| Definition | Rhodospirillum rubrum ATCC 11170 chromosome, complete genome. |
|---|---|
| Accession | NC_007643 |
| Length | 4,352,825 |
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The map label for this gene is dppD [H]
Identifier: 83592141
GI number: 83592141
Start: 957326
End: 958156
Strand: Direct
Name: dppD [H]
Synonym: Rru_A0802
Alternate gene names: 83592141
Gene position: 957326-958156 (Clockwise)
Preceding gene: 83592140
Following gene: 83592142
Centisome position: 21.99
GC content: 66.19
Gene sequence:
>831_bases ATGAATACTCTCAGCCCTTTGCTCGATGTGCGAACCCTATCGGTGGACTTTCCAACCCGTCACGGCCTTGCCGCCGCCCT GCGCGGGGTCTCGTTCTCGGTGGGACGCGAAAAGCTTGGCATCGTCGGCGAGTCCGGTTCGGGCAAATCAACCGTCGCCC GGGCGATCCTCGATAGTCTTCCCCCCCAGGCCCGGGTCAGCGTCGAGGGATTGACCTTCGAGGGGGCCGATCTGCGGACG ATGCCCAAGGCAAGGCGGGCGGGGCTTCTGGGCCGCCGTCTGTCGATGGTGCCGCAAGACCCCCGTTTTGGCTTGAATCC GGTGATCAGCGTCGGCCGCCAAATCGCCGAAAGCTATCGCCTTGTCGGCGGCCATGGTCGGCGCGAGGCGCGGGCCCTGG CGCTCGACGCCCTGGCGATGGTCAAGATCGCCGATCCGCGCGCCACCTATGATCGCTATCCCCACCAGTTGTCGGGGGGG ATGGGGCAAAGGGTGATGATCGCCATGATGCTGGCGCCGGGGCCCGCCTTGTTGTTCGCCGACGAGCCGACCTCGGCGCT GGATTCGACCACGACTGGGCATGTCCTTGAAACCCTTCATGATCTGGTTTCGGCGCGCGGCATGGGGTTGGTTCTCATCA GCCATGACCTGGATCTGGTCGCCGCCTTTTGTGATCGCATCTTGGTGATGAACCAGGGGGAAATCGTTGAGAGCTGCCGG GCGGGCGATCTGTCGCGCGTCCGCCATCCCTATAGCCGGCGGTTGCTGGCGGCGGTGCCCCGGCTGCCGGTGCCCCGCGA CAGGAGTTCCGCCGCCCTGGGGGGGCGGTGA
Upstream 100 bases:
>100_bases GGCGACCCTGCCCGGCGTGGCGATCTTCATCGTCAGCTTTGCCTTCAACCTGCTTGGCGACGGCGTCAGCGAGGTTCTTG ATCCAAAGGAATGACCGGTC
Downstream 100 bases:
>100_bases TGGCGGCGGCGGGGGTATTGCTTCATGTGCGCGATCTTTCGGTGCGCTTTGGCAAGGCGGTGGCCCTGCACCCCCTGTCC TTCGATGTCGAGCCGGGCGG
Product: ABC transporter protein
Products: ADP; phosphate; dipeptides [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 276; Mature: 276
Protein sequence:
>276_residues MNTLSPLLDVRTLSVDFPTRHGLAAALRGVSFSVGREKLGIVGESGSGKSTVARAILDSLPPQARVSVEGLTFEGADLRT MPKARRAGLLGRRLSMVPQDPRFGLNPVISVGRQIAESYRLVGGHGRREARALALDALAMVKIADPRATYDRYPHQLSGG MGQRVMIAMMLAPGPALLFADEPTSALDSTTTGHVLETLHDLVSARGMGLVLISHDLDLVAAFCDRILVMNQGEIVESCR AGDLSRVRHPYSRRLLAAVPRLPVPRDRSSAALGGR
Sequences:
>Translated_276_residues MNTLSPLLDVRTLSVDFPTRHGLAAALRGVSFSVGREKLGIVGESGSGKSTVARAILDSLPPQARVSVEGLTFEGADLRT MPKARRAGLLGRRLSMVPQDPRFGLNPVISVGRQIAESYRLVGGHGRREARALALDALAMVKIADPRATYDRYPHQLSGG MGQRVMIAMMLAPGPALLFADEPTSALDSTTTGHVLETLHDLVSARGMGLVLISHDLDLVAAFCDRILVMNQGEIVESCR AGDLSRVRHPYSRRLLAAVPRLPVPRDRSSAALGGR >Mature_276_residues MNTLSPLLDVRTLSVDFPTRHGLAAALRGVSFSVGREKLGIVGESGSGKSTVARAILDSLPPQARVSVEGLTFEGADLRT MPKARRAGLLGRRLSMVPQDPRFGLNPVISVGRQIAESYRLVGGHGRREARALALDALAMVKIADPRATYDRYPHQLSGG MGQRVMIAMMLAPGPALLFADEPTSALDSTTTGHVLETLHDLVSARGMGLVLISHDLDLVAAFCDRILVMNQGEIVESCR AGDLSRVRHPYSRRLLAAVPRLPVPRDRSSAALGGR
Specific function: Part of the binding-protein-dependent transport system for dipeptides. Probably responsible for energy coupling to the transport system [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI42490749, Length=271, Percent_Identity=30.2583025830258, Blast_Score=79, Evalue=3e-15, Organism=Escherichia coli, GI1789963, Length=264, Percent_Identity=44.3181818181818, Blast_Score=199, Evalue=2e-52, Organism=Escherichia coli, GI145693107, Length=265, Percent_Identity=43.3962264150943, Blast_Score=184, Evalue=4e-48, Organism=Escherichia coli, GI48994883, Length=258, Percent_Identity=41.4728682170543, Blast_Score=177, Evalue=9e-46, Organism=Escherichia coli, GI1787759, Length=266, Percent_Identity=39.4736842105263, Blast_Score=172, Evalue=3e-44, Organism=Escherichia coli, GI1787548, Length=264, Percent_Identity=36.3636363636364, Blast_Score=155, Evalue=3e-39, Organism=Escherichia coli, GI1788506, Length=270, Percent_Identity=37.037037037037, Blast_Score=152, Evalue=3e-38, Organism=Escherichia coli, GI1789962, Length=274, Percent_Identity=37.2262773722628, Blast_Score=144, Evalue=6e-36, Organism=Escherichia coli, GI1787758, Length=278, Percent_Identity=35.2517985611511, Blast_Score=133, Evalue=1e-32, Organism=Escherichia coli, GI1787500, Length=269, Percent_Identity=35.6877323420074, Blast_Score=128, Evalue=5e-31, Organism=Escherichia coli, GI48994997, Length=260, Percent_Identity=36.9230769230769, Blast_Score=127, Evalue=9e-31, Organism=Escherichia coli, GI1789891, Length=254, Percent_Identity=35.4330708661417, Blast_Score=112, Evalue=3e-26, Organism=Escherichia coli, GI1786398, Length=246, Percent_Identity=31.7073170731707, Blast_Score=112, Evalue=3e-26, Organism=Escherichia coli, GI1789672, Length=237, Percent_Identity=32.4894514767932, Blast_Score=102, Evalue=2e-23, Organism=Escherichia coli, GI1789890, Length=237, Percent_Identity=30.8016877637131, Blast_Score=101, Evalue=7e-23, Organism=Escherichia coli, GI1788225, Length=253, Percent_Identity=33.9920948616601, Blast_Score=100, Evalue=8e-23, Organism=Escherichia coli, GI1787547, Length=264, Percent_Identity=27.6515151515151, Blast_Score=99, Evalue=3e-22, Organism=Escherichia coli, GI1787029, Length=250, Percent_Identity=31.6, Blast_Score=92, Evalue=4e-20, Organism=Escherichia coli, GI1789032, Length=221, Percent_Identity=34.3891402714932, Blast_Score=90, Evalue=1e-19, Organism=Escherichia coli, GI1787089, Length=235, Percent_Identity=29.7872340425532, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI87081791, Length=253, Percent_Identity=28.4584980237154, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI1786703, Length=216, Percent_Identity=36.5740740740741, Blast_Score=86, Evalue=2e-18, Organism=Escherichia coli, GI1788644, Length=231, Percent_Identity=35.4978354978355, Blast_Score=86, Evalue=3e-18, Organism=Escherichia coli, GI1786872, Length=197, Percent_Identity=32.48730964467, Blast_Score=86, Evalue=3e-18, Organism=Escherichia coli, GI1788450, Length=210, Percent_Identity=32.8571428571429, Blast_Score=84, Evalue=7e-18, Organism=Escherichia coli, GI1787105, Length=236, Percent_Identity=31.7796610169492, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI1786345, Length=238, Percent_Identity=28.9915966386555, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI87081834, Length=213, Percent_Identity=34.7417840375587, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI1786319, Length=262, Percent_Identity=30.1526717557252, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI87081709, Length=236, Percent_Identity=28.3898305084746, Blast_Score=79, Evalue=2e-16, Organism=Escherichia coli, GI1789991, Length=215, Percent_Identity=29.3023255813954, Blast_Score=79, Evalue=4e-16, Organism=Escherichia coli, GI1790162, Length=245, Percent_Identity=29.7959183673469, Blast_Score=77, Evalue=9e-16, Organism=Escherichia coli, GI1787712, Length=245, Percent_Identity=29.7959183673469, Blast_Score=77, Evalue=2e-15, Organism=Escherichia coli, GI1788761, Length=221, Percent_Identity=29.8642533936652, Blast_Score=75, Evalue=3e-15, Organism=Escherichia coli, GI1789873, Length=214, Percent_Identity=30.8411214953271, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI1790739, Length=235, Percent_Identity=28.5106382978723, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI1790544, Length=237, Percent_Identity=28.6919831223629, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1787370, Length=201, Percent_Identity=31.3432835820896, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI1786803, Length=197, Percent_Identity=28.9340101522843, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI1786698, Length=244, Percent_Identity=28.6885245901639, Blast_Score=69, Evalue=4e-13, Organism=Escherichia coli, GI1790190, Length=268, Percent_Identity=25, Blast_Score=69, Evalue=5e-13, Organism=Escherichia coli, GI1786253, Length=244, Percent_Identity=29.0983606557377, Blast_Score=68, Evalue=6e-13, Organism=Escherichia coli, GI1787792, Length=111, Percent_Identity=35.1351351351351, Blast_Score=65, Evalue=3e-12, Organism=Escherichia coli, GI1786563, Length=229, Percent_Identity=29.2576419213974, Blast_Score=65, Evalue=4e-12, Organism=Escherichia coli, GI1789586, Length=265, Percent_Identity=27.5471698113208, Blast_Score=65, Evalue=4e-12, Organism=Escherichia coli, GI48994943, Length=226, Percent_Identity=28.7610619469027, Blast_Score=62, Evalue=6e-11, Organism=Escherichia coli, GI87081782, Length=234, Percent_Identity=28.6324786324786, Blast_Score=61, Evalue=9e-11, Organism=Caenorhabditis elegans, GI193211015, Length=258, Percent_Identity=31.0077519379845, Blast_Score=81, Evalue=6e-16, Organism=Caenorhabditis elegans, GI71996809, Length=258, Percent_Identity=31.0077519379845, Blast_Score=81, Evalue=6e-16, Organism=Caenorhabditis elegans, GI193209708, Length=241, Percent_Identity=31.9502074688797, Blast_Score=81, Evalue=7e-16, Organism=Caenorhabditis elegans, GI193211017, Length=258, Percent_Identity=31.0077519379845, Blast_Score=80, Evalue=8e-16, Organism=Caenorhabditis elegans, GI212646699, Length=242, Percent_Identity=28.099173553719, Blast_Score=74, Evalue=1e-13, Organism=Caenorhabditis elegans, GI71992290, Length=234, Percent_Identity=28.2051282051282, Blast_Score=71, Evalue=6e-13, Organism=Caenorhabditis elegans, GI17541710, Length=225, Percent_Identity=31.5555555555556, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI193202349, Length=235, Percent_Identity=26.3829787234043, Blast_Score=68, Evalue=4e-12, Organism=Caenorhabditis elegans, GI115534520, Length=235, Percent_Identity=28.936170212766, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17558664, Length=239, Percent_Identity=27.1966527196653, Blast_Score=64, Evalue=9e-11, Organism=Saccharomyces cerevisiae, GI6322980, Length=265, Percent_Identity=27.1698113207547, Blast_Score=81, Evalue=2e-16, Organism=Saccharomyces cerevisiae, GI6324985, Length=243, Percent_Identity=27.5720164609054, Blast_Score=75, Evalue=8e-15, Organism=Drosophila melanogaster, GI85726357, Length=256, Percent_Identity=30.859375, Blast_Score=77, Evalue=2e-14, Organism=Drosophila melanogaster, GI45552361, Length=228, Percent_Identity=29.3859649122807, Blast_Score=72, Evalue=4e-13, Organism=Drosophila melanogaster, GI45552363, Length=228, Percent_Identity=29.3859649122807, Blast_Score=72, Evalue=4e-13, Organism=Drosophila melanogaster, GI45552337, Length=228, Percent_Identity=29.3859649122807, Blast_Score=72, Evalue=4e-13, Organism=Drosophila melanogaster, GI45552355, Length=228, Percent_Identity=29.3859649122807, Blast_Score=72, Evalue=4e-13, Organism=Drosophila melanogaster, GI45552351, Length=228, Percent_Identity=29.3859649122807, Blast_Score=72, Evalue=4e-13, Organism=Drosophila melanogaster, GI45552347, Length=228, Percent_Identity=29.3859649122807, Blast_Score=72, Evalue=4e-13, Organism=Drosophila melanogaster, GI45552341, Length=228, Percent_Identity=29.3859649122807, Blast_Score=72, Evalue=4e-13, Organism=Drosophila melanogaster, GI45552339, Length=228, Percent_Identity=29.3859649122807, Blast_Score=72, Evalue=4e-13, Organism=Drosophila melanogaster, GI45552335, Length=228, Percent_Identity=29.3859649122807, Blast_Score=72, Evalue=4e-13, Organism=Drosophila melanogaster, GI24583969, Length=228, Percent_Identity=29.3859649122807, Blast_Score=72, Evalue=4e-13, Organism=Drosophila melanogaster, GI45552359, Length=228, Percent_Identity=29.3859649122807, Blast_Score=72, Evalue=4e-13, Organism=Drosophila melanogaster, GI45552345, Length=228, Percent_Identity=29.3859649122807, Blast_Score=72, Evalue=4e-13, Organism=Drosophila melanogaster, GI45550972, Length=228, Percent_Identity=29.3859649122807, Blast_Score=72, Evalue=4e-13, Organism=Drosophila melanogaster, GI45552357, Length=228, Percent_Identity=29.3859649122807, Blast_Score=72, Evalue=5e-13, Organism=Drosophila melanogaster, GI45552353, Length=228, Percent_Identity=29.3859649122807, Blast_Score=72, Evalue=5e-13, Organism=Drosophila melanogaster, GI45552349, Length=228, Percent_Identity=29.3859649122807, Blast_Score=72, Evalue=5e-13, Organism=Drosophila melanogaster, GI45552343, Length=228, Percent_Identity=29.3859649122807, Blast_Score=72, Evalue=5e-13, Organism=Drosophila melanogaster, GI28574533, Length=206, Percent_Identity=30.5825242718447, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI85816269, Length=203, Percent_Identity=29.5566502463054, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI24580553, Length=203, Percent_Identity=29.5566502463054, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI85724864, Length=203, Percent_Identity=29.5566502463054, Blast_Score=69, Evalue=4e-12, Organism=Drosophila melanogaster, GI24580555, Length=203, Percent_Identity=29.5566502463054, Blast_Score=69, Evalue=4e-12, Organism=Drosophila melanogaster, GI24641565, Length=221, Percent_Identity=30.316742081448, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI28573573, Length=254, Percent_Identity=24.8031496062992, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI28573571, Length=254, Percent_Identity=24.8031496062992, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI116007184, Length=214, Percent_Identity=27.1028037383178, Blast_Score=64, Evalue=7e-11, Organism=Drosophila melanogaster, GI221500365, Length=214, Percent_Identity=27.1028037383178, Blast_Score=64, Evalue=8e-11, Organism=Drosophila melanogaster, GI221512771, Length=249, Percent_Identity=23.6947791164659, Blast_Score=64, Evalue=9e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 - InterPro: IPR010066 - InterPro: IPR013563 [H]
Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]
EC number: NA
Molecular weight: Translated: 29569; Mature: 29569
Theoretical pI: Translated: 10.82; Mature: 10.82
Prosite motif: PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNTLSPLLDVRTLSVDFPTRHGLAAALRGVSFSVGREKLGIVGESGSGKSTVARAILDSL CCCHHHHHHHEEEEECCCCHHHHHHHHHCCCHHCCHHHHEEEECCCCCHHHHHHHHHHHC PPQARVSVEGLTFEGADLRTMPKARRAGLLGRRLSMVPQDPRFGLNPVISVGRQIAESYR CCCCEEEEECEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH LVGGHGRREARALALDALAMVKIADPRATYDRYPHQLSGGMGQRVMIAMMLAPGPALLFA HCCCCCCHHHHHHHHHHHHHEEECCCCCHHHCCCHHHCCCCCHHHHHHEEECCCCEEEEE DEPTSALDSTTTGHVLETLHDLVSARGMGLVLISHDLDLVAAFCDRILVMNQGEIVESCR CCCCHHHCCCCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCHHHHHHC AGDLSRVRHPYSRRLLAAVPRLPVPRDRSSAALGGR CCCHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MNTLSPLLDVRTLSVDFPTRHGLAAALRGVSFSVGREKLGIVGESGSGKSTVARAILDSL CCCHHHHHHHEEEEECCCCHHHHHHHHHCCCHHCCHHHHEEEECCCCCHHHHHHHHHHHC PPQARVSVEGLTFEGADLRTMPKARRAGLLGRRLSMVPQDPRFGLNPVISVGRQIAESYR CCCCEEEEECEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH LVGGHGRREARALALDALAMVKIADPRATYDRYPHQLSGGMGQRVMIAMMLAPGPALLFA HCCCCCCHHHHHHHHHHHHHEEECCCCCHHHCCCHHHCCCCCHHHHHHEEECCCCEEEEE DEPTSALDSTTTGHVLETLHDLVSARGMGLVLISHDLDLVAAFCDRILVMNQGEIVESCR CCCCHHHCCCCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCHHHHHHC AGDLSRVRHPYSRRLLAAVPRLPVPRDRSSAALGGR CCCHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; dipeptides [Periplasm]; H2O [C]
Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 7542800; 8550458 [H]