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The map label for this gene is ycaN [C]

Identifier: 83592399

GI number: 83592399

Start: 1255244

End: 1255588

Strand: Direct

Name: ycaN [C]

Synonym: Rru_A1063

Alternate gene names: 83592399

Gene position: 1255244-1255588 (Clockwise)

Preceding gene: 83592398

Following gene: 83592400

Centisome position: 28.84

GC content: 68.12

Gene sequence:

>345_bases
GTGATCGCCTTTCGCTTTCCCGAGGGCGTCTATCGCTGGGAGCTGGAAAAGGCCGGGCGGCGCGTCACCGTCGATCCGAC
CGGTCCGCTGTGCGTCAACGACCATACGCTGCTGGAAGCGGCGAGCGCCGGTGCCGGGCTGGCCTGCGTGCTGCGGCCGC
GCGCCGCCGACTGGCTGGCCGATGGGCGGTTGCGGCCCGTTCTCGAAGACTGGTGCCCCGCCTTCCCGGGCCTGCGCCTT
TACTACCCCAGCCGACGCATGACCGCCGCCCTGCGCGCCTTCATCGAAACCCTGCGCCTTGATCAAACCACGTTCAATGA
GCCCCCTTTAGCGCGGAAACTTTGA

Upstream 100 bases:

>100_bases
ACCCGCAACACCAAGGACTTTCCGCCCGACGATCCGGGGGTACGCGAACCCTACGCCTTGTAGCAATCACCCCCAGGCCG
GACTTCTGGTTGAACGTGCA

Downstream 100 bases:

>100_bases
TCCAAAGCCAATAGGGTGGGGTGGCGATGGCGCGGAAGGGCGGGAACCGGTTTTTAGCCCGTCCCAATTGGGGAACCCGA
TGATCCTTCGCCGGCTTTGA

Product: putative transcription regulator protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 114; Mature: 114

Protein sequence:

>114_residues
MIAFRFPEGVYRWELEKAGRRVTVDPTGPLCVNDHTLLEAASAGAGLACVLRPRAADWLADGRLRPVLEDWCPAFPGLRL
YYPSRRMTAALRAFIETLRLDQTTFNEPPLARKL

Sequences:

>Translated_114_residues
MIAFRFPEGVYRWELEKAGRRVTVDPTGPLCVNDHTLLEAASAGAGLACVLRPRAADWLADGRLRPVLEDWCPAFPGLRL
YYPSRRMTAALRAFIETLRLDQTTFNEPPLARKL
>Mature_114_residues
MIAFRFPEGVYRWELEKAGRRVTVDPTGPLCVNDHTLLEAASAGAGLACVLRPRAADWLADGRLRPVLEDWCPAFPGLRL
YYPSRRMTAALRAFIETLRLDQTTFNEPPLARKL

Specific function: May have a role in the regulation of oprD expression [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787128, Length=104, Percent_Identity=34.6153846153846, Blast_Score=66, Evalue=5e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 12855; Mature: 12855

Theoretical pI: Translated: 8.89; Mature: 8.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIAFRFPEGVYRWELEKAGRRVTVDPTGPLCVNDHTLLEAASAGAGLACVLRPRAADWLA
CEEEECCCCCEEEEHHHCCCEEEECCCCCEEECCHHHHHHHCCCCCEEEEECCCCCCHHC
DGRLRPVLEDWCPAFPGLRLYYPSRRMTAALRAFIETLRLDQTTFNEPPLARKL
CCCCCCHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure
MIAFRFPEGVYRWELEKAGRRVTVDPTGPLCVNDHTLLEAASAGAGLACVLRPRAADWLA
CEEEECCCCCEEEEHHHCCCEEEECCCCCEEECCHHHHHHHCCCCCEEEEECCCCCCHHC
DGRLRPVLEDWCPAFPGLRLYYPSRRMTAALRAFIETLRLDQTTFNEPPLARKL
CCCCCCHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10984043; 1427017 [H]