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The map label for this gene is sucC

Identifier: 83592547

GI number: 83592547

Start: 1428960

End: 1430159

Strand: Direct

Name: sucC

Synonym: Rru_A1211

Alternate gene names: 83592547

Gene position: 1428960-1430159 (Clockwise)

Preceding gene: 83592546

Following gene: 83592548

Centisome position: 32.83

GC content: 61.75

Gene sequence:

>1200_bases
ATGAACATTCATGAGTATCAGGCCAAGCAGGTCTTGGCCAAGTACGGGGTTCCCGTGCTCAAGGGAGGCGTGGCCTATAC
CGCCGAGGAGGCGGAAAAGGTCGCTCTGGACCTGGCTGGTCCGGTCTACGTGGTGAAATCGCAGATCCACGCCGGTGGCC
GCGGCAAAGGTCACTTCAAGGAACCCTCGGCCGGCGACAAAGGCGGCGTGCGCGTCGTCAAGTCGACGGACGAGGTGTTT
TCCAACGCCAAGCAGATGCTGGGCGCCACCCTGGTCACCCACCAGTCGGGGGCCGAGGGCAAGGAAGTCAAGCGCGTCTA
TATCGAAGACGGCTGCGACATCAAGCGCGAGCTTTATCTGTCGCTGCTCGTCGATCGGGCGACCTCGGCCGTGACCGTGA
TGGCCTCGACCGAGGGCGGCATGGACATCGAGGAGGTCGCCAACCATTCCCCGGAGAAGATCTTCTTCCAGGCCATCGAT
CAGGCCACCGGGATTTCCGGCTTCCACTGCCGCAACGTGGCGTTCTCGCTGGGTCTGGAAGGCAAGCAGGTCGGCGCCTT
CACCAAGCTGCTGAGCGCGCTTTACAAGTGCTTCACCGAAACCGATTGCTCGATGCTGGAGATCAACCCGCTGGTGGTCA
CCGGCGACGGTCAGGTGATCCCGCTCGATTGCAAGATGAACTTCGATTCCAACGCCCTCTATCGTCATCCCGATATCGTC
GAATACCGCGATGAGGACGAAGAGGATCCGATGGAGCTGGAGGCGTCGAAGCACGACCTCAATTACATCAAGCTCGATGG
CTCGATCGGCTGCATGGTCAACGGCGCCGGTCTGGCCATGGCGACCATGGACATCATCAAGCTCAAGGGCGGCGCGCCGG
CCAATTTCCTTGACGTCGGAGGGGGCGCCACCCGCGAACGCGTCACCGCCGCCTTCAAGATCATCCTGTCCGACCCCAAT
GTCGACGGTATCCTGGTCAATATCTTCGGCGGCATCATGCGCTGCGACGTCATCGCCGAGGGGGTGATCGCCGCCGCCCG
CGAAGTGTCGCTGAACGTGCCGCTGGTGGTGCGCCTGGAAGGCACGAACGTCGAACTCGGCAAGAAGATCATGGTCGAGT
CCGGCCTGCCGATCATTTCGGCGGATAATTTGGCCGACGCCGCCGAAAAGGTGGTCAAGGCGGTGAAGGAGGCTTCCTGA

Upstream 100 bases:

>100_bases
TCGACAGCGTGCGCGGGCTGATCGCCGCGTCGAAGGAACTGATGCCGAAATAAGCCGCAATAAGCCGCGAAAGCCGGCGG
ACCAGGAGAGGCGAAGCTCT

Downstream 100 bases:

>100_bases
TGTCTGTTCTCGTCAGCAACGACACCAAGGTCATCTGCCAGGGCTTCACCGGCTCCCAGGGGACTTTCCACTCCGAGCAG
GCCATCGCCTATGGCACCAA

Product: succinyl-CoA synthetase (ADP-forming) subunit beta

Products: NA

Alternate protein names: Succinyl-CoA synthetase subunit beta; SCS-beta

Number of amino acids: Translated: 399; Mature: 399

Protein sequence:

>399_residues
MNIHEYQAKQVLAKYGVPVLKGGVAYTAEEAEKVALDLAGPVYVVKSQIHAGGRGKGHFKEPSAGDKGGVRVVKSTDEVF
SNAKQMLGATLVTHQSGAEGKEVKRVYIEDGCDIKRELYLSLLVDRATSAVTVMASTEGGMDIEEVANHSPEKIFFQAID
QATGISGFHCRNVAFSLGLEGKQVGAFTKLLSALYKCFTETDCSMLEINPLVVTGDGQVIPLDCKMNFDSNALYRHPDIV
EYRDEDEEDPMELEASKHDLNYIKLDGSIGCMVNGAGLAMATMDIIKLKGGAPANFLDVGGGATRERVTAAFKIILSDPN
VDGILVNIFGGIMRCDVIAEGVIAAAREVSLNVPLVVRLEGTNVELGKKIMVESGLPIISADNLADAAEKVVKAVKEAS

Sequences:

>Translated_399_residues
MNIHEYQAKQVLAKYGVPVLKGGVAYTAEEAEKVALDLAGPVYVVKSQIHAGGRGKGHFKEPSAGDKGGVRVVKSTDEVF
SNAKQMLGATLVTHQSGAEGKEVKRVYIEDGCDIKRELYLSLLVDRATSAVTVMASTEGGMDIEEVANHSPEKIFFQAID
QATGISGFHCRNVAFSLGLEGKQVGAFTKLLSALYKCFTETDCSMLEINPLVVTGDGQVIPLDCKMNFDSNALYRHPDIV
EYRDEDEEDPMELEASKHDLNYIKLDGSIGCMVNGAGLAMATMDIIKLKGGAPANFLDVGGGATRERVTAAFKIILSDPN
VDGILVNIFGGIMRCDVIAEGVIAAAREVSLNVPLVVRLEGTNVELGKKIMVESGLPIISADNLADAAEKVVKAVKEAS
>Mature_399_residues
MNIHEYQAKQVLAKYGVPVLKGGVAYTAEEAEKVALDLAGPVYVVKSQIHAGGRGKGHFKEPSAGDKGGVRVVKSTDEVF
SNAKQMLGATLVTHQSGAEGKEVKRVYIEDGCDIKRELYLSLLVDRATSAVTVMASTEGGMDIEEVANHSPEKIFFQAID
QATGISGFHCRNVAFSLGLEGKQVGAFTKLLSALYKCFTETDCSMLEINPLVVTGDGQVIPLDCKMNFDSNALYRHPDIV
EYRDEDEEDPMELEASKHDLNYIKLDGSIGCMVNGAGLAMATMDIIKLKGGAPANFLDVGGGATRERVTAAFKIILSDPN
VDGILVNIFGGIMRCDVIAEGVIAAAREVSLNVPLVVRLEGTNVELGKKIMVESGLPIISADNLADAAEKVVKAVKEAS

Specific function: Tricarboxylic acid cycle. [C]

COG id: COG0045

COG function: function code C; Succinyl-CoA synthetase, beta subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ATP-grasp domain

Homologues:

Organism=Homo sapiens, GI157779135, Length=386, Percent_Identity=48.1865284974093, Blast_Score=347, Evalue=9e-96,
Organism=Homo sapiens, GI11321583, Length=393, Percent_Identity=45.8015267175573, Blast_Score=343, Evalue=2e-94,
Organism=Homo sapiens, GI294862256, Length=365, Percent_Identity=47.6712328767123, Blast_Score=326, Evalue=3e-89,
Organism=Escherichia coli, GI1786948, Length=396, Percent_Identity=54.2929292929293, Blast_Score=408, Evalue=1e-115,
Organism=Caenorhabditis elegans, GI17539378, Length=395, Percent_Identity=48.6075949367089, Blast_Score=370, Evalue=1e-103,
Organism=Caenorhabditis elegans, GI17567829, Length=392, Percent_Identity=47.9591836734694, Blast_Score=352, Evalue=2e-97,
Organism=Saccharomyces cerevisiae, GI6321683, Length=396, Percent_Identity=47.979797979798, Blast_Score=355, Evalue=7e-99,
Organism=Drosophila melanogaster, GI21356231, Length=396, Percent_Identity=47.7272727272727, Blast_Score=352, Evalue=2e-97,
Organism=Drosophila melanogaster, GI161078106, Length=392, Percent_Identity=46.9387755102041, Blast_Score=347, Evalue=6e-96,
Organism=Drosophila melanogaster, GI24645208, Length=392, Percent_Identity=46.9387755102041, Blast_Score=347, Evalue=6e-96,
Organism=Drosophila melanogaster, GI281361397, Length=393, Percent_Identity=47.0737913486005, Blast_Score=346, Evalue=2e-95,
Organism=Drosophila melanogaster, GI281361395, Length=393, Percent_Identity=47.0737913486005, Blast_Score=346, Evalue=2e-95,

Paralogues:

None

Copy number: 340 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 2361 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 3,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): SUCC_RHORT (Q2RV33)

Other databases:

- EMBL:   CP000230
- RefSeq:   YP_426299.1
- HSSP:   P53590
- ProteinModelPortal:   Q2RV33
- SMR:   Q2RV33
- STRING:   Q2RV33
- GeneID:   3833709
- GenomeReviews:   CP000230_GR
- KEGG:   rru:Rru_A1211
- NMPDR:   fig|1085.1.peg.3155
- eggNOG:   COG0045
- HOGENOM:   HBG315432
- OMA:   NPLIVMK
- PhylomeDB:   Q2RV33
- BioCyc:   RRUB269796:RRU_A1211-MONOMER
- HAMAP:   MF_00558
- InterPro:   IPR011761
- InterPro:   IPR013650
- InterPro:   IPR013815
- InterPro:   IPR013816
- InterPro:   IPR005811
- InterPro:   IPR017866
- InterPro:   IPR005809
- InterPro:   IPR016102
- Gene3D:   G3DSA:3.30.1490.20
- Gene3D:   G3DSA:3.30.470.20
- Gene3D:   G3DSA:3.40.50.261
- PANTHER:   PTHR11815
- TIGRFAMs:   TIGR01016

Pfam domain/function: PF08442 ATP-grasp_2; PF00549 Ligase_CoA; SSF52210 CoA_ligase

EC number: =6.2.1.5

Molecular weight: Translated: 42609; Mature: 42609

Theoretical pI: Translated: 4.86; Mature: 4.86

Prosite motif: PS50975 ATP_GRASP; PS01217 SUCCINYL_COA_LIG_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIHEYQAKQVLAKYGVPVLKGGVAYTAEEAEKVALDLAGPVYVVKSQIHAGGRGKGHFK
CCCHHHHHHHHHHHCCCCEEECCEEEEHHHHHHEEEECCCCEEEEEEHHCCCCCCCCCCC
EPSAGDKGGVRVVKSTDEVFSNAKQMLGATLVTHQSGAEGKEVKRVYIEDGCDIKRELYL
CCCCCCCCCEEEEECHHHHHHHHHHHHHHHEEECCCCCCCCCEEEEEECCCCCHHHHHHH
SLLVDRATSAVTVMASTEGGMDIEEVANHSPEKIFFQAIDQATGISGFHCRNVAFSLGLE
HHHHHCCCCEEEEEEECCCCCCHHHHHCCCCHHHHHHHHHHHCCCCCEEECCEEEECCCC
GKQVGAFTKLLSALYKCFTETDCSMLEINPLVVTGDGQVIPLDCKMNFDSNALYRHPDIV
CCHHHHHHHHHHHHHHHHCCCCCCEEEECEEEEECCCEEEEEEEEECCCCCCEECCCCCE
EYRDEDEEDPMELEASKHDLNYIKLDGSIGCMVNGAGLAMATMDIIKLKGGAPANFLDVG
ECCCCCCCCCCEEECCCCCCEEEEECCCEEEEEECCCHHHHEEEEEEECCCCCCCEEECC
GGATRERVTAAFKIILSDPNVDGILVNIFGGIMRCDVIAEGVIAAAREVSLNVPLVVRLE
CCCHHHHHEEEEEEEEECCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHEECCCCEEEEEC
GTNVELGKKIMVESGLPIISADNLADAAEKVVKAVKEAS
CCCCCCCCEEEEECCCCEEECCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNIHEYQAKQVLAKYGVPVLKGGVAYTAEEAEKVALDLAGPVYVVKSQIHAGGRGKGHFK
CCCHHHHHHHHHHHCCCCEEECCEEEEHHHHHHEEEECCCCEEEEEEHHCCCCCCCCCCC
EPSAGDKGGVRVVKSTDEVFSNAKQMLGATLVTHQSGAEGKEVKRVYIEDGCDIKRELYL
CCCCCCCCCEEEEECHHHHHHHHHHHHHHHEEECCCCCCCCCEEEEEECCCCCHHHHHHH
SLLVDRATSAVTVMASTEGGMDIEEVANHSPEKIFFQAIDQATGISGFHCRNVAFSLGLE
HHHHHCCCCEEEEEEECCCCCCHHHHHCCCCHHHHHHHHHHHCCCCCEEECCEEEECCCC
GKQVGAFTKLLSALYKCFTETDCSMLEINPLVVTGDGQVIPLDCKMNFDSNALYRHPDIV
CCHHHHHHHHHHHHHHHHCCCCCCEEEECEEEEECCCEEEEEEEEECCCCCCEECCCCCE
EYRDEDEEDPMELEASKHDLNYIKLDGSIGCMVNGAGLAMATMDIIKLKGGAPANFLDVG
ECCCCCCCCCCEEECCCCCCEEEEECCCEEEEEECCCHHHHEEEEEEECCCCCCCEEECC
GGATRERVTAAFKIILSDPNVDGILVNIFGGIMRCDVIAEGVIAAAREVSLNVPLVVRLE
CCCHHHHHEEEEEEEEECCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHEECCCCEEEEEC
GTNVELGKKIMVESGLPIISADNLADAAEKVVKAVKEAS
CCCCCCCCEEEEECCCCEEECCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA