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The map label for this gene is gatR [H]

Identifier: 83592601

GI number: 83592601

Start: 1486267

End: 1487124

Strand: Direct

Name: gatR [H]

Synonym: Rru_A1265

Alternate gene names: 83592601

Gene position: 1486267-1487124 (Clockwise)

Preceding gene: 83592593

Following gene: 83592602

Centisome position: 34.14

GC content: 63.99

Gene sequence:

>858_bases
GTGGATAAGGGGTCCGAGGAACTGCAAGGTCAGGATGGCGGGCAGGGACGGCGCCCCGGCGCGGCGCGGCGCGCCGCGGT
TCAAGAAGTTTTGCAAGAAAGCGGCTATGCCACCGTCGCCGATCTCGCCCGCCGGCTTGAGGTCTCGGAGATGACGATCC
GCCGCGATCTTTCGGTGATGGAAGAGGACGGCGCCGTGGTGCGCACCCATGGTGGGGCGCTGTCGGTCAGCGTCGAGCGC
GAAGGGGCCTTCGACCGCGAAGAGCCGGCCTTCGAGCAACGCCGCCGCCAGCGCGCCGATGTCAAGCAACGCATCGCCCA
GGCTGCGGCCAGATTGGCCTATCCGCGCGGCATCATCGGCCTCGATTCGGGGACCTCGTCGCTGGCCCTGGCCGAAGAGC
TGGCCCAAGAATCCGATCTTCGCGTGTTCACCAATAATATACGGGCGTCTACGGCCCTGGTTGAATCGAGGAATTTGGTC
TACCTGCTTGGTGGGCAAGTTCGCCATCCTGAAATGTCGGTCATCGGGCCGATGACGGTCAATCAGATCAGGGGGTATTA
CTTCGATCAGTTCTTTGTTGGGTTGTCTGGGTGTGGTCCTGCCGGGATTTTTGATTATTCCCTGGAAGATACCGAGGTCA
AGCAGGCGTTCATCGAACGCTCGGGCACGGTGATCGCGCTGTGCGATTCCAGCAAGTTCGGCCGTCACGCCCTTGCCCAG
ATCTGTCCCCTCGACCGTATCGACATCCTGGTGACCGATGCGCCGCCGCCGCCGCCCTTGGCCCAGGCCCTGGTTTTGGC
CGAGGTGCGGGTGATTCTCGCCGACCCCGCCGAGGGGCCCGACCTGCCGCCCAACTGA

Upstream 100 bases:

>100_bases
CAATCTTCCAAGTTCGATTTTGTTCTGCTATGTTTGATATCGAACAGATGCGGGGCTTATCGAGCCGACGTGTGAGGATA
AACGATCACAGGGGGACGAT

Downstream 100 bases:

>100_bases
CCTTATCGCCGGCCGCCGGCCCGTCGGCGGTTTCCCTGTCTGGAGACGACCATGATTTTTGATTTCCTCGGTCCCCGTAA
AAAAGCGGTTATCGCCATGG

Product: DeoR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 285; Mature: 285

Protein sequence:

>285_residues
MDKGSEELQGQDGGQGRRPGAARRAAVQEVLQESGYATVADLARRLEVSEMTIRRDLSVMEEDGAVVRTHGGALSVSVER
EGAFDREEPAFEQRRRQRADVKQRIAQAAARLAYPRGIIGLDSGTSSLALAEELAQESDLRVFTNNIRASTALVESRNLV
YLLGGQVRHPEMSVIGPMTVNQIRGYYFDQFFVGLSGCGPAGIFDYSLEDTEVKQAFIERSGTVIALCDSSKFGRHALAQ
ICPLDRIDILVTDAPPPPPLAQALVLAEVRVILADPAEGPDLPPN

Sequences:

>Translated_285_residues
MDKGSEELQGQDGGQGRRPGAARRAAVQEVLQESGYATVADLARRLEVSEMTIRRDLSVMEEDGAVVRTHGGALSVSVER
EGAFDREEPAFEQRRRQRADVKQRIAQAAARLAYPRGIIGLDSGTSSLALAEELAQESDLRVFTNNIRASTALVESRNLV
YLLGGQVRHPEMSVIGPMTVNQIRGYYFDQFFVGLSGCGPAGIFDYSLEDTEVKQAFIERSGTVIALCDSSKFGRHALAQ
ICPLDRIDILVTDAPPPPPLAQALVLAEVRVILADPAEGPDLPPN
>Mature_285_residues
MDKGSEELQGQDGGQGRRPGAARRAAVQEVLQESGYATVADLARRLEVSEMTIRRDLSVMEEDGAVVRTHGGALSVSVER
EGAFDREEPAFEQRRRQRADVKQRIAQAAARLAYPRGIIGLDSGTSSLALAEELAQESDLRVFTNNIRASTALVESRNLV
YLLGGQVRHPEMSVIGPMTVNQIRGYYFDQFFVGLSGCGPAGIFDYSLEDTEVKQAFIERSGTVIALCDSSKFGRHALAQ
ICPLDRIDILVTDAPPPPPLAQALVLAEVRVILADPAEGPDLPPN

Specific function: Repressor of the gat operon for galacticol transport and metabolism [H]

COG id: COG1349

COG function: function code KG; Transcriptional regulators of sugar metabolism

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789829, Length=246, Percent_Identity=31.7073170731707, Blast_Score=126, Evalue=2e-30,
Organism=Escherichia coli, GI1789059, Length=255, Percent_Identity=31.7647058823529, Blast_Score=122, Evalue=2e-29,
Organism=Escherichia coli, GI1789519, Length=263, Percent_Identity=30.0380228136882, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI226510968, Length=253, Percent_Identity=31.6205533596838, Blast_Score=119, Evalue=3e-28,
Organism=Escherichia coli, GI1788069, Length=235, Percent_Identity=29.3617021276596, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1787540, Length=236, Percent_Identity=29.6610169491525, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI87082344, Length=256, Percent_Identity=26.171875, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1790635, Length=246, Percent_Identity=26.0162601626016, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI1789170, Length=236, Percent_Identity=27.1186440677966, Blast_Score=81, Evalue=7e-17,
Organism=Escherichia coli, GI1790753, Length=250, Percent_Identity=26.8, Blast_Score=71, Evalue=6e-14,
Organism=Escherichia coli, GI1787063, Length=229, Percent_Identity=26.6375545851528, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014036
- InterPro:   IPR001034
- InterPro:   IPR018356
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00455 DeoR; PF08220 HTH_DeoR [H]

EC number: NA

Molecular weight: Translated: 30914; Mature: 30914

Theoretical pI: Translated: 4.71; Mature: 4.71

Prosite motif: PS00894 HTH_DEOR_1 ; PS51000 HTH_DEOR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKGSEELQGQDGGQGRRPGAARRAAVQEVLQESGYATVADLARRLEVSEMTIRRDLSVM
CCCCCCHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
EEDGAVVRTHGGALSVSVEREGAFDREEPAFEQRRRQRADVKQRIAQAAARLAYPRGIIG
HCCCCEEEECCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEE
LDSGTSSLALAEELAQESDLRVFTNNIRASTALVESRNLVYLLGGQVRHPEMSVIGPMTV
CCCCCCHHHHHHHHHCCCCCEEECCCHHHHHHHCCCCCEEEEECCEECCCCCEEECCCHH
NQIRGYYFDQFFVGLSGCGPAGIFDYSLEDTEVKQAFIERSGTVIALCDSSKFGRHALAQ
HHHHHHHHHHHHHHCCCCCCCCEEECCCCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHH
ICPLDRIDILVTDAPPPPPLAQALVLAEVRVILADPAEGPDLPPN
HCCCCCEEEEEECCCCCCHHHHHHHHHHHHHEEECCCCCCCCCCC
>Mature Secondary Structure
MDKGSEELQGQDGGQGRRPGAARRAAVQEVLQESGYATVADLARRLEVSEMTIRRDLSVM
CCCCCCHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
EEDGAVVRTHGGALSVSVEREGAFDREEPAFEQRRRQRADVKQRIAQAAARLAYPRGIIG
HCCCCEEEECCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEE
LDSGTSSLALAEELAQESDLRVFTNNIRASTALVESRNLVYLLGGQVRHPEMSVIGPMTV
CCCCCCHHHHHHHHHCCCCCEEECCCHHHHHHHCCCCCEEEEECCEECCCCCEEECCCHH
NQIRGYYFDQFFVGLSGCGPAGIFDYSLEDTEVKQAFIERSGTVIALCDSSKFGRHALAQ
HHHHHHHHHHHHHHCCCCCCCCEEECCCCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHH
ICPLDRIDILVTDAPPPPPLAQALVLAEVRVILADPAEGPDLPPN
HCCCCCEEEEEECCCCCCHHHHHHHHHHHHHEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097040; 9278503; 7772602; 1661252 [H]