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The map label for this gene is yoaB [C]

Identifier: 83592510

GI number: 83592510

Start: 1390698

End: 1391042

Strand: Direct

Name: yoaB [C]

Synonym: Rru_A1174

Alternate gene names: 83592510

Gene position: 1390698-1391042 (Clockwise)

Preceding gene: 83592507

Following gene: 83592512

Centisome position: 31.95

GC content: 65.22

Gene sequence:

>345_bases
ATGTCGATCCGCCGCATCGAGTCCAACGCCCGCATGAGTCAGGCCGTTGTCCATGGCGACACCGTTTATCTGGCCGGGCA
GGTTGGCACGCCGGGAGACGGCGTCGCCGAGCAGACGGCGACGATTCTCGCCAACATCGACCGCCTGCTGGCCGAGGTCG
GCAGTCATAAGTCGAAGATCCTGTCGGCGACGATCTGGTTGGCCGATATGACCGATTTCTCGGCGATGAACGCCGTGTGG
GATCCCTGGGTCGATCCGGCCAATCCCCCGGCCCGGGCCTGCGGCGAAGTGAAGCTGGCCGCCCCCGGTTATCGGGTGGA
AGTGATCATCGTCGCCGCCCGCTAA

Upstream 100 bases:

>100_bases
TGGCCAAAGGCAAAAGGGCGGGGGAGGGGCGCGGCGGGTTTGCGCTTGCCGGGGGGCGTGGCCTACACTCCGCGTCCATA
TCCCCACGAGGAGGTCTTTC

Downstream 100 bases:

>100_bases
TCATGGAAACGGCCGGACCGCTTGCGCGATCCGGCCGTTTTTCGTCACGGCGACTCCGCCGCCCGGCGGAGGACGCCGTA
AGCGAAAGGCACCAATCTCC

Product: endoribonuclease L-PSP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 114; Mature: 113

Protein sequence:

>114_residues
MSIRRIESNARMSQAVVHGDTVYLAGQVGTPGDGVAEQTATILANIDRLLAEVGSHKSKILSATIWLADMTDFSAMNAVW
DPWVDPANPPARACGEVKLAAPGYRVEVIIVAAR

Sequences:

>Translated_114_residues
MSIRRIESNARMSQAVVHGDTVYLAGQVGTPGDGVAEQTATILANIDRLLAEVGSHKSKILSATIWLADMTDFSAMNAVW
DPWVDPANPPARACGEVKLAAPGYRVEVIIVAAR
>Mature_113_residues
SIRRIESNARMSQAVVHGDTVYLAGQVGTPGDGVAEQTATILANIDRLLAEVGSHKSKILSATIWLADMTDFSAMNAVWD
PWVDPANPPARACGEVKLAAPGYRVEVIIVAAR

Specific function: Unknown

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Escherichia coli, GI87081979, Length=113, Percent_Identity=46.9026548672566, Blast_Score=100, Evalue=3e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 12144; Mature: 12013

Theoretical pI: Translated: 5.66; Mature: 5.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIRRIESNARMSQAVVHGDTVYLAGQVGTPGDGVAEQTATILANIDRLLAEVGSHKSKI
CCCCCCCCCCHHHHHEEECCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHH
LSATIWLADMTDFSAMNAVWDPWVDPANPPARACGEVKLAAPGYRVEVIIVAAR
EEEEEEEECCCCCHHHHCCCCCCCCCCCCCCCCCCCEEEECCCCEEEEEEEECC
>Mature Secondary Structure 
SIRRIESNARMSQAVVHGDTVYLAGQVGTPGDGVAEQTATILANIDRLLAEVGSHKSKI
CCCCCCCCCHHHHHEEECCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHH
LSATIWLADMTDFSAMNAVWDPWVDPANPPARACGEVKLAAPGYRVEVIIVAAR
EEEEEEEECCCCCHHHHCCCCCCCCCCCCCCCCCCCEEEECCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]