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The map label for this gene is ydgD [H]

Identifier: 83591901

GI number: 83591901

Start: 664670

End: 665590

Strand: Reverse

Name: ydgD [H]

Synonym: Rru_A0562

Alternate gene names: 83591901

Gene position: 665590-664670 (Counterclockwise)

Preceding gene: 83591902

Following gene: 83591898

Centisome position: 15.29

GC content: 72.42

Gene sequence:

>921_bases
CTGATCGCCCCCCTGGTCCGGCCGCTGCTTCTCGCCCTGGCTTTTGGCCTTATCGGCGGAGCGGCGGCGGCCCAATCGGC
GCGCGATCTGCCCGCCGAAAGCGACGCCGCCCTGCGCGCCCGCCTCAAGCCCGGCATCAAGGGCGCCGATGACCGCCGCG
CCGTCGACGCCTTTTCCTGGCCATGGTCGGCGATCGGGCGGGTCAACCGCTCCGACGGCGCCTTTTGCACCGGCAGCCTG
ATCGGCCGGGCCGAGGTTCTGACCGCCGCCCATTGCCTGTGGAACACGCGAACCGGGGCCTGGATGCCGGCCTCTGGGCT
GACCTTCGCCGCTGGCTACCAGCGCGGCGACTGGCGCTCGTTCTCCGCCGTCACCACGATCCGCCGCGCCCCCGGCTCGC
GCCCGGGCGAGACCACCGGCGACTGGGCGGTGCTCGGCCTGGAAACCCCGCTGGGCCTCAGCGAGGGCTGGCTGGGAACC
CAGGCGATCGCCGCCGCGCCCGCCGGACTGATCCAGGTGGGCTATGGCTTCGATCACCGCCATATCCAGACCGCCAATCT
TGGCTGCGCGCTGACCGGCGCCCTGGCCAATGGCACCGTGCTCCATGATTGCGACGTGGTTCAGGGCGATTCGGGCTCGC
CGATCCTGGCTTGGACGACCGCCGGACCGATGGTGGTGGCCCTGCATGTCTCGAGCGCCACCCTGGCCTCGGGCAAGGCG
GTGGGGCTGGCCGTGCCGATCGCCGCGATCACCGACAAGGCCTATCCCCCCGGTCGCGGCACCCGCCCGCTGGACGCCCT
CGCCGCCAAGACCCTGGAACGCCTTGTCGCCAGCTTGGCCGGGCAGCCCGTTCAGCCCGTCGACAGCACCCAGCGCAGAA
CCGCGGCAACCAGCCCCAAGGCGGCCAGCGATCCGCCGTAA

Upstream 100 bases:

>100_bases
CCCTGCGCGATGGCAAAGGGGTGATGGTCGATTGGCGCTATGTGGATGGCGGCTCCGTTCTGCCGCCGCCCGAAGTGGTC
AGCGCGTGGCGCCCCGCCGG

Downstream 100 bases:

>100_bases
AGGGCGACGAACCACAAAAGCCGCCGCCCGCGCCCGCCTTCGGGGGGCAAGGAGTTCCCGCTCAATGGCCGTACCCCTCG
TGTCCGGTCTTGCCGCGGAA

Product: peptidase S1 and S6, chymotrypsin/Hap

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 306; Mature: 306

Protein sequence:

>306_residues
MIAPLVRPLLLALAFGLIGGAAAAQSARDLPAESDAALRARLKPGIKGADDRRAVDAFSWPWSAIGRVNRSDGAFCTGSL
IGRAEVLTAAHCLWNTRTGAWMPASGLTFAAGYQRGDWRSFSAVTTIRRAPGSRPGETTGDWAVLGLETPLGLSEGWLGT
QAIAAAPAGLIQVGYGFDHRHIQTANLGCALTGALANGTVLHDCDVVQGDSGSPILAWTTAGPMVVALHVSSATLASGKA
VGLAVPIAAITDKAYPPGRGTRPLDALAAKTLERLVASLAGQPVQPVDSTQRRTAATSPKAASDPP

Sequences:

>Translated_306_residues
MIAPLVRPLLLALAFGLIGGAAAAQSARDLPAESDAALRARLKPGIKGADDRRAVDAFSWPWSAIGRVNRSDGAFCTGSL
IGRAEVLTAAHCLWNTRTGAWMPASGLTFAAGYQRGDWRSFSAVTTIRRAPGSRPGETTGDWAVLGLETPLGLSEGWLGT
QAIAAAPAGLIQVGYGFDHRHIQTANLGCALTGALANGTVLHDCDVVQGDSGSPILAWTTAGPMVVALHVSSATLASGKA
VGLAVPIAAITDKAYPPGRGTRPLDALAAKTLERLVASLAGQPVQPVDSTQRRTAATSPKAASDPP
>Mature_306_residues
MIAPLVRPLLLALAFGLIGGAAAAQSARDLPAESDAALRARLKPGIKGADDRRAVDAFSWPWSAIGRVNRSDGAFCTGSL
IGRAEVLTAAHCLWNTRTGAWMPASGLTFAAGYQRGDWRSFSAVTTIRRAPGSRPGETTGDWAVLGLETPLGLSEGWLGT
QAIAAAPAGLIQVGYGFDHRHIQTANLGCALTGALANGTVLHDCDVVQGDSGSPILAWTTAGPMVVALHVSSATLASGKA
VGLAVPIAAITDKAYPPGRGTRPLDALAAKTLERLVASLAGQPVQPVDSTQRRTAATSPKAASDPP

Specific function: Unknown

COG id: COG3591

COG function: function code E; V8-like Glu-specific endopeptidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S1B family [H]

Homologues:

Organism=Escherichia coli, GI1787882, Length=229, Percent_Identity=30.1310043668122, Blast_Score=71, Evalue=7e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009003
- InterPro:   IPR018114
- InterPro:   IPR001254
- InterPro:   IPR008256 [H]

Pfam domain/function: PF00089 Trypsin [H]

EC number: 3.4.21.- [C]

Molecular weight: Translated: 31366; Mature: 31366

Theoretical pI: Translated: 9.34; Mature: 9.34

Prosite motif: PS00134 TRYPSIN_HIS ; PS00135 TRYPSIN_SER ; PS50240 TRYPSIN_DOM

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIAPLVRPLLLALAFGLIGGAAAAQSARDLPAESDAALRARLKPGIKGADDRRAVDAFSW
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCCCCCHHHHCCCC
PWSAIGRVNRSDGAFCTGSLIGRAEVLTAAHCLWNTRTGAWMPASGLTFAAGYQRGDWRS
CHHHHCCCCCCCCCEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCC
FSAVTTIRRAPGSRPGETTGDWAVLGLETPLGLSEGWLGTQAIAAAPAGLIQVGYGFDHR
HHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHCCCCEEEECCCCCCC
HIQTANLGCALTGALANGTVLHDCDVVQGDSGSPILAWTTAGPMVVALHVSSATLASGKA
EEEECCCCEEEEECCCCCEEEECCCEEECCCCCEEEEEECCCCEEEEEEECCHHHCCCCE
VGLAVPIAAITDKAYPPGRGTRPLDALAAKTLERLVASLAGQPVQPVDSTQRRTAATSPK
EEEEEHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCC
AASDPP
CCCCCC
>Mature Secondary Structure
MIAPLVRPLLLALAFGLIGGAAAAQSARDLPAESDAALRARLKPGIKGADDRRAVDAFSW
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCCCCCHHHHCCCC
PWSAIGRVNRSDGAFCTGSLIGRAEVLTAAHCLWNTRTGAWMPASGLTFAAGYQRGDWRS
CHHHHCCCCCCCCCEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCC
FSAVTTIRRAPGSRPGETTGDWAVLGLETPLGLSEGWLGTQAIAAAPAGLIQVGYGFDHR
HHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHCCCCEEEECCCCCCC
HIQTANLGCALTGALANGTVLHDCDVVQGDSGSPILAWTTAGPMVVALHVSSATLASGKA
EEEECCCCEEEEECCCCCEEEECCCEEECCCCCEEEEEECCCCEEEEEEECCHHHCCCCE
VGLAVPIAAITDKAYPPGRGTRPLDALAAKTLERLVASLAGQPVQPVDSTQRRTAATSPK
EEEEEHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCC
AASDPP
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]