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The map label for this gene is virS [H]

Identifier: 83592365

GI number: 83592365

Start: 1217884

End: 1218939

Strand: Reverse

Name: virS [H]

Synonym: Rru_A1029

Alternate gene names: 83592365

Gene position: 1218939-1217884 (Counterclockwise)

Preceding gene: 83592366

Following gene: 83592362

Centisome position: 28.0

GC content: 67.33

Gene sequence:

>1056_bases
ATGTCTCATAGCCTGGACTCACGGCACATGTGCCAGAATCGCCTATCCTTTGGGCAACGCAATATCCTGGCGGCGGCGGC
TTGCGGCATCGCCCAGGGCATTCGCGCCCAGGGGGCCGATGCCGACGCGGTGTTCATCAAGGCGGGGGTGCGCGAAAGCG
ATCTGGGCGATCCCCGGCTGTCGCTCGACCTGGGATCTTATGTGGCGATGTTCGAACTGGCCGCCGTCGCCACCGGCAAC
GACAATTTCGGCCTATGGTTCGGTCAGGGCTTTCTGCCGCCGATGCTCGGGCTGATTGGCGAGATCGCCCTGTGCTCGCC
GACCCTGGGCAGCGCCCTTGATAACCTCGCCACGCTTTTTCCCTTCCATCAGCAGGCCACCCAAACCCGCCTGCGCCGCG
ACGGAACCCTGCTCCGCTTGGAATACCGCATCCTTGATGGCCGGATCATCGACCGCCGCCAGGATGCCGAACTGACCATG
GGCATGTTCGCCAATGTGCTGCGCGCCGCATTGGGGCCGGGCTGGCGTCCCGAGGAGGTGCATTTCGAGCACCCCCGGCC
CGAGGGATGGGCCGCCCACGGCCGGGCCTTCGACGCCGATATCCATTTCGGCCAACCGACCAACGCCCTGGTCTTTCGCG
ACCGCGACCGCGAGCGCCCGATGCCCGCCGGCGACCTCGGCCGCCTGACCCGCCTGCGCGACGAGTTACTCAGCGTCAGC
GGCGGCACCGGCCGGGTTCCCTTCGTCGAACAGGTGCGCGGCGAAACCCGCCGCCTGCTGACCGAAGGCGCCCCCCATAT
CGAGGATGTGGCCGAGGCCCTGGGTCTGGCGCGCTGGACCCTGCAGCGCCGGCTGGCCGACGAGGGGTTGAGCTTTTCCG
ATGTGGTCGACGACCTGCGCCGCACCTTGGCCAAACGCTATGTCAGCCAGCCCCATGTGCCCTTGGCCGATATCGCCCAA
TTCCTCGGCTATTCCGAACCCAGCGCCTTCTCCCGCGCCTTCGTCCGCTGGTTCGGCATCTCCGCCCAACAGATGCGCCG
CGCCGAAGCGGCTTAG

Upstream 100 bases:

>100_bases
CCGGGATCATCCTTGGCCCGGGCTTTGCAAAGATATCCCCGACCGTTTCGACGGCCCCGCGACAGGCGCGGGGCCGTTGG
CCTTTATCGGCGAGGCCCCC

Downstream 100 bases:

>100_bases
CGCCCGCTGGTGGGATAAAGGGTGTGGTGCCAATAGGCGAAGCCCATCAGGGCGACGCCGGCGGCGACATGGGCCTTGCG
CGCGCCATGGCCGTGCAGGG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 351; Mature: 350

Protein sequence:

>351_residues
MSHSLDSRHMCQNRLSFGQRNILAAAACGIAQGIRAQGADADAVFIKAGVRESDLGDPRLSLDLGSYVAMFELAAVATGN
DNFGLWFGQGFLPPMLGLIGEIALCSPTLGSALDNLATLFPFHQQATQTRLRRDGTLLRLEYRILDGRIIDRRQDAELTM
GMFANVLRAALGPGWRPEEVHFEHPRPEGWAAHGRAFDADIHFGQPTNALVFRDRDRERPMPAGDLGRLTRLRDELLSVS
GGTGRVPFVEQVRGETRRLLTEGAPHIEDVAEALGLARWTLQRRLADEGLSFSDVVDDLRRTLAKRYVSQPHVPLADIAQ
FLGYSEPSAFSRAFVRWFGISAQQMRRAEAA

Sequences:

>Translated_351_residues
MSHSLDSRHMCQNRLSFGQRNILAAAACGIAQGIRAQGADADAVFIKAGVRESDLGDPRLSLDLGSYVAMFELAAVATGN
DNFGLWFGQGFLPPMLGLIGEIALCSPTLGSALDNLATLFPFHQQATQTRLRRDGTLLRLEYRILDGRIIDRRQDAELTM
GMFANVLRAALGPGWRPEEVHFEHPRPEGWAAHGRAFDADIHFGQPTNALVFRDRDRERPMPAGDLGRLTRLRDELLSVS
GGTGRVPFVEQVRGETRRLLTEGAPHIEDVAEALGLARWTLQRRLADEGLSFSDVVDDLRRTLAKRYVSQPHVPLADIAQ
FLGYSEPSAFSRAFVRWFGISAQQMRRAEAA
>Mature_350_residues
SHSLDSRHMCQNRLSFGQRNILAAAACGIAQGIRAQGADADAVFIKAGVRESDLGDPRLSLDLGSYVAMFELAAVATGND
NFGLWFGQGFLPPMLGLIGEIALCSPTLGSALDNLATLFPFHQQATQTRLRRDGTLLRLEYRILDGRIIDRRQDAELTMG
MFANVLRAALGPGWRPEEVHFEHPRPEGWAAHGRAFDADIHFGQPTNALVFRDRDRERPMPAGDLGRLTRLRDELLSVSG
GTGRVPFVEQVRGETRRLLTEGAPHIEDVAEALGLARWTLQRRLADEGLSFSDVVDDLRRTLAKRYVSQPHVPLADIAQF
LGYSEPSAFSRAFVRWFGISAQQMRRAEAA

Specific function: May have a role in the regulation of proteins necessary for virulence [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 38815; Mature: 38683

Theoretical pI: Translated: 7.02; Mature: 7.02

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSHSLDSRHMCQNRLSFGQRNILAAAACGIAQGIRAQGADADAVFIKAGVRESDLGDPRL
CCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCEE
SLDLGSYVAMFELAAVATGNDNFGLWFGQGFLPPMLGLIGEIALCSPTLGSALDNLATLF
EEHHHHHHHHHHHHHHEECCCCCEEEECCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
PFHQQATQTRLRRDGTLLRLEYRILDGRIIDRRQDAELTMGMFANVLRAALGPGWRPEEV
HHHHHHHHHHHHCCCCEEEEEEEEECCEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCC
HFEHPRPEGWAAHGRAFDADIHFGQPTNALVFRDRDRERPMPAGDLGRLTRLRDELLSVS
CCCCCCCCCCCCCCCEEECCEECCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCC
GGTGRVPFVEQVRGETRRLLTEGAPHIEDVAEALGLARWTLQRRLADEGLSFSDVVDDLR
CCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
RTLAKRYVSQPHVPLADIAQFLGYSEPSAFSRAFVRWFGISAQQMRRAEAA
HHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHCCC
>Mature Secondary Structure 
SHSLDSRHMCQNRLSFGQRNILAAAACGIAQGIRAQGADADAVFIKAGVRESDLGDPRL
CCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCEE
SLDLGSYVAMFELAAVATGNDNFGLWFGQGFLPPMLGLIGEIALCSPTLGSALDNLATLF
EEHHHHHHHHHHHHHHEECCCCCEEEECCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
PFHQQATQTRLRRDGTLLRLEYRILDGRIIDRRQDAELTMGMFANVLRAALGPGWRPEEV
HHHHHHHHHHHHCCCCEEEEEEEEECCEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCC
HFEHPRPEGWAAHGRAFDADIHFGQPTNALVFRDRDRERPMPAGDLGRLTRLRDELLSVS
CCCCCCCCCCCCCCCEEECCEECCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCC
GGTGRVPFVEQVRGETRRLLTEGAPHIEDVAEALGLARWTLQRRLADEGLSFSDVVDDLR
CCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
RTLAKRYVSQPHVPLADIAQFLGYSEPSAFSRAFVRWFGISAQQMRRAEAA
HHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8472958; 9634230; 12218036 [H]