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The map label for this gene is ybaQ [C]

Identifier: 83592401

GI number: 83592401

Start: 1256071

End: 1256376

Strand: Direct

Name: ybaQ [C]

Synonym: Rru_A1065

Alternate gene names: 83592401

Gene position: 1256071-1256376 (Clockwise)

Preceding gene: 83592400

Following gene: 83592402

Centisome position: 28.86

GC content: 63.07

Gene sequence:

>306_bases
ATGATGACCAAGCGCAAGCCGGTGACGGTCGGGGAAATCCTGGTGGAAGAGTTCATGGGGCCGCTTGGCCTGACGCAGGC
GGCGCTGGCCGAGGCGATGGGCGTTCAGCGCAAACATGTCAACGAGCTGTGCAATAATCGACGCACCGTCACGGCGGCGA
CCGCGCTTATTCTGGCCCGCGTATTTGGCAATAGCCCGGACTTCTGGCTGAACGCGCAGCGGCGGAACGACCTGTGGGAG
GTTCTGCACAGTCCCAAGGACGTGGAGCGTATCGAGCGCGCCAAACCCTTGGCGCTGCGGGCTTAA

Upstream 100 bases:

>100_bases
TCAACAAGCAATGGCGGCTGATCTTTCGATGGGACGGCGGTCGCGGCGAAGCGTCGGGCATTTATCTCGACGACCACGGT
TATCGGTGAGGTGACAGATG

Downstream 100 bases:

>100_bases
CCGGCTTTTTCATCGAACCGCGGCGCCTTTGGCAAGCCCTTGGCCCATCCCTGGATTCGTAAAAACTACTTTCTCTACCT
ATTAGGTCGTGTTAAAGACG

Product: plasmid maintenance system antidote protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 101; Mature: 101

Protein sequence:

>101_residues
MMTKRKPVTVGEILVEEFMGPLGLTQAALAEAMGVQRKHVNELCNNRRTVTAATALILARVFGNSPDFWLNAQRRNDLWE
VLHSPKDVERIERAKPLALRA

Sequences:

>Translated_101_residues
MMTKRKPVTVGEILVEEFMGPLGLTQAALAEAMGVQRKHVNELCNNRRTVTAATALILARVFGNSPDFWLNAQRRNDLWE
VLHSPKDVERIERAKPLALRA
>Mature_101_residues
MMTKRKPVTVGEILVEEFMGPLGLTQAALAEAMGVQRKHVNELCNNRRTVTAATALILARVFGNSPDFWLNAQRRNDLWE
VLHSPKDVERIERAKPLALRA

Specific function: Unknown

COG id: COG3093

COG function: function code R; Plasmid maintenance system antidote protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081745, Length=94, Percent_Identity=43.6170212765958, Blast_Score=78, Evalue=1e-16,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013430
- InterPro:   IPR001387
- InterPro:   IPR010982 [H]

Pfam domain/function: PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 11378; Mature: 11378

Theoretical pI: Translated: 10.59; Mature: 10.59

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMTKRKPVTVGEILVEEFMGPLGLTQAALAEAMGVQRKHVNELCNNRRTVTAATALILAR
CCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
VFGNSPDFWLNAQRRNDLWEVLHSPKDVERIERAKPLALRA
HHCCCCCCEEECHHHHHHHHHHCCCHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MMTKRKPVTVGEILVEEFMGPLGLTQAALAEAMGVQRKHVNELCNNRRTVTAATALILAR
CCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
VFGNSPDFWLNAQRRNDLWEVLHSPKDVERIERAKPLALRA
HHCCCCCCEEECHHHHHHHHHHCCCHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]