Click here to switch to the map view.

The map label for this gene is pdxY [H]

Identifier: 83592535

GI number: 83592535

Start: 1416699

End: 1417574

Strand: Reverse

Name: pdxY [H]

Synonym: Rru_A1199

Alternate gene names: 83592535

Gene position: 1417574-1416699 (Counterclockwise)

Preceding gene: 83592542

Following gene: 83592534

Centisome position: 32.57

GC content: 71.92

Gene sequence:

>876_bases
ATGCCCGTTCTGTCCATTCAGTCCCATGTTTGCGCCGGCCATGTCGGCAATGCCGCGGCCGTTCCCGCCCTGCAGGCCCT
GGGTCGCGAGCCGATCGCCCTCAATACGGTGGCCTTCGCCCATCACCCGGGACGCGGTCGGCCCGCCGGGCGCGTCACCC
CGGCCGAAGAGCTGGCGACCCTGCTGGCCGCCTTGCGCCCGCTCGATGAATTCCGCCGCTGTAAGGCCCTGCTCTCGGGA
TACCTGGGGCGGCCCGATACGGCCGAGGTGGTGGCCGAGGCCATCGATAGCCTGCGCGCCATCACCCCCCGGGCCCTGGT
CGTCTGTGATCCGGTGCTCGGCGATACCGACAAGGGGCTTTATGTCGATCCCGCCCTGCCCGGGCGGGTCGGCGCGCTGT
TGGTGCCGCGCGCCGACATTTTGATGCCCAACGCCTTTGAACTGGCGATTCTCAGCGGCCGCGCCCCGCCGCTCGCCGAT
CTCGGCGCCATTCTCGAGGCCGCCCGCGCCTTGGTCGGCCAAGGGCCGCGCGCCGTCATCGTCACCAGCCTGCCTTTCGA
GGACGGCGGGATCGGCGATCTGCTGGTCACCGCGACGGCAAGCTGGCTGGCCCGCGGCCCGCTGATCGCCGGAGTGGCCG
GGATCAAGGGAACGGGAGACCTGTTGTCGGCGCTGCTTGTTGGCCATCTGCTAAGGGACGCGGGCGATCCGTGGCATCCC
CAGGCCCTGCCCCGCGCCCTGGCGCTGGCCGTTGCCGGGGTGCGCCTGGTGCTTGGCGCCACGGCGGGAAGCGGGCGCGG
TGAAATGGCCCTGGTGCGCTGCCTGCCCGCCCTCGCCTCGCCGCTGGACCCCGTGCCGATCGCGCCGCTGGCATGA

Upstream 100 bases:

>100_bases
TCTCTTTGACCAAGCGTATTCATCGTTTCGTCGACTGGCAAGGCTCCCGCACCGCGAAAGCCGCCCTTCTCCTCCCGTCA
CGAATGAAAATTGCCCTGCC

Downstream 100 bases:

>100_bases
AGAAAGCCGGCCGGTTTTATTTGCCCCCGACCGGGCCGAAGGCTATCAGAAGGCCGCCGGTGGCGCAGAGCGTCCGGAAC
CGCGAGGAAGGATCGATAAA

Product: pyridoxal kinase

Products: NA

Alternate protein names: PM kinase [H]

Number of amino acids: Translated: 291; Mature: 290

Protein sequence:

>291_residues
MPVLSIQSHVCAGHVGNAAAVPALQALGREPIALNTVAFAHHPGRGRPAGRVTPAEELATLLAALRPLDEFRRCKALLSG
YLGRPDTAEVVAEAIDSLRAITPRALVVCDPVLGDTDKGLYVDPALPGRVGALLVPRADILMPNAFELAILSGRAPPLAD
LGAILEAARALVGQGPRAVIVTSLPFEDGGIGDLLVTATASWLARGPLIAGVAGIKGTGDLLSALLVGHLLRDAGDPWHP
QALPRALALAVAGVRLVLGATAGSGRGEMALVRCLPALASPLDPVPIAPLA

Sequences:

>Translated_291_residues
MPVLSIQSHVCAGHVGNAAAVPALQALGREPIALNTVAFAHHPGRGRPAGRVTPAEELATLLAALRPLDEFRRCKALLSG
YLGRPDTAEVVAEAIDSLRAITPRALVVCDPVLGDTDKGLYVDPALPGRVGALLVPRADILMPNAFELAILSGRAPPLAD
LGAILEAARALVGQGPRAVIVTSLPFEDGGIGDLLVTATASWLARGPLIAGVAGIKGTGDLLSALLVGHLLRDAGDPWHP
QALPRALALAVAGVRLVLGATAGSGRGEMALVRCLPALASPLDPVPIAPLA
>Mature_290_residues
PVLSIQSHVCAGHVGNAAAVPALQALGREPIALNTVAFAHHPGRGRPAGRVTPAEELATLLAALRPLDEFRRCKALLSGY
LGRPDTAEVVAEAIDSLRAITPRALVVCDPVLGDTDKGLYVDPALPGRVGALLVPRADILMPNAFELAILSGRAPPLADL
GAILEAARALVGQGPRAVIVTSLPFEDGGIGDLLVTATASWLARGPLIAGVAGIKGTGDLLSALLVGHLLRDAGDPWHPQ
ALPRALALAVAGVRLVLGATAGSGRGEMALVRCLPALASPLDPVPIAPLA

Specific function: Phosphorylates B6 vitamers; functions in a salvage pathway. Uses pyridoxamine [H]

COG id: COG2240

COG function: function code H; Pyridoxal/pyridoxine/pyridoxamine kinase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the pyridoxine kinase family [H]

Homologues:

Organism=Homo sapiens, GI4505701, Length=283, Percent_Identity=34.2756183745583, Blast_Score=120, Evalue=2e-27,
Organism=Escherichia coli, GI1787924, Length=283, Percent_Identity=33.5689045936396, Blast_Score=135, Evalue=2e-33,
Organism=Escherichia coli, GI1788758, Length=232, Percent_Identity=34.4827586206897, Blast_Score=125, Evalue=3e-30,
Organism=Caenorhabditis elegans, GI17507759, Length=254, Percent_Identity=33.4645669291339, Blast_Score=109, Evalue=2e-24,
Organism=Caenorhabditis elegans, GI17507757, Length=264, Percent_Identity=32.1969696969697, Blast_Score=101, Evalue=4e-22,
Organism=Saccharomyces cerevisiae, GI6320806, Length=284, Percent_Identity=30.6338028169014, Blast_Score=105, Evalue=8e-24,
Organism=Saccharomyces cerevisiae, GI6324354, Length=247, Percent_Identity=34.0080971659919, Blast_Score=92, Evalue=1e-19,
Organism=Drosophila melanogaster, GI45553007, Length=294, Percent_Identity=29.5918367346939, Blast_Score=110, Evalue=9e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013749
- InterPro:   IPR004625 [H]

Pfam domain/function: PF08543 Phos_pyr_kin [H]

EC number: =2.7.1.35 [H]

Molecular weight: Translated: 29625; Mature: 29494

Theoretical pI: Translated: 7.11; Mature: 7.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPVLSIQSHVCAGHVGNAAAVPALQALGREPIALNTVAFAHHPGRGRPAGRVTPAEELAT
CCCCCCCHHHHHCCCCCHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHH
LLAALRPLDEFRRCKALLSGYLGRPDTAEVVAEAIDSLRAITPRALVVCDPVLGDTDKGL
HHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCE
YVDPALPGRVGALLVPRADILMPNAFELAILSGRAPPLADLGAILEAARALVGQGPRAVI
EECCCCCCCCCEEEECCHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEE
VTSLPFEDGGIGDLLVTATASWLARGPLIAGVAGIKGTGDLLSALLVGHLLRDAGDPWHP
EEECCCCCCCCCHHHHHHHHHHHHCCCHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCH
QALPRALALAVAGVRLVLGATAGSGRGEMALVRCLPALASPLDPVPIAPLA
HHHHHHHHHHHHHHHHHEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
PVLSIQSHVCAGHVGNAAAVPALQALGREPIALNTVAFAHHPGRGRPAGRVTPAEELAT
CCCCCCHHHHHCCCCCHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHH
LLAALRPLDEFRRCKALLSGYLGRPDTAEVVAEAIDSLRAITPRALVVCDPVLGDTDKGL
HHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCE
YVDPALPGRVGALLVPRADILMPNAFELAILSGRAPPLADLGAILEAARALVGQGPRAVI
EECCCCCCCCCEEEECCHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEE
VTSLPFEDGGIGDLLVTATASWLARGPLIAGVAGIKGTGDLLSALLVGHLLRDAGDPWHP
EEECCCCCCCCCHHHHHHHHHHHHCCCHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCH
QALPRALALAVAGVRLVLGATAGSGRGEMALVRCLPALASPLDPVPIAPLA
HHHHHHHHHHHHHHHHHEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA