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The map label for this gene is nifD2 [H]

Identifier: 83592133

GI number: 83592133

Start: 947854

End: 949389

Strand: Reverse

Name: nifD2 [H]

Synonym: Rru_A0794

Alternate gene names: 83592133

Gene position: 949389-947854 (Counterclockwise)

Preceding gene: 83592134

Following gene: 83592132

Centisome position: 21.81

GC content: 64.32

Gene sequence:

>1536_bases
ATGCCCATCAATCTCAAGACATCGGTGGTCGAGAGCCGCGAACAGCGGCTGGGCACCATCATCGCCTGGGACGGCAAGGC
CTCTGACCTGTCCAAGGAATCGGCCTATGCGCGCAGCGAGGGCTGCGGCAGCGCCTGCGGCGCCAAGGCCCGCCGGGTCT
GCGAGATGCGCAGCCCGTTCAGCCAGGGCTCGGTCTGTAGCGAACAGATGGTCGAATGCCAAGCCGGCAACGTGCGCGGC
GCCGTGCTGGTCCAGCATTCGCCGATCGGCTGCGGCGCCGGTCAGGTGATCTATAATTCGATCTTCCGCAATGGTCTGGC
GATCCGCGGCCTGCCGGTGGAGAACCTCCATCTGATCAGCACCAACCTGCGCGAACGCGACATGGTCTATGGCGGGCTCG
ACAAGCTCGAACGCACCATCCGCGACGCCTGGGAGCGCCATCACCCCCAGGCCATTTTCATCGCCACCTCCTGCCCGACG
GCGATCATTGGCGACGACATCGAAAGCGTCGCTTCGCAGCTTGAAGCCGAGTTCGGCATACCGGTCATACCGCTGCACTG
CGAGGGCTTCAAATCCAAGCATTGGAGCACCGGCTTCGACGCCACCCAGCACGGCATCTTGCGCCAGATCGTCCGCAAAA
ATCCCGAGCGCAAGCAGGAAGACCTGGTCAACGTCATCAATCTGTGGGGATCGGATGTCTTTGGCCCGATGCTCGGCGAA
TTGGGTTTGCGGGTGAACTACGTCGTCGATCTCGCCACCGTCGAGGATCTGGCCCAGATGTCGGAGGCGGCGGCAACCGT
CGGCTTCTGCTACACGCTGTCGACCTATATGGCCGCCGCCCTGGAACAGGAATTCGGCGTTCCCGAGGTCAAGGCGCCCA
TGCCCTATGGCTTCGCCGGCACCGACGCCTGGCTGCGCGAGATCGCCCGCGTCACCCACCGCGAGGAGCAGGCCGAGGCC
TATATCGCCCGCGAGCACGCCCGGGTGAAGCCACAGCTTGAGGCCCTGCGCGAGAAGCTCAAGGGCATCAAGGGCTTCGT
CTCCACCGGCTCGGCCTATGCCCATGGCATGATCCAGGTGCTGCGCGAACTGGGCGTCACCGTCGACGGCTCGTTGGTCT
TCCACCACGATCCGGTCTACGACAGCCAGGATCCGCGTCAGGATTCCCTTGCCCATCTGGTCGACAACTATGGCGACGTC
GGCCATTTCAGCGTCGGCAATCGCCAGCAGTTCCAGTTCTACGGCCTGCTTCAGCGGGTGAAGCCCGATTTCATCATCAT
CCGCCACAACGGGTTGGCGCCGCTGGCCTCGCGCCTGGGCATCCCGGCCATTCCGCTGGGCGATGAACATATCGCCGTGG
GCTATCAGGGCATCTTGAACCTGGGTGAATCCATCCTCGATGTGCTGGCCCACCGCAAGTTCCACGAAGACATCGCCGCC
CATGTCCGCCTGCCCTATCGCCAGGACTGGCTGGCCCGCGATCCCTTCGATCTGGCCCGGCAAAGCGCCGGCCAGCCGCG
CCGTCCCGCAGAGTGA

Upstream 100 bases:

>100_bases
AGAGCTGCGCGACTGGTCGGCATCCTGGGCCAACCAATTGATCGAGATCGAACGGGCGAGCCAGCCGATTCCCGCCCTGG
CCTCATAACGGAGCGGCTCC

Downstream 100 bases:

>100_bases
GCCCCGTCATGCCCGATGCAGAGTCCCGTTCCCAGGTCACGGCGAAGGCCGCGCCACCACCCGCCCCCAAGACCAATTCG
ATCGAACAGGTGCGCTATAT

Product: nitrogenase

Products: NA

Alternate protein names: Dinitrogenase; Nitrogenase component I [H]

Number of amino acids: Translated: 511; Mature: 510

Protein sequence:

>511_residues
MPINLKTSVVESREQRLGTIIAWDGKASDLSKESAYARSEGCGSACGAKARRVCEMRSPFSQGSVCSEQMVECQAGNVRG
AVLVQHSPIGCGAGQVIYNSIFRNGLAIRGLPVENLHLISTNLRERDMVYGGLDKLERTIRDAWERHHPQAIFIATSCPT
AIIGDDIESVASQLEAEFGIPVIPLHCEGFKSKHWSTGFDATQHGILRQIVRKNPERKQEDLVNVINLWGSDVFGPMLGE
LGLRVNYVVDLATVEDLAQMSEAAATVGFCYTLSTYMAAALEQEFGVPEVKAPMPYGFAGTDAWLREIARVTHREEQAEA
YIAREHARVKPQLEALREKLKGIKGFVSTGSAYAHGMIQVLRELGVTVDGSLVFHHDPVYDSQDPRQDSLAHLVDNYGDV
GHFSVGNRQQFQFYGLLQRVKPDFIIIRHNGLAPLASRLGIPAIPLGDEHIAVGYQGILNLGESILDVLAHRKFHEDIAA
HVRLPYRQDWLARDPFDLARQSAGQPRRPAE

Sequences:

>Translated_511_residues
MPINLKTSVVESREQRLGTIIAWDGKASDLSKESAYARSEGCGSACGAKARRVCEMRSPFSQGSVCSEQMVECQAGNVRG
AVLVQHSPIGCGAGQVIYNSIFRNGLAIRGLPVENLHLISTNLRERDMVYGGLDKLERTIRDAWERHHPQAIFIATSCPT
AIIGDDIESVASQLEAEFGIPVIPLHCEGFKSKHWSTGFDATQHGILRQIVRKNPERKQEDLVNVINLWGSDVFGPMLGE
LGLRVNYVVDLATVEDLAQMSEAAATVGFCYTLSTYMAAALEQEFGVPEVKAPMPYGFAGTDAWLREIARVTHREEQAEA
YIAREHARVKPQLEALREKLKGIKGFVSTGSAYAHGMIQVLRELGVTVDGSLVFHHDPVYDSQDPRQDSLAHLVDNYGDV
GHFSVGNRQQFQFYGLLQRVKPDFIIIRHNGLAPLASRLGIPAIPLGDEHIAVGYQGILNLGESILDVLAHRKFHEDIAA
HVRLPYRQDWLARDPFDLARQSAGQPRRPAE
>Mature_510_residues
PINLKTSVVESREQRLGTIIAWDGKASDLSKESAYARSEGCGSACGAKARRVCEMRSPFSQGSVCSEQMVECQAGNVRGA
VLVQHSPIGCGAGQVIYNSIFRNGLAIRGLPVENLHLISTNLRERDMVYGGLDKLERTIRDAWERHHPQAIFIATSCPTA
IIGDDIESVASQLEAEFGIPVIPLHCEGFKSKHWSTGFDATQHGILRQIVRKNPERKQEDLVNVINLWGSDVFGPMLGEL
GLRVNYVVDLATVEDLAQMSEAAATVGFCYTLSTYMAAALEQEFGVPEVKAPMPYGFAGTDAWLREIARVTHREEQAEAY
IAREHARVKPQLEALREKLKGIKGFVSTGSAYAHGMIQVLRELGVTVDGSLVFHHDPVYDSQDPRQDSLAHLVDNYGDVG
HFSVGNRQQFQFYGLLQRVKPDFIIIRHNGLAPLASRLGIPAIPLGDEHIAVGYQGILNLGESILDVLAHRKFHEDIAAH
VRLPYRQDWLARDPFDLARQSAGQPRRPAE

Specific function: This molybdenum-iron protein is part of the nitrogenase complex that catalyzes the key enzymatic reactions in nitrogen fixation [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nifD/nifK/nifE/nifN family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000510
- InterPro:   IPR010143
- InterPro:   IPR000318
- InterPro:   IPR005972 [H]

Pfam domain/function: PF00148 Oxidored_nitro [H]

EC number: =1.18.6.1 [H]

Molecular weight: Translated: 56447; Mature: 56316

Theoretical pI: Translated: 6.55; Mature: 6.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPINLKTSVVESREQRLGTIIAWDGKASDLSKESAYARSEGCGSACGAKARRVCEMRSPF
CCCCCHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCC
SQGSVCSEQMVECQAGNVRGAVLVQHSPIGCGAGQVIYNSIFRNGLAIRGLPVENLHLIS
CCCCHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCEEECCCCCCEEEEE
TNLRERDMVYGGLDKLERTIRDAWERHHPQAIFIATSCPTAIIGDDIESVASQLEAEFGI
CCCHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHCCCHHHHHHHHHHHCCC
PVIPLHCEGFKSKHWSTGFDATQHGILRQIVRKNPERKQEDLVNVINLWGSDVFGPMLGE
CEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHH
LGLRVNYVVDLATVEDLAQMSEAAATVGFCYTLSTYMAAALEQEFGVPEVKAPMPYGFAG
HCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
TDAWLREIARVTHREEQAEAYIAREHARVKPQLEALREKLKGIKGFVSTGSAYAHGMIQV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
LRELGVTVDGSLVFHHDPVYDSQDPRQDSLAHLVDNYGDVGHFSVGNRQQFQFYGLLQRV
HHHHCCEECCEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHC
KPDFIIIRHNGLAPLASRLGIPAIPLGDEHIAVGYQGILNLGESILDVLAHRKFHEDIAA
CCCEEEEECCCCHHHHHHCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HVRLPYRQDWLARDPFDLARQSAGQPRRPAE
HHCCCCHHCCCCCCCHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
PINLKTSVVESREQRLGTIIAWDGKASDLSKESAYARSEGCGSACGAKARRVCEMRSPF
CCCCHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCC
SQGSVCSEQMVECQAGNVRGAVLVQHSPIGCGAGQVIYNSIFRNGLAIRGLPVENLHLIS
CCCCHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCEEECCCCCCEEEEE
TNLRERDMVYGGLDKLERTIRDAWERHHPQAIFIATSCPTAIIGDDIESVASQLEAEFGI
CCCHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHCCCHHHHHHHHHHHCCC
PVIPLHCEGFKSKHWSTGFDATQHGILRQIVRKNPERKQEDLVNVINLWGSDVFGPMLGE
CEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHH
LGLRVNYVVDLATVEDLAQMSEAAATVGFCYTLSTYMAAALEQEFGVPEVKAPMPYGFAG
HCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
TDAWLREIARVTHREEQAEAYIAREHARVKPQLEALREKLKGIKGFVSTGSAYAHGMIQV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
LRELGVTVDGSLVFHHDPVYDSQDPRQDSLAHLVDNYGDVGHFSVGNRQQFQFYGLLQRV
HHHHCCEECCEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHC
KPDFIIIRHNGLAPLASRLGIPAIPLGDEHIAVGYQGILNLGESILDVLAHRKFHEDIAA
CCCEEEEECCCCHHHHHHCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HVRLPYRQDWLARDPFDLARQSAGQPRRPAE
HHCCCCHHCCCCCCCHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7961410 [H]