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The map label for this gene is nifD2 [H]

Identifier: 83592112

GI number: 83592112

Start: 923424

End: 924887

Strand: Reverse

Name: nifD2 [H]

Synonym: Rru_A0773

Alternate gene names: 83592112

Gene position: 924887-923424 (Counterclockwise)

Preceding gene: 83592113

Following gene: 83592111

Centisome position: 21.25

GC content: 66.73

Gene sequence:

>1464_bases
GTGACAAAGATCGAAAAGCCGCTCCAGCCGGTCGAAATCCGCGAACGACGGCTGGGCTCGATCACCGGCTATAGCGGCAC
CGCCGGCGATCTGGTCGCCCGCTCGCGCGACGGCTCGCTCGCCAACCGCGAGCGCAGCTTCCAGCAGGCCAGCATGTGCG
CGGGGCTCTGCGCCACGCTCAATCTGACGCTGATCGAAGACGCGGTGGTGATCAACCACGCCCCGGTCGGCTGCGCCGGC
GATTTCGCCCAGCTCAACCGCTGCCGGCGGCGCGGCCAGGGCAAGCGCGCCATGGAGGTGACCAACGCCCGCCTGCTGTC
GACCGCCCTGACCGAACACGACACCATTTTCGGCGGGGCGCAAAAGCTGGCCGAGACCATCGATCAGGCGGTGGCGCGCT
ATCACCCGCGCGCCATCTTCGTCACCGCCTCCTGCGCCTCGGGCATCGTCGGCGAGGATATCGACAGCGTGGTCACCGAG
GCCGAGGAGCGCCATGCCATTCCGGTGGTCGCCATTGATTGCGTCGGCTTCCGCACCCAGGTTTGGGCCACCGGCTTCGA
CATGGCCTATGACGCGCTGTTGCGCAAGATCGTCAAACCGGCCGTCACCAAGCGCCCCGAGGTGGTCAATATCGTCTGCT
TCAGCGGCAAGAAGGCCTATTTTTCCGAACTGCTGGAGCCCTTGGGTCTGGTCGCCAACCCGATCGTTCAGTTCCTGACC
GTCGCCGAGATCGAAACGCTGTCGGAAGCCGGGGCGACGGCCCATATGTGCCCGACGCTGGGCACCTGGCTCGGCGCCGG
GTTGGAACGGCGCTTCGGCGTGCCCGAGGTCAAAGCCCCGCCGCCCTATGGACTGGCCGGCACCGACCACTGGCTGCGCG
CCCTGGCCGCGCTCACCGGGCGGAGCGATCGGGTCGAGGCCTATATCGCCGCCGAACGCGCCGCCATCGCCCCCGACTTG
GCCGACTTGCGCGCCCAACTGGCTGGACGCACCGCCTTCGTCGCCGCCGGATCGGCCCAGGGCCATAGCTTCATGACCGT
GCTGCGCGACCTGGGGATCGACGTCATCGGCGGCTGCGCCCTGCACCATGATCCGGTGCTTGATCATGGCCATCAGGAGG
AAGACACCCTGGCCCATGCCACCCGCGACAAGGCCGAGGTGCCCTATGGGGTGTGCAACAAGCAATCCTTCGAGCTGATC
AATCTCGTCGGCAAGCTCAAGCCCGATATCTTGCTGATCCGCCATCCCGGGCTTGTCGTCTGGGGGGCCAAGCTTGGCAT
CCCGACGCTGTATGTCGAAGACGAGCACGCCGGCATCGGCTATCGCGGCCTGATCCGCTATGGCCGCAAGATCGCCGATT
GGATCGCCAACCCGGTTCTCGAACGCACCCTGGCCCGGCGCTCCCCCCTGCCCTTCACGCCGTGGTGGCTCGATCAGTCG
CCCTATCAATTCCTGGAGTCTTAA

Upstream 100 bases:

>100_bases
GCTGTCGATCGGCATCGAGCATCCCGACGACATCATCGGCGACATCGCCCAAGCCTTGGATCTGGTTTGATTTTCTTTCC
GCTTTAAGGAGGCGTCCCTG

Downstream 100 bases:

>100_bases
AGACCGTGACCGCTCTCGTCGAACAGCCCCGCCAGTTGTGCGCGCTTGGTGGCCAGCAATCGGTCTGCGCCATCGAACGC
GCCATTCCCATCGTCCATGC

Product: nitrogenase

Products: NA

Alternate protein names: Dinitrogenase; Nitrogenase component I [H]

Number of amino acids: Translated: 487; Mature: 486

Protein sequence:

>487_residues
MTKIEKPLQPVEIRERRLGSITGYSGTAGDLVARSRDGSLANRERSFQQASMCAGLCATLNLTLIEDAVVINHAPVGCAG
DFAQLNRCRRRGQGKRAMEVTNARLLSTALTEHDTIFGGAQKLAETIDQAVARYHPRAIFVTASCASGIVGEDIDSVVTE
AEERHAIPVVAIDCVGFRTQVWATGFDMAYDALLRKIVKPAVTKRPEVVNIVCFSGKKAYFSELLEPLGLVANPIVQFLT
VAEIETLSEAGATAHMCPTLGTWLGAGLERRFGVPEVKAPPPYGLAGTDHWLRALAALTGRSDRVEAYIAAERAAIAPDL
ADLRAQLAGRTAFVAAGSAQGHSFMTVLRDLGIDVIGGCALHHDPVLDHGHQEEDTLAHATRDKAEVPYGVCNKQSFELI
NLVGKLKPDILLIRHPGLVVWGAKLGIPTLYVEDEHAGIGYRGLIRYGRKIADWIANPVLERTLARRSPLPFTPWWLDQS
PYQFLES

Sequences:

>Translated_487_residues
MTKIEKPLQPVEIRERRLGSITGYSGTAGDLVARSRDGSLANRERSFQQASMCAGLCATLNLTLIEDAVVINHAPVGCAG
DFAQLNRCRRRGQGKRAMEVTNARLLSTALTEHDTIFGGAQKLAETIDQAVARYHPRAIFVTASCASGIVGEDIDSVVTE
AEERHAIPVVAIDCVGFRTQVWATGFDMAYDALLRKIVKPAVTKRPEVVNIVCFSGKKAYFSELLEPLGLVANPIVQFLT
VAEIETLSEAGATAHMCPTLGTWLGAGLERRFGVPEVKAPPPYGLAGTDHWLRALAALTGRSDRVEAYIAAERAAIAPDL
ADLRAQLAGRTAFVAAGSAQGHSFMTVLRDLGIDVIGGCALHHDPVLDHGHQEEDTLAHATRDKAEVPYGVCNKQSFELI
NLVGKLKPDILLIRHPGLVVWGAKLGIPTLYVEDEHAGIGYRGLIRYGRKIADWIANPVLERTLARRSPLPFTPWWLDQS
PYQFLES
>Mature_486_residues
TKIEKPLQPVEIRERRLGSITGYSGTAGDLVARSRDGSLANRERSFQQASMCAGLCATLNLTLIEDAVVINHAPVGCAGD
FAQLNRCRRRGQGKRAMEVTNARLLSTALTEHDTIFGGAQKLAETIDQAVARYHPRAIFVTASCASGIVGEDIDSVVTEA
EERHAIPVVAIDCVGFRTQVWATGFDMAYDALLRKIVKPAVTKRPEVVNIVCFSGKKAYFSELLEPLGLVANPIVQFLTV
AEIETLSEAGATAHMCPTLGTWLGAGLERRFGVPEVKAPPPYGLAGTDHWLRALAALTGRSDRVEAYIAAERAAIAPDLA
DLRAQLAGRTAFVAAGSAQGHSFMTVLRDLGIDVIGGCALHHDPVLDHGHQEEDTLAHATRDKAEVPYGVCNKQSFELIN
LVGKLKPDILLIRHPGLVVWGAKLGIPTLYVEDEHAGIGYRGLIRYGRKIADWIANPVLERTLARRSPLPFTPWWLDQSP
YQFLES

Specific function: This molybdenum-iron protein is part of the nitrogenase complex that catalyzes the key enzymatic reactions in nitrogen fixation [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nifD/nifK/nifE/nifN family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000510
- InterPro:   IPR010143
- InterPro:   IPR000318
- InterPro:   IPR005972 [H]

Pfam domain/function: PF00148 Oxidored_nitro [H]

EC number: =1.18.6.1 [H]

Molecular weight: Translated: 52878; Mature: 52747

Theoretical pI: Translated: 7.01; Mature: 7.01

Prosite motif: PS00261 GLYCO_HORMONE_BETA_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKIEKPLQPVEIRERRLGSITGYSGTAGDLVARSRDGSLANRERSFQQASMCAGLCATL
CCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHEECCCCCHHHHHHHHHHHHHHHHHHHHC
NLTLIEDAVVINHAPVGCAGDFAQLNRCRRRGQGKRAMEVTNARLLSTALTEHDTIFGGA
CCEEEECEEEEECCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHH
QKLAETIDQAVARYHPRAIFVTASCASGIVGEDIDSVVTEAEERHAIPVVAIDCVGFRTQ
HHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCHHH
VWATGFDMAYDALLRKIVKPAVTKRPEVVNIVCFSGKKAYFSELLEPLGLVANPIVQFLT
HHHCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHH
VAEIETLSEAGATAHMCPTLGTWLGAGLERRFGVPEVKAPPPYGLAGTDHWLRALAALTG
HHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHC
RSDRVEAYIAAERAAIAPDLADLRAQLAGRTAFVAAGSAQGHSFMTVLRDLGIDVIGGCA
CCCHHHHHHHHHHHHCCCCHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHCCCHHCCCCC
LHHDPVLDHGHQEEDTLAHATRDKAEVPYGVCNKQSFELINLVGKLKPDILLIRHPGLVV
CCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCEEE
WGAKLGIPTLYVEDEHAGIGYRGLIRYGRKIADWIANPVLERTLARRSPLPFTPWWLDQS
EECCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
PYQFLES
HHHHHCC
>Mature Secondary Structure 
TKIEKPLQPVEIRERRLGSITGYSGTAGDLVARSRDGSLANRERSFQQASMCAGLCATL
CCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHEECCCCCHHHHHHHHHHHHHHHHHHHHC
NLTLIEDAVVINHAPVGCAGDFAQLNRCRRRGQGKRAMEVTNARLLSTALTEHDTIFGGA
CCEEEECEEEEECCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHH
QKLAETIDQAVARYHPRAIFVTASCASGIVGEDIDSVVTEAEERHAIPVVAIDCVGFRTQ
HHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCHHH
VWATGFDMAYDALLRKIVKPAVTKRPEVVNIVCFSGKKAYFSELLEPLGLVANPIVQFLT
HHHCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHH
VAEIETLSEAGATAHMCPTLGTWLGAGLERRFGVPEVKAPPPYGLAGTDHWLRALAALTG
HHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHC
RSDRVEAYIAAERAAIAPDLADLRAQLAGRTAFVAAGSAQGHSFMTVLRDLGIDVIGGCA
CCCHHHHHHHHHHHHCCCCHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHCCCHHCCCCC
LHHDPVLDHGHQEEDTLAHATRDKAEVPYGVCNKQSFELINLVGKLKPDILLIRHPGLVV
CCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCEEE
WGAKLGIPTLYVEDEHAGIGYRGLIRYGRKIADWIANPVLERTLARRSPLPFTPWWLDQS
EECCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
PYQFLES
HHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7961410 [H]