| Definition | Rhodospirillum rubrum ATCC 11170 chromosome, complete genome. |
|---|---|
| Accession | NC_007643 |
| Length | 4,352,825 |
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The map label for this gene is 83592661
Identifier: 83592661
GI number: 83592661
Start: 1563702
End: 1564595
Strand: Direct
Name: 83592661
Synonym: Rru_A1325
Alternate gene names: NA
Gene position: 1563702-1564595 (Clockwise)
Preceding gene: 83592660
Following gene: 83592662
Centisome position: 35.92
GC content: 65.44
Gene sequence:
>894_bases ATGGACGTCACCGAAACCATGATGGGTAAGGGCCGCGAGGCGATCGACCTGATCGTCGATCCCCAGGGCTTTACCGAGAA TACCGTCGGCAGCAAGACCTTCGATGATCCCGAGTTCGGCCCCGGCGCCGTTGTCGGCACCGGTCTGCTCAACGGGCAGA CCTGCACGATCATCGCCAGCGATGGCAACGCCTTCAACGAGAAGTTCCCCGTCGTCTATGCCGGCATCATCGGCATGGAA GAGGGTTACAAGATGGCCCAGGCCGTCTATGCCTCGCTGGAAGCCGACGCCGACAAGCCGATCGCGCAGAAGCGCCCGCT GGTGCTGATCGTCGACACCCCGGGAAATGGTCCGGGCAAGACCGAAGAAATCTTCGGGATGAACAAGGCCACCGGCGCCT ATCAGCTGGCTTTGGCCGAGGCCCGGCTCGCCGGTCATCCGATCGTCGCCATGGTCATCGGCCGCGCCATCTCCGGCGCC TTCCTCTGCCATGGCCTCCAGGCCGACAACATCCTGTCGCTGGACGCCAATTTCGGCACGATGATCCACGTGATGCCGCT GACCAGCGTCTCGCGCATCATCCGCAAGGATCTGGAAACCCTTCAGGAACTCTCGAAGGGCAACCCGGTCTTCGCCGCCG GCCCGCGCTTCTTCTTCGCCTTGGGCGGGGTTGAGGAACTGGTGACCGCCATCGACGGCATGCGTCCGGCCATCATCGCC CATATCGAGTCGATCCGTCAGGCCAAGCTGGCCGGCAAGCAGGACAGCCTGGGCCCCTGGGGCCGTGGCGCCCTGGGCGC CGAGCGCGGCGGCCGGGTGGTTCGCCCCGAGCTGATCGCCTTGATGAACGCCGAGTTCGCCGCCGTGGCCAGCCAGTACG CCCCGGCCCGCTAA
Upstream 100 bases:
>100_bases CCCTGACCGACCTGCCGCTCGCCGACTTCCTCGCCCAGGTCAAGCGTCTGAGCGTCTGAGCCCGGCCGTCCGCCATAATT CCCCCTATCAGGAGTCAATC
Downstream 100 bases:
>100_bases CCTGATACGGCCCGAAAAAGGACGGTGATTCTCATGTCCGACGATCTGACGGTTCTCGAAGCGGCGCTCGACGCCTTCGG CAACGCTCCCACCCTGGGAG
Product: hypothetical protein
Products: NA
Alternate protein names: Malonate Decarboxylase Subunit Gamma; Malonate Decarboxylase Beta Subunit; LOW QUALITY PROTEIN Malonate Decarboxylase Gamma Subunit; Malonate Decarboxylase Subunit Beta/Gamma; Malonate Decarboxylase Subunit MdcE; Malonate Decarboxylase Gamma-Subunit; Beta Subunit Of Malonate Decarboxylase; Malonate Decarboxylase Gamma-Subunit MdcE; Subunit Beta Of Malonate Decarboxylase
Number of amino acids: Translated: 297; Mature: 297
Protein sequence:
>297_residues MDVTETMMGKGREAIDLIVDPQGFTENTVGSKTFDDPEFGPGAVVGTGLLNGQTCTIIASDGNAFNEKFPVVYAGIIGME EGYKMAQAVYASLEADADKPIAQKRPLVLIVDTPGNGPGKTEEIFGMNKATGAYQLALAEARLAGHPIVAMVIGRAISGA FLCHGLQADNILSLDANFGTMIHVMPLTSVSRIIRKDLETLQELSKGNPVFAAGPRFFFALGGVEELVTAIDGMRPAIIA HIESIRQAKLAGKQDSLGPWGRGALGAERGGRVVRPELIALMNAEFAAVASQYAPAR
Sequences:
>Translated_297_residues MDVTETMMGKGREAIDLIVDPQGFTENTVGSKTFDDPEFGPGAVVGTGLLNGQTCTIIASDGNAFNEKFPVVYAGIIGME EGYKMAQAVYASLEADADKPIAQKRPLVLIVDTPGNGPGKTEEIFGMNKATGAYQLALAEARLAGHPIVAMVIGRAISGA FLCHGLQADNILSLDANFGTMIHVMPLTSVSRIIRKDLETLQELSKGNPVFAAGPRFFFALGGVEELVTAIDGMRPAIIA HIESIRQAKLAGKQDSLGPWGRGALGAERGGRVVRPELIALMNAEFAAVASQYAPAR >Mature_297_residues MDVTETMMGKGREAIDLIVDPQGFTENTVGSKTFDDPEFGPGAVVGTGLLNGQTCTIIASDGNAFNEKFPVVYAGIIGME EGYKMAQAVYASLEADADKPIAQKRPLVLIVDTPGNGPGKTEEIFGMNKATGAYQLALAEARLAGHPIVAMVIGRAISGA FLCHGLQADNILSLDANFGTMIHVMPLTSVSRIIRKDLETLQELSKGNPVFAAGPRFFFALGGVEELVTAIDGMRPAIIA HIESIRQAKLAGKQDSLGPWGRGALGAERGGRVVRPELIALMNAEFAAVASQYAPAR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31328; Mature: 31328
Theoretical pI: Translated: 5.01; Mature: 5.01
Prosite motif: PS50989 COA_CT_CTER
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDVTETMMGKGREAIDLIVDPQGFTENTVGSKTFDDPEFGPGAVVGTGLLNGQTCTIIAS CCCHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEEC DGNAFNEKFPVVYAGIIGMEEGYKMAQAVYASLEADADKPIAQKRPLVLIVDTPGNGPGK CCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCHHHCCCEEEEEECCCCCCCC TEEIFGMNKATGAYQLALAEARLAGHPIVAMVIGRAISGAFLCHGLQADNILSLDANFGT CHHHHCCCCCCCCEEHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCC MIHVMPLTSVSRIIRKDLETLQELSKGNPVFAAGPRFFFALGGVEELVTAIDGMRPAIIA EEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEECCCEEEECCCHHHHHHHHCCCCHHHHH HIESIRQAKLAGKQDSLGPWGRGALGAERGGRVVRPELIALMNAEFAAVASQYAPAR HHHHHHHHHHCCCCCCCCCCCCCCCCHHCCCEEECHHHHHHHCCHHHHHHHHCCCCC >Mature Secondary Structure MDVTETMMGKGREAIDLIVDPQGFTENTVGSKTFDDPEFGPGAVVGTGLLNGQTCTIIAS CCCHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEEC DGNAFNEKFPVVYAGIIGMEEGYKMAQAVYASLEADADKPIAQKRPLVLIVDTPGNGPGK CCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCHHHCCCEEEEEECCCCCCCC TEEIFGMNKATGAYQLALAEARLAGHPIVAMVIGRAISGAFLCHGLQADNILSLDANFGT CHHHHCCCCCCCCEEHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCC MIHVMPLTSVSRIIRKDLETLQELSKGNPVFAAGPRFFFALGGVEELVTAIDGMRPAIIA EEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEECCCEEEECCCHHHHHHHHCCCCHHHHH HIESIRQAKLAGKQDSLGPWGRGALGAERGGRVVRPELIALMNAEFAAVASQYAPAR HHHHHHHHHHCCCCCCCCCCCCCCCCHHCCCEEECHHHHHHHCCHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA