A1681
Alternate gene names: 83593016
Gene position: 1972992-1974368 (Clockwise)
Preceding gene: 83593015
Following gene: 83593017
Centisome position: 45.33
GC content: 64.05
Gene sequence:
>1377_bases ATGAAAGTCATCGTTTGCGGCGCCGGACAGGTCGGCTTTTCCATCGCCCGCTATCTCGCCGCCGAGAACAACGACGTGAC GGTGGTCGATCAGCGCCCCGAGCTGATCCGCTCGATCTCCGACACCCTCGATGTCCAGGCGCTGGTCGGCTATGCCTCCC ATCCCGGGGTGCTGGAAAAGGCCGGGGCCGAGGACGCCGACATGCTGATCGCCGTGACCCATGCCGATGAGGTCAATATG GTGGCCTGTCAGGTCGCCCATTCGCTGTTCAACGTGCCGACCAAGATCGCCCGCGTGCGCAACCAGAATTATCTTCAGCC CCATTGGGCCAATCTGTTCTCGCGCGAGAACATGCCGATCGACGTCATCATCAGCCCGGAGATCGAGGTGGCGCGCGCCA TCATCCGCCGTCTCCAGGTGCCCGGGGCCATGGATATCATTCCGCTGGCCGGCGACCGGGTGCGGCTGATCGGCGTGCGC TGCACCGAGAACACCCCGGTCGTTCATACGCCGCTGCGCCAGCTCACCCAGTTGTTCCCCGAGCTCAACATCGTCGTCGT CGGCATCGTGCGCAACGACCGGGCGATCGTGCCGAGCGCCGAGGATCAGATGCTGCCCGGCGACGAGGTCTATTTCGTCG TTTCCACCGACCGCACCCAACGCGCCCTGTCGGCCTTTGGCCACGAGGAGACGGCGGCGCGCCGCGTGCTGATTTTCGGT GGCGGCAATGTCGGGCTGTTCCTGGCCCAGGCGCTGGAACGCGATTTTCCCCAGGTCAGCGCCAAGATCATCGAGAACAA CAAGGAACGCGCCCAGCATGTCGCCAAGACCCTGGACCGCACCATGGTGCTGCTGGGCGACGCCCTCAATCCCGAGATGC TGGAAGAGGCCGGGGTGGCCCAGGCCGAGACCGTGGTCGCCGTCAGCAATGACGACGAGACCAATATCCTGGCCTCGCTG CTGGCCAAGCGCTATGGCTGCCAGCGGGCGATCACGCTGATCAATAAATCCACCTATAATTCCCTGGTCGGCACCGTCGG CGTCGATGTGGTGGTCAATCCGCGCACCATCACCGTGTCCAAGATCCTCCAGCATGTCCGGCGCGGCCGCATCCACAGCG TCCATTCCCTGCACGAGGGCTTTGGCGAGTTGATCGAGGCCGATGCCCTTGACACCTCGCCGCTGGTCGGCAAGCCGCTC AAGGATGTCAATCTTCCCGCCGGCGTGCTGCTGGGCGCCATCGTGCGCGGCACCCAGGTGATCAGCCCGCGCGGCACCAC GGTGATCCAGGGCGGCGACCGCATCATCCTGTTCGCCTCGACCGCGGCGATCAAAAAGGTTGAAAAGATGTTTTCCGTTC GCATCGAGTTCTTCTGA
Upstream 100 bases:
>100_bases GAGCGCTCGGCCCTGCACCGCAAGCTTAAAAGCCTGGGGGTGGGCGGATCCGATCGCCAGAAGGTATGACCCATTTTGTT CCCTTAAGGACCCTCCGGCC
Downstream 100 bases:
>100_bases ACCCGATAGGCGGGCAAATCGCCGTTACGATCCGTTCCCGATTGCGAGGGGATTTGCTCTGGGCGTATTTTTCGGCAAAG AGGGTACCCGCCCTTCGCCG
Product: potassium transporter peripheral membrane component
Products: NA
Alternate protein names: K(+)-uptake protein trkA [H]
Number of amino acids: Translated: 458; Mature: 458
Protein sequence:
>458_residues MKVIVCGAGQVGFSIARYLAAENNDVTVVDQRPELIRSISDTLDVQALVGYASHPGVLEKAGAEDADMLIAVTHADEVNM VACQVAHSLFNVPTKIARVRNQNYLQPHWANLFSRENMPIDVIISPEIEVARAIIRRLQVPGAMDIIPLAGDRVRLIGVR CTENTPVVHTPLRQLTQLFPELNIVVVGIVRNDRAIVPSAEDQMLPGDEVYFVVSTDRTQRALSAFGHEETAARRVLIFG GGNVGLFLAQALERDFPQVSAKIIENNKERAQHVAKTLDRTMVLLGDALNPEMLEEAGVAQAETVVAVSNDDETNILASL LAKRYGCQRAITLINKSTYNSLVGTVGVDVVVNPRTITVSKILQHVRRGRIHSVHSLHEGFGELIEADALDTSPLVGKPL KDVNLPAGVLLGAIVRGTQVISPRGTTVIQGGDRIILFASTAAIKKVEKMFSVRIEFF
Sequences:
>Translated_458_residues MKVIVCGAGQVGFSIARYLAAENNDVTVVDQRPELIRSISDTLDVQALVGYASHPGVLEKAGAEDADMLIAVTHADEVNM VACQVAHSLFNVPTKIARVRNQNYLQPHWANLFSRENMPIDVIISPEIEVARAIIRRLQVPGAMDIIPLAGDRVRLIGVR CTENTPVVHTPLRQLTQLFPELNIVVVGIVRNDRAIVPSAEDQMLPGDEVYFVVSTDRTQRALSAFGHEETAARRVLIFG GGNVGLFLAQALERDFPQVSAKIIENNKERAQHVAKTLDRTMVLLGDALNPEMLEEAGVAQAETVVAVSNDDETNILASL LAKRYGCQRAITLINKSTYNSLVGTVGVDVVVNPRTITVSKILQHVRRGRIHSVHSLHEGFGELIEADALDTSPLVGKPL KDVNLPAGVLLGAIVRGTQVISPRGTTVIQGGDRIILFASTAAIKKVEKMFSVRIEFF >Mature_458_residues MKVIVCGAGQVGFSIARYLAAENNDVTVVDQRPELIRSISDTLDVQALVGYASHPGVLEKAGAEDADMLIAVTHADEVNM VACQVAHSLFNVPTKIARVRNQNYLQPHWANLFSRENMPIDVIISPEIEVARAIIRRLQVPGAMDIIPLAGDRVRLIGVR CTENTPVVHTPLRQLTQLFPELNIVVVGIVRNDRAIVPSAEDQMLPGDEVYFVVSTDRTQRALSAFGHEETAARRVLIFG GGNVGLFLAQALERDFPQVSAKIIENNKERAQHVAKTLDRTMVLLGDALNPEMLEEAGVAQAETVVAVSNDDETNILASL LAKRYGCQRAITLINKSTYNSLVGTVGVDVVVNPRTITVSKILQHVRRGRIHSVHSLHEGFGELIEADALDTSPLVGKPL KDVNLPAGVLLGAIVRGTQVISPRGTTVIQGGDRIILFASTAAIKKVEKMFSVRIEFF
Specific function: Part of a potassium transport system [H]
COG id: COG0569
COG function: function code P; K+ transport systems, NAD-binding component
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 RCK N-terminal domains [H]
Homologues:
Organism=Escherichia coli, GI1789685, Length=455, Percent_Identity=40, Blast_Score=344, Evalue=5e-96,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006036 - InterPro: IPR016040 - InterPro: IPR006037 - InterPro: IPR003148 [H]
Pfam domain/function: PF02080 TrkA_C; PF02254 TrkA_N [H]
EC number: NA
Molecular weight: Translated: 49835; Mature: 49835
Theoretical pI: Translated: 6.59; Mature: 6.59
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKVIVCGAGQVGFSIARYLAAENNDVTVVDQRPELIRSISDTLDVQALVGYASHPGVLEK CEEEEECCCHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCHHHH AGAEDADMLIAVTHADEVNMVACQVAHSLFNVPTKIARVRNQNYLQPHWANLFSRENMPI CCCCCCCEEEEEEECCCCHHHHHHHHHHHHCCHHHHHHHCCCCCCCCHHHHHHCCCCCCE DVIISPEIEVARAIIRRLQVPGAMDIIPLAGDRVRLIGVRCTENTPVVHTPLRQLTQLFP EEEECCCHHHHHHHHHHHCCCCCCEEEECCCCEEEEEEEEECCCCCEEEHHHHHHHHHCC ELNIVVVGIVRNDRAIVPSAEDQMLPGDEVYFVVSTDRTQRALSAFGHEETAARRVLIFG CCCEEEEEEEECCEEECCCCCCCCCCCCCEEEEEECCHHHHHHHHCCCCCHHHCEEEEEE GGNVGLFLAQALERDFPQVSAKIIENNKERAQHVAKTLDRTMVLLGDALNPEMLEEAGVA CCCHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHEECCCCCCHHHHHHCCCC QAETVVAVSNDDETNILASLLAKRYGCQRAITLINKSTYNSLVGTVGVDVVVNPRTITVS CEEEEEEECCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCEEEEECCCEEEHH KILQHVRRGRIHSVHSLHEGFGELIEADALDTSPLVGKPLKDVNLPAGVLLGAIVRGTQV HHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCEE ISPRGTTVIQGGDRIILFASTAAIKKVEKMFSVRIEFF ECCCCCEEEECCCEEEEEECHHHHHHHHHHHHEEEECC >Mature Secondary Structure MKVIVCGAGQVGFSIARYLAAENNDVTVVDQRPELIRSISDTLDVQALVGYASHPGVLEK CEEEEECCCHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCHHHH AGAEDADMLIAVTHADEVNMVACQVAHSLFNVPTKIARVRNQNYLQPHWANLFSRENMPI CCCCCCCEEEEEEECCCCHHHHHHHHHHHHCCHHHHHHHCCCCCCCCHHHHHHCCCCCCE DVIISPEIEVARAIIRRLQVPGAMDIIPLAGDRVRLIGVRCTENTPVVHTPLRQLTQLFP EEEECCCHHHHHHHHHHHCCCCCCEEEECCCCEEEEEEEEECCCCCEEEHHHHHHHHHCC ELNIVVVGIVRNDRAIVPSAEDQMLPGDEVYFVVSTDRTQRALSAFGHEETAARRVLIFG CCCEEEEEEEECCEEECCCCCCCCCCCCCEEEEEECCHHHHHHHHCCCCCHHHCEEEEEE GGNVGLFLAQALERDFPQVSAKIIENNKERAQHVAKTLDRTMVLLGDALNPEMLEEAGVA CCCHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHEECCCCCCHHHHHHCCCC QAETVVAVSNDDETNILASLLAKRYGCQRAITLINKSTYNSLVGTVGVDVVVNPRTITVS CEEEEEEECCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCEEEEECCCEEEHH KILQHVRRGRIHSVHSLHEGFGELIEADALDTSPLVGKPLKDVNLPAGVLLGAIVRGTQV HHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCEE ISPRGTTVIQGGDRIILFASTAAIKKVEKMFSVRIEFF ECCCCCEEEECCCEEEEEECHHHHHHHHHHHHEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 1661370 [H]