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The map label for this gene is pocR [H]

Identifier: 83592255

GI number: 83592255

Start: 1093227

End: 1094297

Strand: Direct

Name: pocR [H]

Synonym: Rru_A0919

Alternate gene names: 83592255

Gene position: 1093227-1094297 (Clockwise)

Preceding gene: 83592254

Following gene: 83592256

Centisome position: 25.12

GC content: 59.57

Gene sequence:

>1071_bases
ATGTACGGCATTGTCATTGTTGAAGACGAGGAACTCGAGCGCCAGGCGCTGCGCACCATTCTAACCGAGAATATCGACGG
CATCCGCATTCTGGGCGAAGCGCGCACCGGCACCGAGGCGGTGGCGCTGATCGACAGCTGCGAGATCGATCTGATGCTGG
TCGATATCAATATTCCCAATCTGAACGGCCTGGAGGTCATCCGCCATCTGCGCGACCGCCATGCCGATACCAAGGTCATC
ATCACCACCGCTTACGATTACTTTGAAACGACGCGGACGGCGATCCAGCTCAAGGTCGATGAATATCTGCTCAAGCCGAT
CCGCACCCAGGCGCTGGTCACCACCATCCAATCGTGCATCGGGCAACTTGGCGCCGGGCGGCAGTGCCGGGAACTGGTGG
GGCGCATCGCCGATCTGGTCGAACAGGATGGCTATCAGGAAGGCGTCACCCTGGTGCGCCGCCATATCGAATGGATCTGC
ACCCAGCGCGGTCATGTCCCCCGCGATCTGATTTTGGATTTCGCCGGGGCGCTGGTGGCGCTGGCCCGGGACAAGGGGCT
GCGCCTGCCCGACGCCCTGACCCAGCAGATCGGCCAGTTGCGAACCATGCCACTGGACGCCCAGACCGGCTATCAGGCGC
TTGGCACCTTTTTGGGGGTCGTCGACCTGCTGTTCGATGTGACCGGCGAGCGTTTTGGCTATTCGTCCAATACGGTGAAG
AAGGTTCTGAATTATATCGAACGCAATCTCACTAAAAGGATCACCCTGGAAGACGCGGCGGAGTATGCCAATATCAGCCC
GTCTTATCTAAGCCGGATGTTCAAGAAAACGCTGAACGTCAACTTCATTTCCTATCTGACAACCCGGCGGATCGAGCTTG
CCAAGGAAACCCTGATCGGCACCGAGCGCCCGATCACGGCGATTTCCCAGGAATTGTCCTATAGCGACGTCAATTACTTC
TGCAAATCCTTCAAAAAGGAGGTCGGCGTTTCGCCGACCGAATACCGCCGGCAATCCCGGCTGGCCCAGGGCGCTCCGCC
GCCCCGCGAAGCGGCCCTCGCCACGGGGTAG

Upstream 100 bases:

>100_bases
GCCCAGCCACTCCGGGGGGGCGGCACGGTCGTCGAGATGCGCTTTCCCCTGGACTTCGATCCCTGCGGCACCTGAACGCC
TGCGCCGAGGAGAGACGGCT

Downstream 100 bases:

>100_bases
GGCGCAGGCCTTTGGACACCGGGTTGAAATCACCGCGTTAAGGGACTCCCCTTAACGCGGTTTTATTTTGCGGCAAAGGC
TGTCAATAAAAACCACGGCG

Product: two component AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 356; Mature: 356

Protein sequence:

>356_residues
MYGIVIVEDEELERQALRTILTENIDGIRILGEARTGTEAVALIDSCEIDLMLVDINIPNLNGLEVIRHLRDRHADTKVI
ITTAYDYFETTRTAIQLKVDEYLLKPIRTQALVTTIQSCIGQLGAGRQCRELVGRIADLVEQDGYQEGVTLVRRHIEWIC
TQRGHVPRDLILDFAGALVALARDKGLRLPDALTQQIGQLRTMPLDAQTGYQALGTFLGVVDLLFDVTGERFGYSSNTVK
KVLNYIERNLTKRITLEDAAEYANISPSYLSRMFKKTLNVNFISYLTTRRIELAKETLIGTERPITAISQELSYSDVNYF
CKSFKKEVGVSPTEYRRQSRLAQGAPPPREAALATG

Sequences:

>Translated_356_residues
MYGIVIVEDEELERQALRTILTENIDGIRILGEARTGTEAVALIDSCEIDLMLVDINIPNLNGLEVIRHLRDRHADTKVI
ITTAYDYFETTRTAIQLKVDEYLLKPIRTQALVTTIQSCIGQLGAGRQCRELVGRIADLVEQDGYQEGVTLVRRHIEWIC
TQRGHVPRDLILDFAGALVALARDKGLRLPDALTQQIGQLRTMPLDAQTGYQALGTFLGVVDLLFDVTGERFGYSSNTVK
KVLNYIERNLTKRITLEDAAEYANISPSYLSRMFKKTLNVNFISYLTTRRIELAKETLIGTERPITAISQELSYSDVNYF
CKSFKKEVGVSPTEYRRQSRLAQGAPPPREAALATG
>Mature_356_residues
MYGIVIVEDEELERQALRTILTENIDGIRILGEARTGTEAVALIDSCEIDLMLVDINIPNLNGLEVIRHLRDRHADTKVI
ITTAYDYFETTRTAIQLKVDEYLLKPIRTQALVTTIQSCIGQLGAGRQCRELVGRIADLVEQDGYQEGVTLVRRHIEWIC
TQRGHVPRDLILDFAGALVALARDKGLRLPDALTQQIGQLRTMPLDAQTGYQALGTFLGVVDLLFDVTGERFGYSSNTVK
KVLNYIERNLTKRITLEDAAEYANISPSYLSRMFKKTLNVNFISYLTTRRIELAKETLIGTERPITAISQELSYSDVNYF
CKSFKKEVGVSPTEYRRQSRLAQGAPPPREAALATG

Specific function: Positive regulatory protein of pdu and cob operons [H]

COG id: COG4753

COG function: function code T; Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790391, Length=104, Percent_Identity=36.5384615384615, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1788222, Length=118, Percent_Identity=33.8983050847458, Blast_Score=71, Evalue=9e-14,
Organism=Escherichia coli, GI1787987, Length=102, Percent_Identity=36.2745098039216, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1788725, Length=96, Percent_Identity=29.1666666666667, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1786251, Length=101, Percent_Identity=32.6732673267327, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1787487, Length=105, Percent_Identity=33.3333333333333, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI87082052, Length=116, Percent_Identity=33.6206896551724, Blast_Score=62, Evalue=7e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR018771 [H]

Pfam domain/function: PF10114 Hist_Kin_Sens; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 39984; Mature: 39984

Theoretical pI: Translated: 6.18; Mature: 6.18

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYGIVIVEDEELERQALRTILTENIDGIRILGEARTGTEAVALIDSCEIDLMLVDINIPN
CEEEEEEECHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHEEECCCEEEEEEEEECCC
LNGLEVIRHLRDRHADTKVIITTAYDYFETTRTAIQLKVDEYLLKPIRTQALVTTIQSCI
CCHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHEEEEHHHHHHHHHHHHHHHHHHHHHH
GQLGAGRQCRELVGRIADLVEQDGYQEGVTLVRRHIEWICTQRGHVPRDLILDFAGALVA
HHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
LARDKGLRLPDALTQQIGQLRTMPLDAQTGYQALGTFLGVVDLLFDVTGERFGYSSNTVK
HHHCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH
KVLNYIERNLTKRITLEDAAEYANISPSYLSRMFKKTLNVNFISYLTTRRIELAKETLIG
HHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCC
TERPITAISQELSYSDVNYFCKSFKKEVGVSPTEYRRQSRLAQGAPPPREAALATG
CCCCHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MYGIVIVEDEELERQALRTILTENIDGIRILGEARTGTEAVALIDSCEIDLMLVDINIPN
CEEEEEEECHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHEEECCCEEEEEEEEECCC
LNGLEVIRHLRDRHADTKVIITTAYDYFETTRTAIQLKVDEYLLKPIRTQALVTTIQSCI
CCHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHEEEEHHHHHHHHHHHHHHHHHHHHHH
GQLGAGRQCRELVGRIADLVEQDGYQEGVTLVRRHIEWICTQRGHVPRDLILDFAGALVA
HHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
LARDKGLRLPDALTQQIGQLRTMPLDAQTGYQALGTFLGVVDLLFDVTGERFGYSSNTVK
HHHCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH
KVLNYIERNLTKRITLEDAAEYANISPSYLSRMFKKTLNVNFISYLTTRRIELAKETLIG
HHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCC
TERPITAISQELSYSDVNYFCKSFKKEVGVSPTEYRRQSRLAQGAPPPREAALATG
CCCCHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8071226; 9352910; 11677609; 8501034 [H]