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The map label for this gene is ydhC [H]

Identifier: 83592683

GI number: 83592683

Start: 1587539

End: 1588243

Strand: Reverse

Name: ydhC [H]

Synonym: Rru_A1347

Alternate gene names: 83592683

Gene position: 1588243-1587539 (Counterclockwise)

Preceding gene: 83592691

Following gene: 83592682

Centisome position: 36.49

GC content: 67.09

Gene sequence:

>705_bases
ATGACCTCTGAGCCCCAGGCCCCGCCCACAGCCCCGCTGACCGATGCCGCGCTTGCCGACGAGGGGGCGGCCAAGGCCGC
CGAACGCATCTATGGCGCCATCGTCGATAAGATCCTGGCCGGGACGATCAAGCCCGGTGACAGCCTGAACGAACTGGCCC
TGGCCGAGGCCTTCGGCGTTTCGCGCACGCCGGTTCGCGAAGCCCTGCAACACCTGAGCATCGCCGGTCTGGCCGAACGC
GGGGCGCGCCGGGCCTTCATGGTGCGCCGGCTTGATCTGGCGGAATTGGGCGATCTGTTCGAGACCATGGGCGAGATCGA
GGCGCTATGCGCCCAATACAGCGCCCGGCGGATGACGGCGATGGAACGGCGCAGCCTGGAAAGCACGGTCGCCGAGGGGG
CCGACATGGTCAAACGCGGCGATCAGGCCGCCTATACCCGGCTTAATGGCCGTTTTCATCAGGCGCTGTTCGATGGCGCC
CATAACGACAGCCTGCGCGACATCGCCCGGCTGGTTCGCGTGCGCACCGCCCCCTACCGGGAAGCCCAGTTCCGCCAGAC
CGACCGTCTGGCCTCGTCTCAGGGCGAACACGAAAAAATCCTGGCGGCGATTTTAAGCGAGAACGCCCAGGAGGCCTTGT
CGGCGATGCGCACCCACGTCGCGGCGACGGCGATGAACGTCACCCGCATGCTCTCGAAGCGCTAG

Upstream 100 bases:

>100_bases
CGTCACCGCGTCCCCGCTCTGTGCGTTTTTCGGAATTCAGATGCGTCAGGCTAGTGCGATATGTATACATATCTCAAGAA
AAATATATCGAGAACAGGTG

Downstream 100 bases:

>100_bases
AGCGGGATGGCGAAAAGTGTGCGCGGTTTTCGCCTAAGATCCCGCTCTAACATTTAGATTTAGATCAGGATTCAGATTTC
AGGTCGATCAGACCTGAAAT

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 234; Mature: 233

Protein sequence:

>234_residues
MTSEPQAPPTAPLTDAALADEGAAKAAERIYGAIVDKILAGTIKPGDSLNELALAEAFGVSRTPVREALQHLSIAGLAER
GARRAFMVRRLDLAELGDLFETMGEIEALCAQYSARRMTAMERRSLESTVAEGADMVKRGDQAAYTRLNGRFHQALFDGA
HNDSLRDIARLVRVRTAPYREAQFRQTDRLASSQGEHEKILAAILSENAQEALSAMRTHVAATAMNVTRMLSKR

Sequences:

>Translated_234_residues
MTSEPQAPPTAPLTDAALADEGAAKAAERIYGAIVDKILAGTIKPGDSLNELALAEAFGVSRTPVREALQHLSIAGLAER
GARRAFMVRRLDLAELGDLFETMGEIEALCAQYSARRMTAMERRSLESTVAEGADMVKRGDQAAYTRLNGRFHQALFDGA
HNDSLRDIARLVRVRTAPYREAQFRQTDRLASSQGEHEKILAAILSENAQEALSAMRTHVAATAMNVTRMLSKR
>Mature_233_residues
TSEPQAPPTAPLTDAALADEGAAKAAERIYGAIVDKILAGTIKPGDSLNELALAEAFGVSRTPVREALQHLSIAGLAERG
ARRAFMVRRLDLAELGDLFETMGEIEALCAQYSARRMTAMERRSLESTVAEGADMVKRGDQAAYTRLNGRFHQALFDGAH
NDSLRDIARLVRVRTAPYREAQFRQTDRLASSQGEHEKILAAILSENAQEALSAMRTHVAATAMNVTRMLSKR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 25492; Mature: 25361

Theoretical pI: Translated: 7.73; Mature: 7.73

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSEPQAPPTAPLTDAALADEGAAKAAERIYGAIVDKILAGTIKPGDSLNELALAEAFGV
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCC
SRTPVREALQHLSIAGLAERGARRAFMVRRLDLAELGDLFETMGEIEALCAQYSARRMTA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MERRSLESTVAEGADMVKRGDQAAYTRLNGRFHQALFDGAHNDSLRDIARLVRVRTAPYR
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCH
EAQFRQTDRLASSQGEHEKILAAILSENAQEALSAMRTHVAATAMNVTRMLSKR
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TSEPQAPPTAPLTDAALADEGAAKAAERIYGAIVDKILAGTIKPGDSLNELALAEAFGV
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCC
SRTPVREALQHLSIAGLAERGARRAFMVRRLDLAELGDLFETMGEIEALCAQYSARRMTA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MERRSLESTVAEGADMVKRGDQAAYTRLNGRFHQALFDGAHNDSLRDIARLVRVRTAPYR
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCH
EAQFRQTDRLASSQGEHEKILAAILSENAQEALSAMRTHVAATAMNVTRMLSKR
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]