Click here to switch to the map view.

The map label for this gene is fecI [C]

Identifier: 83592774

GI number: 83592774

Start: 1701111

End: 1701632

Strand: Direct

Name: fecI [C]

Synonym: Rru_A1438

Alternate gene names: 83592774

Gene position: 1701111-1701632 (Clockwise)

Preceding gene: 83592773

Following gene: 83592775

Centisome position: 39.08

GC content: 65.71

Gene sequence:

>522_bases
TTGGGTGCGGAGCGGCCTTTCGGGTCTTTGGCGCAAGCCGTCGAGACCTATTACGATGATCTCAAGGCCTTTATTGTGCG
GCGGACCGGATCGCCCAGCCTTGCCGCCGATGTCGTGCAAGACACCTGGGTCAGGGCGGCTTCGGCCGAGATCGCGATGC
CCGACAACGTGCGCGCCTATCTCTACCGGATGGCGGCCAATCTGGCGATCGATCACCTGCGCCGCGATGGCGCCCGGGCC
CGCGGGCTTTGCGAAGAGACCCTTCTCGAGGATATTCCCAGCGCCGAGCCGGCGGTCGACCGCGTTGTCGCCGCCCGCCA
GGAACTGGCGATCCTGTCGCGCGCCGTCGCCGAACTTCCCGAGAAATGCCGTATCGTGTTTTTGCTCTATCGCGGCCGCG
GCCTGACGATGAAGCAGGTCGCCGCCCGCCTGGGGATCTCGGAAAAGGCGGTGGAAAAGCACATCGCCCGCGCCATGGTC
CATTGCCGCAAGCGCATGATCGACGCCGGACGAAGCCCCTGA

Upstream 100 bases:

>100_bases
CCTCTCCACGGCGGCGTTTTCATAAGGGGCCCCGCCCAAAGGTTTGCGAATAATTCTCAAAACCCCTATGGTCGCCCGGT
TGAAGGAGGGGAGCGGGACC

Downstream 100 bases:

>100_bases
GAAAACAAATCCACCCGGTGGGGTAGGGGATCGGGGGGTGCCGATCGTCTTGGAGGAAGGGGGCGAAGAGAAATGGCAGG
CGAAGGTGGCGGGCCCGGAG

Product: sigma-24 (FecI)

Products: NA

Alternate protein names: ECF Subfamily RNA Polymerase Sigma Factor; RNA Polymerase Sigma Factor; RNA Polymerase Sigma-24 Subunit ECF Subfamily; Sigma-; RNA Polymerase Sigma Factor FecI; ECF Subfamily RNA Polymerase Sigma-70 Factor; RNA Polymerase Sigma Factor Sigma-70 Family; RNA Polymerase Sigma-24 Factor; Extracytoplasmic-Function Sigma-70 Factor; RNA Polymerase Sigma-24 Subunit Ecf Subfamily; Fec I Like Protein; RNA Polymerase Sigma-70 Family Protein; Sigma-70 Family RNA Polymerase Sigma Factor; ECF Family Sigma Factor; RNA Polymerase Sigma-70 Factor ECF Subfamily; RNA Polymerase ECF-Type Sigma Factor; Sigma Factor; Anti-FecI Sigma Factor FecR; RNA Polymerase ECF-Subfamily Sigma-70 Factor; RNA Polymerase Sigma Factor FecI Family; RNA Polymerase Sigma Factor Sigma-70 Family Protein; Extracytoplasmic Function Sigma Factor Protein; DNA-Directed RNA Polymeracialized Sigma Subunit; RNA Polymerase Sigma-70 Factor FecI; RNA Polymerase Sigma-70 Factor; FecI-Like Protein; Two-Component System Regulatory Protein; RNA Polymerase ECF-Type Sigma Factor FecI; Transcriptional Regulator LuxR Family; ECF Family RNA Polymerase Sigma-70 Factor; FecI-Like Sigma-; Ferric Regulator Sigma-24 Subunit; Extracytoplasmic Function Sigma; DNA-Directed RNA Polymerase Sigma-E/Sigma-24/FecI; FecI Like Protein; PpiC-Type Peptidyl-Prolyl Cis-Trans Isomerase; Extracytoplasmic-Function Sigma-70 Factor PvdS; RNA Polymerase Sigma Factor Protein; RNA Polymerase Sigma-70 Factor Ecf Subfamily; RNA Polymerase Sigma Factor ECF Subfamily; RNA Polymerase Sigma-70 Factor ECF Family Protein; ECF Sigma Factor; ECF Family RNA Polymerase Sigma Factor; ECF-Sigma Factor; ECF Sigma Factor FecI Family; ECF-Type RNA Polymerase Sigma Factor

Number of amino acids: Translated: 173; Mature: 172

Protein sequence:

>173_residues
MGAERPFGSLAQAVETYYDDLKAFIVRRTGSPSLAADVVQDTWVRAASAEIAMPDNVRAYLYRMAANLAIDHLRRDGARA
RGLCEETLLEDIPSAEPAVDRVVAARQELAILSRAVAELPEKCRIVFLLYRGRGLTMKQVAARLGISEKAVEKHIARAMV
HCRKRMIDAGRSP

Sequences:

>Translated_173_residues
MGAERPFGSLAQAVETYYDDLKAFIVRRTGSPSLAADVVQDTWVRAASAEIAMPDNVRAYLYRMAANLAIDHLRRDGARA
RGLCEETLLEDIPSAEPAVDRVVAARQELAILSRAVAELPEKCRIVFLLYRGRGLTMKQVAARLGISEKAVEKHIARAMV
HCRKRMIDAGRSP
>Mature_172_residues
GAERPFGSLAQAVETYYDDLKAFIVRRTGSPSLAADVVQDTWVRAASAEIAMPDNVRAYLYRMAANLAIDHLRRDGARAR
GLCEETLLEDIPSAEPAVDRVVAARQELAILSRAVAELPEKCRIVFLLYRGRGLTMKQVAARLGISEKAVEKHIARAMVH
CRKRMIDAGRSP

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Regulates The Fec Genes For Iron Dicitrate Transport (Probable). [C]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1790746, Length=149, Percent_Identity=28.8590604026846, Blast_Score=62, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19133; Mature: 19002

Theoretical pI: Translated: 9.52; Mature: 9.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGAERPFGSLAQAVETYYDDLKAFIVRRTGSPSLAADVVQDTWVRAASAEIAMPDNVRAY
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHH
LYRMAANLAIDHLRRDGARARGLCEETLLEDIPSAEPAVDRVVAARQELAILSRAVAELP
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
EKCRIVFLLYRGRGLTMKQVAARLGISEKAVEKHIARAMVHCRKRMIDAGRSP
HHHEEEEEEECCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
GAERPFGSLAQAVETYYDDLKAFIVRRTGSPSLAADVVQDTWVRAASAEIAMPDNVRAY
CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHH
LYRMAANLAIDHLRRDGARARGLCEETLLEDIPSAEPAVDRVVAARQELAILSRAVAELP
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
EKCRIVFLLYRGRGLTMKQVAARLGISEKAVEKHIARAMVHCRKRMIDAGRSP
HHHEEEEEEECCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA