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The map label for this gene is cph1 [H]

Identifier: 83592005

GI number: 83592005

Start: 788681

End: 790420

Strand: Reverse

Name: cph1 [H]

Synonym: Rru_A0666

Alternate gene names: 83592005

Gene position: 790420-788681 (Counterclockwise)

Preceding gene: 83592006

Following gene: 83592004

Centisome position: 18.16

GC content: 65.69

Gene sequence:

>1740_bases
TTGACGCGGCAGCTTTTGCGCGACGGGACCAGAGGAACGCGGCGATGGCGGGAAAGGCCGCTATCGCCCTTGCCGCGCGC
CGCTCCGCCCGCCCCACCGGACGCCTTCGGGAAAAGACGATTCCCCGGAACCCGGAGGGAGGGCACGGCGTTTGGGTCGG
GTCTCCAGAGGGGGCGAGGCGCGCCCGTCCCGCCGCCACCCCGTCGCCCACCCATCCCGCCCGCCGCGAAAGCCCGCCAC
CCGATGCCCTCGCTCACCCCCGCCTCCACCAAAGTGACGGCTCCGCTTCTGCTCGCGGCCTTCGCCGGATTGGCCCTCTT
GTTGTTCGCGACCGTCTGGCTGGGCAATCGCACGCAGATCTACGCCACCTCGTTTGACCAGACCCAAGAGATCTATATGC
GGGCGACCCGCACCTTCCGCGGGCTTCAGGACGCGGAAACCGGACAGCGCGGCTATTTGCTGACCCATGACCCAGCCTAT
CTTCAGCCCTATCACGACGCGCTGTCGCGGATGAGCGAACAGCGGCGGCTTATGAACGCCTTGATCCAGGACACCCCTTG
GGAAAGCGGGCTTGGCGCCAAATTGACGCCGCTGATCGACGCCAAGCTCGCCGAATTGGCCCGTACGGTGGATCTGGCCC
AGGCCGGGCGATGGGACGAGGCCCTGGCCCTGGTCCTGGCCGGGTCGGGCAAGACGACCATGGATCAGGCGCGAACCGTT
CTGGAAGACACCCTGGCCGAGCTCAGAAGCGCCCTGCAGACCCAGTCCGAGGAGATGAAAACCCGCTCGGCCTATCTGTT
CTGGGCGGTGACCTTCGGCGGACTGTTCATTCTCTGCGTGGCCGGCACCGCCTTCTGGCTGATCGTCAGGGCCAATTCCA
GTCTGGCCCAGGCCCAGGCGCAATTGCGCTCGCTCAACGAAAGCCTGGAAAGCCGGGTGCGCGGCCGCACCCAGGAGGTT
CAGCGGGCGAACGAGGAGATCCAGCGCTTCGCCTATATCGTCAGCCACGATCTGCGCTCGCCGCTGGTCAACGTCATGGG
CTTCACCGCCGAACTCGAAGCTGGGCTGAAGGACCTCCAGGCGCGCCACCCGATCGAGACGGGCGACGGAGCGCTCAGCG
AGGATGAGCGCGATCTTCGTGTCACCATCTTTGAAGACATGCCCGAAGCCGTGGGCTTCATCCGCTCCTCGACGGCCAAG
ATGGACGGCTTGATCAACGCCATCTTGCGGCTGTCGCGCGAAGGCCGCCGCACGATCAGCCCCGAACGCCTCGACATGAC
GGCGCTGGTGGAAAGCGTGGTCTCCACCACCACCCACAGCATCCAAGACACCGGTTCGACGGTCAGCGTCGATAAAAACC
TGCCCGAAATCGTCTCGGATCGGCTGGCGCTCAGCCAGATTTTCGCCAACCTGATCGACAACGCCATAAAATACCGCCTT
CCCGGCCGCCCCTGCGCCGTCACGATCACCGGGCGGATCGACCGCGGGCGCGCCCTGTTCCAGGTGGCCGACACCGGCCG
CGGGATCGAGCCGAAGGACCATGAGCGGATCTTCGATCTGTTCCGTCGCTCCGGCGAGCAAGACCAGCCCGGAGAGGGCA
TCGGACTGGCCCATGTCCGCACTTTGGTGCGGCGTTTGGGCGGCGAGATCACGGTCGGCTCGGTGCCTGGACAGGGGACC
ACCTTTCATATAACCCTACCTTTCGACGTAGGGCCCTATCTGGAGATCGAACCGTCATGA

Upstream 100 bases:

>100_bases
TGCTCAAGGCCGCCTGCCAGTGCCATATGGGCATGTCCACCTTCGCCGAGGCCGGGGTCACCGACCACGACTAGACCTCA
CCGCGTCAAAGGAGGCCCCT

Downstream 100 bases:

>100_bases
GCAGTGCCGCCCAGTCCGTCACCATCGTGATGATCGAGGATGATCTTGGCCACGCCCGCTTGATCGAAAAGAACATCCGC
CGCGCCGGGGTGAACAACGA

Product: multi-sensor Signal transduction histidine kinase

Products: NA

Alternate protein names: Bacteriophytochrome cph1; Light-regulated histidine kinase 1 [H]

Number of amino acids: Translated: 579; Mature: 578

Protein sequence:

>579_residues
MTRQLLRDGTRGTRRWRERPLSPLPRAAPPAPPDAFGKRRFPGTRREGTAFGSGLQRGRGAPVPPPPRRPPIPPAAKARH
PMPSLTPASTKVTAPLLLAAFAGLALLLFATVWLGNRTQIYATSFDQTQEIYMRATRTFRGLQDAETGQRGYLLTHDPAY
LQPYHDALSRMSEQRRLMNALIQDTPWESGLGAKLTPLIDAKLAELARTVDLAQAGRWDEALALVLAGSGKTTMDQARTV
LEDTLAELRSALQTQSEEMKTRSAYLFWAVTFGGLFILCVAGTAFWLIVRANSSLAQAQAQLRSLNESLESRVRGRTQEV
QRANEEIQRFAYIVSHDLRSPLVNVMGFTAELEAGLKDLQARHPIETGDGALSEDERDLRVTIFEDMPEAVGFIRSSTAK
MDGLINAILRLSREGRRTISPERLDMTALVESVVSTTTHSIQDTGSTVSVDKNLPEIVSDRLALSQIFANLIDNAIKYRL
PGRPCAVTITGRIDRGRALFQVADTGRGIEPKDHERIFDLFRRSGEQDQPGEGIGLAHVRTLVRRLGGEITVGSVPGQGT
TFHITLPFDVGPYLEIEPS

Sequences:

>Translated_579_residues
MTRQLLRDGTRGTRRWRERPLSPLPRAAPPAPPDAFGKRRFPGTRREGTAFGSGLQRGRGAPVPPPPRRPPIPPAAKARH
PMPSLTPASTKVTAPLLLAAFAGLALLLFATVWLGNRTQIYATSFDQTQEIYMRATRTFRGLQDAETGQRGYLLTHDPAY
LQPYHDALSRMSEQRRLMNALIQDTPWESGLGAKLTPLIDAKLAELARTVDLAQAGRWDEALALVLAGSGKTTMDQARTV
LEDTLAELRSALQTQSEEMKTRSAYLFWAVTFGGLFILCVAGTAFWLIVRANSSLAQAQAQLRSLNESLESRVRGRTQEV
QRANEEIQRFAYIVSHDLRSPLVNVMGFTAELEAGLKDLQARHPIETGDGALSEDERDLRVTIFEDMPEAVGFIRSSTAK
MDGLINAILRLSREGRRTISPERLDMTALVESVVSTTTHSIQDTGSTVSVDKNLPEIVSDRLALSQIFANLIDNAIKYRL
PGRPCAVTITGRIDRGRALFQVADTGRGIEPKDHERIFDLFRRSGEQDQPGEGIGLAHVRTLVRRLGGEITVGSVPGQGT
TFHITLPFDVGPYLEIEPS
>Mature_578_residues
TRQLLRDGTRGTRRWRERPLSPLPRAAPPAPPDAFGKRRFPGTRREGTAFGSGLQRGRGAPVPPPPRRPPIPPAAKARHP
MPSLTPASTKVTAPLLLAAFAGLALLLFATVWLGNRTQIYATSFDQTQEIYMRATRTFRGLQDAETGQRGYLLTHDPAYL
QPYHDALSRMSEQRRLMNALIQDTPWESGLGAKLTPLIDAKLAELARTVDLAQAGRWDEALALVLAGSGKTTMDQARTVL
EDTLAELRSALQTQSEEMKTRSAYLFWAVTFGGLFILCVAGTAFWLIVRANSSLAQAQAQLRSLNESLESRVRGRTQEVQ
RANEEIQRFAYIVSHDLRSPLVNVMGFTAELEAGLKDLQARHPIETGDGALSEDERDLRVTIFEDMPEAVGFIRSSTAKM
DGLINAILRLSREGRRTISPERLDMTALVESVVSTTTHSIQDTGSTVSVDKNLPEIVSDRLALSQIFANLIDNAIKYRLP
GRPCAVTITGRIDRGRALFQVADTGRGIEPKDHERIFDLFRRSGEQDQPGEGIGLAHVRTLVRRLGGEITVGSVPGQGTT
FHITLPFDVGPYLEIEPS

Specific function: Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region. Has also a slight blue shift

COG id: NA

COG function: NA

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1789149, Length=309, Percent_Identity=29.126213592233, Blast_Score=96, Evalue=4e-21,
Organism=Escherichia coli, GI1788713, Length=255, Percent_Identity=26.6666666666667, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI48994928, Length=264, Percent_Identity=28.7878787878788, Blast_Score=92, Evalue=9e-20,
Organism=Escherichia coli, GI1790861, Length=321, Percent_Identity=26.1682242990654, Blast_Score=79, Evalue=8e-16,
Organism=Escherichia coli, GI1786912, Length=249, Percent_Identity=26.9076305220884, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI145693157, Length=278, Percent_Identity=24.1007194244604, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI87082128, Length=188, Percent_Identity=26.063829787234, Blast_Score=66, Evalue=6e-12,
Organism=Escherichia coli, GI1788549, Length=260, Percent_Identity=25, Blast_Score=65, Evalue=2e-11,
Organism=Escherichia coli, GI87081816, Length=287, Percent_Identity=25.7839721254355, Blast_Score=63, Evalue=4e-11,
Organism=Escherichia coli, GI1786600, Length=246, Percent_Identity=27.2357723577236, Blast_Score=63, Evalue=7e-11,
Organism=Escherichia coli, GI1790346, Length=249, Percent_Identity=24.8995983935743, Blast_Score=62, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR003018
- InterPro:   IPR000014
- InterPro:   IPR013654
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515
- InterPro:   IPR003661
- InterPro:   IPR005467
- InterPro:   IPR009082 [H]

Pfam domain/function: PF01590 GAF; PF02518 HATPase_c; PF00512 HisKA; PF08446 PAS_2; PF00360 Phytochrome [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 63794; Mature: 63662

Theoretical pI: Translated: 9.79; Mature: 9.79

Prosite motif: PS50109 HIS_KIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRQLLRDGTRGTRRWRERPLSPLPRAAPPAPPDAFGKRRFPGTRREGTAFGSGLQRGRG
CCHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCC
APVPPPPRRPPIPPAAKARHPMPSLTPASTKVTAPLLLAAFAGLALLLFATVWLGNRTQI
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE
YATSFDQTQEIYMRATRTFRGLQDAETGQRGYLLTHDPAYLQPYHDALSRMSEQRRLMNA
EEECCCHHHHHHHHHHHHHCCCHHCCCCCCCEEEECCCHHHCHHHHHHHHHHHHHHHHHH
LIQDTPWESGLGAKLTPLIDAKLAELARTVDLAQAGRWDEALALVLAGSGKTTMDQARTV
HHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEEECCCCCHHHHHHHH
LEDTLAELRSALQTQSEEMKTRSAYLFWAVTFGGLFILCVAGTAFWLIVRANSSLAQAQA
HHHHHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHHHHHHHEEEEEECCCHHHHHHH
QLRSLNESLESRVRGRTQEVQRANEEIQRFAYIVSHDLRSPLVNVMGFTAELEAGLKDLQ
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ARHPIETGDGALSEDERDLRVTIFEDMPEAVGFIRSSTAKMDGLINAILRLSREGRRTIS
HCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
PERLDMTALVESVVSTTTHSIQDTGSTVSVDKNLPEIVSDRLALSQIFANLIDNAIKYRL
HHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHEECC
PGRPCAVTITGRIDRGRALFQVADTGRGIEPKDHERIFDLFRRSGEQDQPGEGIGLAHVR
CCCCEEEEEECCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHH
TLVRRLGGEITVGSVPGQGTTFHITLPFDVGPYLEIEPS
HHHHHHCCCEEEECCCCCCCEEEEEECCCCCCCEEECCC
>Mature Secondary Structure 
TRQLLRDGTRGTRRWRERPLSPLPRAAPPAPPDAFGKRRFPGTRREGTAFGSGLQRGRG
CHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCC
APVPPPPRRPPIPPAAKARHPMPSLTPASTKVTAPLLLAAFAGLALLLFATVWLGNRTQI
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE
YATSFDQTQEIYMRATRTFRGLQDAETGQRGYLLTHDPAYLQPYHDALSRMSEQRRLMNA
EEECCCHHHHHHHHHHHHHCCCHHCCCCCCCEEEECCCHHHCHHHHHHHHHHHHHHHHHH
LIQDTPWESGLGAKLTPLIDAKLAELARTVDLAQAGRWDEALALVLAGSGKTTMDQARTV
HHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEEECCCCCHHHHHHHH
LEDTLAELRSALQTQSEEMKTRSAYLFWAVTFGGLFILCVAGTAFWLIVRANSSLAQAQA
HHHHHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHHHHHHHEEEEEECCCHHHHHHH
QLRSLNESLESRVRGRTQEVQRANEEIQRFAYIVSHDLRSPLVNVMGFTAELEAGLKDLQ
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ARHPIETGDGALSEDERDLRVTIFEDMPEAVGFIRSSTAKMDGLINAILRLSREGRRTIS
HCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
PERLDMTALVESVVSTTTHSIQDTGSTVSVDKNLPEIVSDRLALSQIFANLIDNAIKYRL
HHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHEECC
PGRPCAVTITGRIDRGRALFQVADTGRGIEPKDHERIFDLFRRSGEQDQPGEGIGLAHVR
CCCCEEEEEECCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHH
TLVRRLGGEITVGSVPGQGTTFHITLPFDVGPYLEIEPS
HHHHHHCCCEEEECCCCCCCEEEEEECCCCCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 9109482; 9278513; 10828948 [H]