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The map label for this gene is yhdY [H]

Identifier: 83592338

GI number: 83592338

Start: 1188229

End: 1189326

Strand: Reverse

Name: yhdY [H]

Synonym: Rru_A1002

Alternate gene names: 83592338

Gene position: 1189326-1188229 (Counterclockwise)

Preceding gene: 83592339

Following gene: 83592337

Centisome position: 27.32

GC content: 64.75

Gene sequence:

>1098_bases
ATGGCTGTCTTCGCCCCCAAGGCGGCCCTGCCGCCGCCGGTCCAGACCACCGGTCCGATCGCCTGGATCCGCCAGAATCT
GCTGTCGTCGCCCTTCAACATCGCCCTGACCGCGCTGGCGCTGTGGATCGTCGTGTCGGGCGGATCTTCCCTCGTCACAT
GGGCCATCCTCGACGCCACCTTCATCGGCGAGGGCCAGGATGCCTGTTCCAACGGCGGCGCCTGTTGGGCCTTCATCATC
AATCGCCTGGATTTCTTCACCTACGGCTTCTATCCGGCGGCCGAGCGCTGGCGCGTCAACCTTGGCTTCCTGATGCTGGC
CGTCGCCCTGGTGCCGCAATTCATTACCGGCTTCTCCGGACGCCGGGCGCTGGGCCTGTTTGGCCTGACCGCCCTGCCGG
TGATCACCGGCGTGCTGCTGGTCGGCGGCGTTTTCGGCCTAAGGCCGGTCGACACCTCGCAGTGGGGCGGGTTGATGCTG
ACCCTGGTGCTCGCCTATGTCGGCATCGTCGCCGCCTTGCCCTTGGGCATGGTTCTGGCCTTGGGCCGCCGGTCGAGCAT
GCCGGTGGTGCGCATCTCCTGCACCACCTTCATCGAGCTGTGGCGCGGCGTGCCGCTGATTTCGGTGCTGTTCATGGCCT
CGGTGATGCTGCCGCTGTTCCTGCCCACCGGCGTTACCTTTGACAAGCTGCTGCGCGCCCTGATCGGTATCACGCTGTTT
CAGTCGGCCTATATGGCCGAAGTCATCCGCGGCGGGCTGCAGGCGATCCCGCGCGGTCAGTTCGAGGCGGCCAGCGCCCT
TGGCCTGGGCTTCTGGCGCTCGACCGGGCTGATCATCCTGCCCCAGGCCCTGAAGCTGGTGATCCCCGGCGTCGTCAACA
CCTTCATCGCCCTGTTCAAGGATACGACCCTGGTGCTGATCATCGGTCTGCTCGATATCCTGGGAACGGTTCAATCGGCC
ATTGTCGATCCCGCCTGGAGCCGGGTCGCGGTGGAAGGCTACATCTTCGCCGGCTTCTGCTTCTGGATCTTCTGCTTTGG
CATGTCGCGCTACAGTCAGGCCCTGGAAAGCAAGCTGCATACCGGACACAGGAAATAA

Upstream 100 bases:

>100_bases
CGTCGGCATGACCATGGCGGTCTATTTGCTGATCAGCCTGGTCGTGAGCGGATTGATGAATTGGTATAACCGGGCCGTCG
CCCTGAAGGAGCGCTGAGCC

Downstream 100 bases:

>100_bases
CCATGAGCGACTTCAGCAACGACCAGACCGGCCGCGCCGCTCTTCCCCGGCTGGACCACCAGATCGGCGACGATGTGGTC
ATCCGCATCGAGCAGATGAA

Product: amino acid ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 365; Mature: 364

Protein sequence:

>365_residues
MAVFAPKAALPPPVQTTGPIAWIRQNLLSSPFNIALTALALWIVVSGGSSLVTWAILDATFIGEGQDACSNGGACWAFII
NRLDFFTYGFYPAAERWRVNLGFLMLAVALVPQFITGFSGRRALGLFGLTALPVITGVLLVGGVFGLRPVDTSQWGGLML
TLVLAYVGIVAALPLGMVLALGRRSSMPVVRISCTTFIELWRGVPLISVLFMASVMLPLFLPTGVTFDKLLRALIGITLF
QSAYMAEVIRGGLQAIPRGQFEAASALGLGFWRSTGLIILPQALKLVIPGVVNTFIALFKDTTLVLIIGLLDILGTVQSA
IVDPAWSRVAVEGYIFAGFCFWIFCFGMSRYSQALESKLHTGHRK

Sequences:

>Translated_365_residues
MAVFAPKAALPPPVQTTGPIAWIRQNLLSSPFNIALTALALWIVVSGGSSLVTWAILDATFIGEGQDACSNGGACWAFII
NRLDFFTYGFYPAAERWRVNLGFLMLAVALVPQFITGFSGRRALGLFGLTALPVITGVLLVGGVFGLRPVDTSQWGGLML
TLVLAYVGIVAALPLGMVLALGRRSSMPVVRISCTTFIELWRGVPLISVLFMASVMLPLFLPTGVTFDKLLRALIGITLF
QSAYMAEVIRGGLQAIPRGQFEAASALGLGFWRSTGLIILPQALKLVIPGVVNTFIALFKDTTLVLIIGLLDILGTVQSA
IVDPAWSRVAVEGYIFAGFCFWIFCFGMSRYSQALESKLHTGHRK
>Mature_364_residues
AVFAPKAALPPPVQTTGPIAWIRQNLLSSPFNIALTALALWIVVSGGSSLVTWAILDATFIGEGQDACSNGGACWAFIIN
RLDFFTYGFYPAAERWRVNLGFLMLAVALVPQFITGFSGRRALGLFGLTALPVITGVLLVGGVFGLRPVDTSQWGGLMLT
LVLAYVGIVAALPLGMVLALGRRSSMPVVRISCTTFIELWRGVPLISVLFMASVMLPLFLPTGVTFDKLLRALIGITLFQ
SAYMAEVIRGGLQAIPRGQFEAASALGLGFWRSTGLIILPQALKLVIPGVVNTFIALFKDTTLVLIIGLLDILGTVQSAI
VDPAWSRVAVEGYIFAGFCFWIFCFGMSRYSQALESKLHTGHRK

Specific function: Probably part of the binding-protein-dependent transport system ydhWXYZ for an amino acid; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI87082239, Length=354, Percent_Identity=53.954802259887, Blast_Score=386, Evalue=1e-108,
Organism=Escherichia coli, GI1788226, Length=205, Percent_Identity=33.6585365853659, Blast_Score=108, Evalue=5e-25,
Organism=Escherichia coli, GI1786873, Length=199, Percent_Identity=34.1708542713568, Blast_Score=107, Evalue=9e-25,
Organism=Escherichia coli, GI1786874, Length=169, Percent_Identity=26.6272189349112, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1787030, Length=180, Percent_Identity=30, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1788645, Length=184, Percent_Identity=29.3478260869565, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1788646, Length=172, Percent_Identity=27.906976744186, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI48994930, Length=89, Percent_Identity=33.7078651685393, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1787086, Length=170, Percent_Identity=30, Blast_Score=65, Evalue=9e-12,
Organism=Escherichia coli, GI1787087, Length=185, Percent_Identity=29.1891891891892, Blast_Score=65, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 39261; Mature: 39130

Theoretical pI: Translated: 9.94; Mature: 9.94

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVFAPKAALPPPVQTTGPIAWIRQNLLSSPFNIALTALALWIVVSGGSSLVTWAILDAT
CCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
FIGEGQDACSNGGACWAFIINRLDFFTYGFYPAAERWRVNLGFLMLAVALVPQFITGFSG
HCCCCCHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
RRALGLFGLTALPVITGVLLVGGVFGLRPVDTSQWGGLMLTLVLAYVGIVAALPLGMVLA
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGRRSSMPVVRISCTTFIELWRGVPLISVLFMASVMLPLFLPTGVTFDKLLRALIGITLF
HCCCCCCCEEEEHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
QSAYMAEVIRGGLQAIPRGQFEAASALGLGFWRSTGLIILPQALKLVIPGVVNTFIALFK
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHH
DTTLVLIIGLLDILGTVQSAIVDPAWSRVAVEGYIFAGFCFWIFCFGMSRYSQALESKLH
CHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TGHRK
CCCCC
>Mature Secondary Structure 
AVFAPKAALPPPVQTTGPIAWIRQNLLSSPFNIALTALALWIVVSGGSSLVTWAILDAT
CCCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
FIGEGQDACSNGGACWAFIINRLDFFTYGFYPAAERWRVNLGFLMLAVALVPQFITGFSG
HCCCCCHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
RRALGLFGLTALPVITGVLLVGGVFGLRPVDTSQWGGLMLTLVLAYVGIVAALPLGMVLA
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGRRSSMPVVRISCTTFIELWRGVPLISVLFMASVMLPLFLPTGVTFDKLLRALIGITLF
HCCCCCCCEEEEHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
QSAYMAEVIRGGLQAIPRGQFEAASALGLGFWRSTGLIILPQALKLVIPGVVNTFIALFK
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHH
DTTLVLIIGLLDILGTVQSAIVDPAWSRVAVEGYIFAGFCFWIFCFGMSRYSQALESKLH
CHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TGHRK
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]