| Definition | Rhodospirillum rubrum ATCC 11170 chromosome, complete genome. |
|---|---|
| Accession | NC_007643 |
| Length | 4,352,825 |
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The map label for this gene is nifK [H]
Identifier: 83592132
GI number: 83592132
Start: 946445
End: 947845
Strand: Reverse
Name: nifK [H]
Synonym: Rru_A0793
Alternate gene names: 83592132
Gene position: 947845-946445 (Counterclockwise)
Preceding gene: 83592133
Following gene: 83592131
Centisome position: 21.78
GC content: 62.53
Gene sequence:
>1401_bases ATGCCCGATGCAGAGTCCCGTTCCCAGGTCACGGCGAAGGCCGCGCCACCACCCGCCCCCAAGACCAATTCGATCGAACA GGTGCGCTATATCTGTTCGATCGGCGCCATGCACAGCGCCTCGGCTATCCCACGGGTGATCCCGATCACCCATTGCGGCC CGGGCTGCGCCGACAAGCAGTTCATGAACGTCGCCTTCTATAATGGCTTCCAGGGCGGCGGCTATGGCGGCGGAGCGGTG GTGCCGAGCACCAACGCCACCGAGCGCGAGGTGGTCTTCGGCGGCGCCGAGCGCCTGGACGAATTGATCGGCGCCTCGCT GCAGGTGCTTGACGCCGACCTGTTCGTGGTGCTGACCGGCTGTATTCCCGATCTGGTCGGCGATGACATCGGCTCGGTGG TCGGCCCCTATCAGAAGCGCGGCGTGCCGATCGTCTATGCCGAGACTGGCGGCTTTCGCGGCAATAACTTCACCGGCCAC GAACTGGTGACCAAGGCGATCATCGACCAGTTCGTTGGCGATTACGATGCGGAGCGCGACGGGGCCCGCGAGCCCCATAC GGTCAATGTCTGGTCACTGCTGCCCTACCACAACACCTTCTGGCGCGGTGATTTGACCGAGATCAAGCGGCTGCTCGAAG GCATCGGCCTTAAGGTCAATATCCTGTTCGGCCCGCAATCGGCCGGGGTGGCGGAATGGAAGGCCATCCCGCGCGCCGGC TTTAATCTGGTGCTCTCGCCCTGGCTGGGGCTGGACACGGCGCGCCATTTGGACCGCAAATACGGCCAGCCGACCCTGCA TCGACCGATCATCCCGATCGGCGCCAAGGAAACCGGCGCCTTCCTGCGCGAGGTGGCGGCTTTCGCCGGCCTCGACAGCG CGGTGGTCGAGGCCTTCATCACCGCCGAAGAAGCCGTTTATTACCGCTATCTGGAGGACTTCACCGATTTCTACGCGGAG TACTGGTGGGGTCTGCCGGCCAAATTCGCCGTCATCGGCGACAGCGCCTATAATCTGGCCTTGACCAAATTCCTGGTAAA CCAGTTGGGCCTGATACCGGGGCTGCAGATCATCACCGACAATCCGCCCGAGGAGGTGCGCGAGGATATCCGCGCCCATT ACCACGCGATCGCCGATGACGTGGCCACCGATGTCTCTTTTGAAGAAGACAGCTACACCATCCACCAAAAGATCCGCGCC ACCGATTTCGGCCACAAGGCGCCGATCCTGTTTGGCACCACCTGGGAACGCGACCTTGCCAAGGAATTGAAGGGGGCGAT CGTCGAGGTCGGCTTCCCGGCATCCTATGAAGTCGTGCTGTCGCGCAGCTATCTTGGCTACCGGGGCGCCCTGACTTTGC TGGAAAAAATCTACACAACCACCGTCAGCGCAAGCGCTTGA
Upstream 100 bases:
>100_bases TCCGCCTGCCCTATCGCCAGGACTGGCTGGCCCGCGATCCCTTCGATCTGGCCCGGCAAAGCGCCGGCCAGCCGCGCCGT CCCGCAGAGTGAGCCCCGTC
Downstream 100 bases:
>100_bases AATCCAAATATTTTGTGGGGAATGGCGGCATCCGGGCGGAAGGCCGCCATTTTCAATACCCTTAAGGATAGCTAAATCGA CGATTTAGATGTTCTGAATT
Product: nitrogenase
Products: NA
Alternate protein names: Dinitrogenase; Nitrogenase component I [H]
Number of amino acids: Translated: 466; Mature: 465
Protein sequence:
>466_residues MPDAESRSQVTAKAAPPPAPKTNSIEQVRYICSIGAMHSASAIPRVIPITHCGPGCADKQFMNVAFYNGFQGGGYGGGAV VPSTNATEREVVFGGAERLDELIGASLQVLDADLFVVLTGCIPDLVGDDIGSVVGPYQKRGVPIVYAETGGFRGNNFTGH ELVTKAIIDQFVGDYDAERDGAREPHTVNVWSLLPYHNTFWRGDLTEIKRLLEGIGLKVNILFGPQSAGVAEWKAIPRAG FNLVLSPWLGLDTARHLDRKYGQPTLHRPIIPIGAKETGAFLREVAAFAGLDSAVVEAFITAEEAVYYRYLEDFTDFYAE YWWGLPAKFAVIGDSAYNLALTKFLVNQLGLIPGLQIITDNPPEEVREDIRAHYHAIADDVATDVSFEEDSYTIHQKIRA TDFGHKAPILFGTTWERDLAKELKGAIVEVGFPASYEVVLSRSYLGYRGALTLLEKIYTTTVSASA
Sequences:
>Translated_466_residues MPDAESRSQVTAKAAPPPAPKTNSIEQVRYICSIGAMHSASAIPRVIPITHCGPGCADKQFMNVAFYNGFQGGGYGGGAV VPSTNATEREVVFGGAERLDELIGASLQVLDADLFVVLTGCIPDLVGDDIGSVVGPYQKRGVPIVYAETGGFRGNNFTGH ELVTKAIIDQFVGDYDAERDGAREPHTVNVWSLLPYHNTFWRGDLTEIKRLLEGIGLKVNILFGPQSAGVAEWKAIPRAG FNLVLSPWLGLDTARHLDRKYGQPTLHRPIIPIGAKETGAFLREVAAFAGLDSAVVEAFITAEEAVYYRYLEDFTDFYAE YWWGLPAKFAVIGDSAYNLALTKFLVNQLGLIPGLQIITDNPPEEVREDIRAHYHAIADDVATDVSFEEDSYTIHQKIRA TDFGHKAPILFGTTWERDLAKELKGAIVEVGFPASYEVVLSRSYLGYRGALTLLEKIYTTTVSASA >Mature_465_residues PDAESRSQVTAKAAPPPAPKTNSIEQVRYICSIGAMHSASAIPRVIPITHCGPGCADKQFMNVAFYNGFQGGGYGGGAVV PSTNATEREVVFGGAERLDELIGASLQVLDADLFVVLTGCIPDLVGDDIGSVVGPYQKRGVPIVYAETGGFRGNNFTGHE LVTKAIIDQFVGDYDAERDGAREPHTVNVWSLLPYHNTFWRGDLTEIKRLLEGIGLKVNILFGPQSAGVAEWKAIPRAGF NLVLSPWLGLDTARHLDRKYGQPTLHRPIIPIGAKETGAFLREVAAFAGLDSAVVEAFITAEEAVYYRYLEDFTDFYAEY WWGLPAKFAVIGDSAYNLALTKFLVNQLGLIPGLQIITDNPPEEVREDIRAHYHAIADDVATDVSFEEDSYTIHQKIRAT DFGHKAPILFGTTWERDLAKELKGAIVEVGFPASYEVVLSRSYLGYRGALTLLEKIYTTTVSASA
Specific function: This molybdenum-iron protein is part of the nitrogenase complex that catalyzes the key enzymatic reactions in nitrogen fixation [H]
COG id: COG2710
COG function: function code C; Nitrogenase molybdenum-iron protein, alpha and beta chains
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the nifD/nifK/nifE/nifN family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000510 - InterPro: IPR000318 - InterPro: IPR005976 [H]
Pfam domain/function: PF00148 Oxidored_nitro [H]
EC number: =1.18.6.1 [H]
Molecular weight: Translated: 50806; Mature: 50675
Theoretical pI: Translated: 4.92; Mature: 4.92
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 0.6 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 0.4 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPDAESRSQVTAKAAPPPAPKTNSIEQVRYICSIGAMHSASAIPRVIPITHCGPGCADKQ CCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHCCHHHHCCCCCEEEEECCCCCCCCHH FMNVAFYNGFQGGGYGGGAVVPSTNATEREVVFGGAERLDELIGASLQVLDADLFVVLTG HHEEHEECCCCCCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHCCHHHHHHHHHHHHHHH CIPDLVGDDIGSVVGPYQKRGVPIVYAETGGFRGNNFTGHELVTKAIIDQFVGDYDAERD HHHHHHCCHHHHHCCCHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCC GAREPHTVNVWSLLPYHNTFWRGDLTEIKRLLEGIGLKVNILFGPQSAGVAEWKAIPRAG CCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHCCCCC FNLVLSPWLGLDTARHLDRKYGQPTLHRPIIPIGAKETGAFLREVAAFAGLDSAVVEAFI CCEEECCCCCCHHHHHHHHHCCCCCCCCCCEECCCCHHHHHHHHHHHHHCCCHHHHHHHH TAEEAVYYRYLEDFTDFYAEYWWGLPAKFAVIGDSAYNLALTKFLVNQLGLIPGLQIITD HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCCCEEEEC NPPEEVREDIRAHYHAIADDVATDVSFEEDSYTIHQKIRATDFGHKAPILFGTTWERDLA CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCEEECCCCHHHHH KELKGAIVEVGFPASYEVVLSRSYLGYRGALTLLEKIYTTTVSASA HHHCCCEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure PDAESRSQVTAKAAPPPAPKTNSIEQVRYICSIGAMHSASAIPRVIPITHCGPGCADKQ CCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHCCHHHHCCCCCEEEEECCCCCCCCHH FMNVAFYNGFQGGGYGGGAVVPSTNATEREVVFGGAERLDELIGASLQVLDADLFVVLTG HHEEHEECCCCCCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHCCHHHHHHHHHHHHHHH CIPDLVGDDIGSVVGPYQKRGVPIVYAETGGFRGNNFTGHELVTKAIIDQFVGDYDAERD HHHHHHCCHHHHHCCCHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCC GAREPHTVNVWSLLPYHNTFWRGDLTEIKRLLEGIGLKVNILFGPQSAGVAEWKAIPRAG CCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHCCCCC FNLVLSPWLGLDTARHLDRKYGQPTLHRPIIPIGAKETGAFLREVAAFAGLDSAVVEAFI CCEEECCCCCCHHHHHHHHHCCCCCCCCCCEECCCCHHHHHHHHHHHHHCCCHHHHHHHH TAEEAVYYRYLEDFTDFYAEYWWGLPAKFAVIGDSAYNLALTKFLVNQLGLIPGLQIITD HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCCCEEEEC NPPEEVREDIRAHYHAIADDVATDVSFEEDSYTIHQKIRATDFGHKAPILFGTTWERDLA CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCEEECCCCHHHHH KELKGAIVEVGFPASYEVVLSRSYLGYRGALTLLEKIYTTTVSASA HHHCCCEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8574444 [H]