| Definition | Rhodospirillum rubrum ATCC 11170 chromosome, complete genome. |
|---|---|
| Accession | NC_007643 |
| Length | 4,352,825 |
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The map label for this gene is comEC [H]
Identifier: 83592937
GI number: 83592937
Start: 1887684
End: 1889903
Strand: Direct
Name: comEC [H]
Synonym: Rru_A1602
Alternate gene names: 83592937
Gene position: 1887684-1889903 (Clockwise)
Preceding gene: 83592934
Following gene: 83592939
Centisome position: 43.37
GC content: 71.76
Gene sequence:
>2220_bases ATGCGCAAGCAAAGTGAGGACGATGGCCAAAAAGAAGCCGGCGGGGTGGCGTCTTTTGACGAGGAGGAGGACATCGATCC GGGGCCAAGGATCGGCCCTCTGGCCCGTCTCCTCGTCGCCGAGCGGGCGGTCTGGGCGCTCTGGCTGCCCGTCGCCCTGG GGCTGGGCATCGCCCTTTATTTCTCCCTGAAAACCGAGCCGCCGGCCTGGGTGGCGCCCGCCGTGTTGGCGCTTCTCGCC CTGGCTTCGCCCCATGTCCGCGCCCGCGATGGCCTGACCGCCGCCAGCCGGGGGGTGATGGCTTTGGTGATCGGGTTTTG TGTCGCCCAGGCCTGGGCCTTGGGCGTCGCCGCCCCGGTGATCGAGCGCGAGGGCCGCCCCGGTCTAATCGAGGGCCGGG TGGTGGCGAACGAGCCGCTTGATCGCGGCTGGCGGATGATCCTTGACGATCTGACCATCGAGGGTCTGGAGGCGGCGAAA ACCCCGCGCCGGATCCGCCTGCGCCTCCATCCCGGGCAGACCGGCGGGGTGGCGCCGCTCCCGGGCAGCCGGATCGCCGT GCTTGGCCAACTCGCCCCGCCGCCGACCCCGGTGGCCCCGGGCGTCTTCGATTTCGCTCGGGGGCTGTGGTTCGAGCGCA TCGGCGGCGTCGGCTTCGCCCTTGGCCCGCTGCGCGGCCGCGGCAGTCTGGCCGAGGGGCCGGTTCCACGGATCCGCGCC GCCATCCAGGGCTGGCGCCAGGGGGTGACGGCGCGGATCATCGCCGCCGAACCAACCCTGCACGGGCCCTTGACCGCCGC CCTGATCACCGGCGAACAGCGGGCGATCGATCCCGAGATCCAAGAGGCGATGCGGGCTTCGGGATTGTCCCATCTGCTGG CGATTTCCGGCCTCAATATGTCGCTGGCCGCCGGTTTGATGTTCGTGCTGGTGCGCGGCGGGCTGGCGCTGTGGCCGCGC GCCGCCTTGCTGTGGCCGATCAAGAAGCTGGCCGCCGCCGCCGCCCTGGCCGGTTGCGCCGCCTATCTGGTGCTGTCGGG GGCGGGGGTGCCGGCCGAACGGGCCTTCATCATGACCGGTTTGGTCTTGCTGGCGGTGCTGGTCGATCGCACGGCGCTGT CGATGCGCACCCTGGCCCTGGCCGGGGTGGCGGTGTTGCTGATCGCGCCCGAAAGCCTGATGGGGGCGAGTTTCCAGATG TCGTTCGCCGCCGTCATCGCCCTGATCGCCACCTATGGCGCTCTGGGGCCGCAAGCCGGCCGTTGGCGGGCCGGCGGCGG CGGCGGGATGGGGCGGGCCGCGGCGCTTTATCTGGGCGGCGTCGCCCTGTCGACGGTGGTCGCCACCGTGGCGACCCTGC CCTATGGCGCCTATCATTTCCATCGGGTGGCGCTTTACGGGGTGGTCGCCAATATGATCGCCGTGCCGCTGACCGGTTTT TGGGTGATGCCCTGGTGTTTGGTGCTGCTGGCCCTGATGCCCTTCGGGCTGGAAGGCTTGGCGATGGCGCCTTTGGGCTG GGGGCTGGACGGCATCGTCGCCGTCGCCCGCTGGGTGGGCGGCTGGCCCGGAGCCCTGCTGGCGATTCCCGATGGACCGG GTTGGGCGCTGGGGCTGGTTAGCCTGGGCGGCTTGTGGCTCTGCCTGTGGACGCGGCCCTGGCGGCTGGCCGGGGTGGTG CCGATCCTGGTTGGCATGACCGTGCCGTGGCTGACGCCGCCCCCCGATGTGCTGATCAACGACGAGGGCACCCTGATCGC CGTGCGGGCGGCCGGCGGTCAGCTGGTCTTCAGCGATTTCCGCAAGGCGCGCTTCACCCGCGAGGTCTGGGGGGAGGCCT TTGGCGGAGCGGCGGGCGAGGGGCGCTTTCCGGTGGCCGGCGCCTCGGCCGATGGCCGGCTGGTTTGTGATGGCGAAGGC TGCCTGTACCGGCGCCCGGGGCTCGTTATCGCCCTGCCGCGCACCCTGGGCGCGGCCTTTGAAGACAGGGCCCTGGCCGA TCTGGTGATCGTACCCTTCGCCCGCTTCGCGTCCCCCCCGCCCCCCCTTGCCCCCGGGCGCGGGCCGGGGTGGATCATCG ATCGCGGCGATCTGATCGGCGGCGGCGCCCATGCCCTGTGGATCGCCGATGACGGCCAAGTGACCCTGCGCACGGTCGCC GGCGAGCGCGGACACCGCCCCTGGACCGGGAAACCGGGTCCAGGCGACGGGGCGCGTTAG
Upstream 100 bases:
>100_bases GACAAGGTGCGCGGGGCACACGGGGATGTCCGCCGATTGACGGCGGGTTCACCCGCGTGTGTACCATAGATAGGGGCTTG GGCACCAGACGCGAGGGGGA
Downstream 100 bases:
>100_bases GGGCTGGGGGTCAGGCCAGCAGCGGCATCATCGCCGCGACCAAGGGATGGCGGACGATATCCTCGGCCCCCAGGCGGACG ATGGCGACGTCTTCCAGGGG
Product: ComEC/Rec2-like protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 739; Mature: 739
Protein sequence:
>739_residues MRKQSEDDGQKEAGGVASFDEEEDIDPGPRIGPLARLLVAERAVWALWLPVALGLGIALYFSLKTEPPAWVAPAVLALLA LASPHVRARDGLTAASRGVMALVIGFCVAQAWALGVAAPVIEREGRPGLIEGRVVANEPLDRGWRMILDDLTIEGLEAAK TPRRIRLRLHPGQTGGVAPLPGSRIAVLGQLAPPPTPVAPGVFDFARGLWFERIGGVGFALGPLRGRGSLAEGPVPRIRA AIQGWRQGVTARIIAAEPTLHGPLTAALITGEQRAIDPEIQEAMRASGLSHLLAISGLNMSLAAGLMFVLVRGGLALWPR AALLWPIKKLAAAAALAGCAAYLVLSGAGVPAERAFIMTGLVLLAVLVDRTALSMRTLALAGVAVLLIAPESLMGASFQM SFAAVIALIATYGALGPQAGRWRAGGGGGMGRAAALYLGGVALSTVVATVATLPYGAYHFHRVALYGVVANMIAVPLTGF WVMPWCLVLLALMPFGLEGLAMAPLGWGLDGIVAVARWVGGWPGALLAIPDGPGWALGLVSLGGLWLCLWTRPWRLAGVV PILVGMTVPWLTPPPDVLINDEGTLIAVRAAGGQLVFSDFRKARFTREVWGEAFGGAAGEGRFPVAGASADGRLVCDGEG CLYRRPGLVIALPRTLGAAFEDRALADLVIVPFARFASPPPPLAPGRGPGWIIDRGDLIGGGAHALWIADDGQVTLRTVA GERGHRPWTGKPGPGDGAR
Sequences:
>Translated_739_residues MRKQSEDDGQKEAGGVASFDEEEDIDPGPRIGPLARLLVAERAVWALWLPVALGLGIALYFSLKTEPPAWVAPAVLALLA LASPHVRARDGLTAASRGVMALVIGFCVAQAWALGVAAPVIEREGRPGLIEGRVVANEPLDRGWRMILDDLTIEGLEAAK TPRRIRLRLHPGQTGGVAPLPGSRIAVLGQLAPPPTPVAPGVFDFARGLWFERIGGVGFALGPLRGRGSLAEGPVPRIRA AIQGWRQGVTARIIAAEPTLHGPLTAALITGEQRAIDPEIQEAMRASGLSHLLAISGLNMSLAAGLMFVLVRGGLALWPR AALLWPIKKLAAAAALAGCAAYLVLSGAGVPAERAFIMTGLVLLAVLVDRTALSMRTLALAGVAVLLIAPESLMGASFQM SFAAVIALIATYGALGPQAGRWRAGGGGGMGRAAALYLGGVALSTVVATVATLPYGAYHFHRVALYGVVANMIAVPLTGF WVMPWCLVLLALMPFGLEGLAMAPLGWGLDGIVAVARWVGGWPGALLAIPDGPGWALGLVSLGGLWLCLWTRPWRLAGVV PILVGMTVPWLTPPPDVLINDEGTLIAVRAAGGQLVFSDFRKARFTREVWGEAFGGAAGEGRFPVAGASADGRLVCDGEG CLYRRPGLVIALPRTLGAAFEDRALADLVIVPFARFASPPPPLAPGRGPGWIIDRGDLIGGGAHALWIADDGQVTLRTVA GERGHRPWTGKPGPGDGAR >Mature_739_residues MRKQSEDDGQKEAGGVASFDEEEDIDPGPRIGPLARLLVAERAVWALWLPVALGLGIALYFSLKTEPPAWVAPAVLALLA LASPHVRARDGLTAASRGVMALVIGFCVAQAWALGVAAPVIEREGRPGLIEGRVVANEPLDRGWRMILDDLTIEGLEAAK TPRRIRLRLHPGQTGGVAPLPGSRIAVLGQLAPPPTPVAPGVFDFARGLWFERIGGVGFALGPLRGRGSLAEGPVPRIRA AIQGWRQGVTARIIAAEPTLHGPLTAALITGEQRAIDPEIQEAMRASGLSHLLAISGLNMSLAAGLMFVLVRGGLALWPR AALLWPIKKLAAAAALAGCAAYLVLSGAGVPAERAFIMTGLVLLAVLVDRTALSMRTLALAGVAVLLIAPESLMGASFQM SFAAVIALIATYGALGPQAGRWRAGGGGGMGRAAALYLGGVALSTVVATVATLPYGAYHFHRVALYGVVANMIAVPLTGF WVMPWCLVLLALMPFGLEGLAMAPLGWGLDGIVAVARWVGGWPGALLAIPDGPGWALGLVSLGGLWLCLWTRPWRLAGVV PILVGMTVPWLTPPPDVLINDEGTLIAVRAAGGQLVFSDFRKARFTREVWGEAFGGAAGEGRFPVAGASADGRLVCDGEG CLYRRPGLVIALPRTLGAAFEDRALADLVIVPFARFASPPPPLAPGRGPGWIIDRGDLIGGGAHALWIADDGQVTLRTVA GERGHRPWTGKPGPGDGAR
Specific function: The comE operon is required for the binding and uptake of transforming DNA. ComEC is required for internalization but is dispensable for DNA binding [H]
COG id: COG0658
COG function: function code R; Predicted membrane metal-binding protein
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: To H.influenzae REC2, N.gonorrhoeae ComA and E.coli YcaI [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001279 - InterPro: IPR004477 - InterPro: IPR004797 [H]
Pfam domain/function: PF03772 Competence; PF00753 Lactamase_B [H]
EC number: NA
Molecular weight: Translated: 76957; Mature: 76957
Theoretical pI: Translated: 9.61; Mature: 9.61
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRKQSEDDGQKEAGGVASFDEEEDIDPGPRIGPLARLLVAERAVWALWLPVALGLGIALY CCCCCCCCCHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEE FSLKTEPPAWVAPAVLALLALASPHVRARDGLTAASRGVMALVIGFCVAQAWALGVAAPV EEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH IEREGRPGLIEGRVVANEPLDRGWRMILDDLTIEGLEAAKTPRRIRLRLHPGQTGGVAPL HHCCCCCCEEECEEEECCCHHHHHHHHHHHHHHCCHHHHCCCEEEEEEECCCCCCCCCCC PGSRIAVLGQLAPPPTPVAPGVFDFARGLWFERIGGVGFALGPLRGRGSLAEGPVPRIRA CCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCHHHHHH AIQGWRQGVTARIIAAEPTLHGPLTAALITGEQRAIDPEIQEAMRASGLSHLLAISGLNM HHHHHHCCCEEEEEEECCCCCCCEEEEEEECCCCCCCHHHHHHHHHCCHHHHHHHCCCCH SLAAGLMFVLVRGGLALWPRAALLWPIKKLAAAAALAGCAAYLVLSGAGVPAERAFIMTG HHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH LVLLAVLVDRTALSMRTLALAGVAVLLIAPESLMGASFQMSFAAVIALIATYGALGPQAG HHHHHHHHHHHHHHHHHHHHHHHHEEEECCHHHCCCCHHHHHHHHHHHHHHHHCCCCCCC RWRAGGGGGMGRAAALYLGGVALSTVVATVATLPYGAYHFHRVALYGVVANMIAVPLTGF CEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH WVMPWCLVLLALMPFGLEGLAMAPLGWGLDGIVAVARWVGGWPGALLAIPDGPGWALGLV HHHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHH SLGGLWLCLWTRPWRLAGVVPILVGMTVPWLTPPPDVLINDEGTLIAVRAAGGQLVFSDF HHCCEEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCEEEEEECCCCHHHHHH RKARFTREVWGEAFGGAAGEGRFPVAGASADGRLVCDGEGCLYRRPGLVIALPRTLGAAF HHHHHHHHHHHHHHCCCCCCCCCCEECCCCCCEEEECCCCCEEECCCEEEEECHHHCCHH EDRALADLVIVPFARFASPPPPLAPGRGPGWIIDRGDLIGGGAHALWIADDGQVTLRTVA HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCEECCCCEEEEEECCCCEEEEEEC GERGHRPWTGKPGPGDGAR CCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MRKQSEDDGQKEAGGVASFDEEEDIDPGPRIGPLARLLVAERAVWALWLPVALGLGIALY CCCCCCCCCHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEE FSLKTEPPAWVAPAVLALLALASPHVRARDGLTAASRGVMALVIGFCVAQAWALGVAAPV EEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH IEREGRPGLIEGRVVANEPLDRGWRMILDDLTIEGLEAAKTPRRIRLRLHPGQTGGVAPL HHCCCCCCEEECEEEECCCHHHHHHHHHHHHHHCCHHHHCCCEEEEEEECCCCCCCCCCC PGSRIAVLGQLAPPPTPVAPGVFDFARGLWFERIGGVGFALGPLRGRGSLAEGPVPRIRA CCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCHHHHHH AIQGWRQGVTARIIAAEPTLHGPLTAALITGEQRAIDPEIQEAMRASGLSHLLAISGLNM HHHHHHCCCEEEEEEECCCCCCCEEEEEEECCCCCCCHHHHHHHHHCCHHHHHHHCCCCH SLAAGLMFVLVRGGLALWPRAALLWPIKKLAAAAALAGCAAYLVLSGAGVPAERAFIMTG HHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH LVLLAVLVDRTALSMRTLALAGVAVLLIAPESLMGASFQMSFAAVIALIATYGALGPQAG HHHHHHHHHHHHHHHHHHHHHHHHEEEECCHHHCCCCHHHHHHHHHHHHHHHHCCCCCCC RWRAGGGGGMGRAAALYLGGVALSTVVATVATLPYGAYHFHRVALYGVVANMIAVPLTGF CEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH WVMPWCLVLLALMPFGLEGLAMAPLGWGLDGIVAVARWVGGWPGALLAIPDGPGWALGLV HHHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHH SLGGLWLCLWTRPWRLAGVVPILVGMTVPWLTPPPDVLINDEGTLIAVRAAGGQLVFSDF HHCCEEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCEEEEEECCCCHHHHHH RKARFTREVWGEAFGGAAGEGRFPVAGASADGRLVCDGEGCLYRRPGLVIALPRTLGAAF HHHHHHHHHHHHHHCCCCCCCCCCEECCCCCCEEEECCCCCEEECCCEEEEECHHHCCHH EDRALADLVIVPFARFASPPPPLAPGRGPGWIIDRGDLIGGGAHALWIADDGQVTLRTVA HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCEECCCCEEEEEECCCCEEEEEEC GERGHRPWTGKPGPGDGAR CCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7968523; 8969508; 9384377 [H]