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The map label for this gene is yciR [C]

Identifier: 83591897

GI number: 83591897

Start: 659064

End: 661115

Strand: Reverse

Name: yciR [C]

Synonym: Rru_A0558

Alternate gene names: 83591897

Gene position: 661115-659064 (Counterclockwise)

Preceding gene: 83591898

Following gene: 83591895

Centisome position: 15.19

GC content: 65.79

Gene sequence:

>2052_bases
ATGTCCGCCAGCCCGCAAGCCCCCACCCCGCCCGATCGTTCGTCGCCCTCCGTCTCCTCGAACCTTGGGGCGGAGGGCGC
GGGCGGGCGTCGTCTATGCGGTTCGGTGGTCTTGTCGGCGGGGAAAATCCTCTCCGTCGATAAGACCCTCTGGCAAGCCC
TAGGGCTTTCGGCCGAGTCGCTCAGCGGCTTGCCCTTCCTCTCGTTCCTTGAGGACCCCTCGCGCGAGGTGTTGGCCGCG
CGCCTGCGTCTGGCCGGACCGCCCTGGGACCTGCGCACGGCGCTAAGGGTCGATGGCCGGGCCATTCCCGTCGTGCTACG
CGGCGACGGAGCGGCCGATAGAACGACGGATACCCCCCTTCAGGTGATCCTCATCACCCTCGCCCCCCAAGAGGGAGAGG
TCGAGCCCGTTTCCCAATCGGCGCTGTTTGACCATATCCCCCTGGGCGTGATGCTCAGCGATGGCCTTGGCCGGATCGCC
TATGCCAATCCGGCCTTCCTGGCCGAGGACATCGCCGCCGTGCGCGCCCTTCTGGGGGCGACTCCCCAGGCCCTGGCCAC
GGGATACCTTCATGAGGGACTGGCGCGCACCCTGTGGGAGGATTTGCTCTGCGGGCGGGTCTGGCGAAACGACGTGGACC
TGCCGACCGCGGACGGCCAGCGCACCCACAGCCGTCTGACCATCATCCCGCTGCGTCGCGATGACGGCGCGGTCGATCGC
CTGATGACGGTGATCGAACCCCGCTCGCCGGCGACCGACAGCCAAGCCTGGCAGCAGGTCAACCACGACACCCTGACCGG
CCTGCCCAACCGGGTTCTGTTCCAGGACCGTCTGCTCACCGCCCTGGCTTCGGCCCGCCGCCGCAACGATCAACTCGCCG
TGCTCTTTGTCGATCTCGACCATTTCAAGACGGTCAACGACTCGCTTGGCCATTCCTTCGGCGATCAGTTGCTTCAACAG
GTGGCCACGCGCTTGTCGCAGTGCCTGCGCGACAGCGACACCCTGGCGCGCATGGGCGGCGATGAATTCACCATCGCCCT
GACCGGCGACGGCCACCAGCGCGACTATGCGATGATCGCCAACCGCATCCTTGAAACCCTGCGCCGGCCCTTCACCCTGG
AGGGCGGGCACGAGGTGCTGATCGGCAGTTCGATCGGCATCACCCTTTTTCCCAATGACGCCGAAGACGTCGATACCTTG
TTGCGCAACGCTGATACGGCGATGTATCGGGCCAAGGCCTCGGGGCGGAACGCCTTTCAGTTCTTCACCGAGGAAATGAA
CCGGGAAATCCAAAGCCATCTCGACCTGGAAAACGCCCTGCGCCGGGCCGTGCGGGCGATGGATTTGACCATCCATTACC
AACCGGTGGTCGACAGCGCGACCCTGGCGGTGGTCTCGGCCGAAGCCCTGGTGCGCTGGCCCTTGGCCGACAAGGGGTTC
ATCCCGCCCTCGCGGTTCATTCCGGTGGCCGAGGAACTGGGGCTGATCGACGAGATCGGCGGCTGGGTGCTGTGGAACGC
CTGCACCCAGGCCAAGGTCTGGCAGGCTCAGGGGGCGAAGGCCTTTCGCGTTTCGGTCAATGTGTCCTGGCGCCAGTTGC
GCAATCCCGATTTCGCCCTGCGCGTCCGCGAGGCGCTAGAGGGAACCGGCCTTGGCGCGGCGTTCCTCGAGCTGGAAATC
ACCGAGGGGATGGTGCTGCGCGATCCCCAGGGCATCGCCCCGGCGCTGATGGCCTTATCCGAGATGGGGGTGGCCCTGGC
GATCGACAATTTCGGCTCGGGCCACAGCTCGATCAAATGCCTGCGCCAGTTTCCCTTTTCCATCCTCAAGCTCGACCGCT
CCTGCGTGGCCGATGTGCTGACCAGCCACGAGGATGCCGTTCTTGTGGAAACCGCCGCGATCATGGCCCGGCGCCTCGGC
CTAACCGTCGTAGCCGAAGGCGTGGAAACCCACGCGCAACTAGAATTTCTGCGCGAGCACTATTGCGATCTGATCCAGGG
TTATCTGTTCGGCCGGCCGCTGCCGCCCGAGGACTTCGCCCGTATGCTGTGA

Upstream 100 bases:

>100_bases
TTGCAGCGCATTTTAATTAAATTCCACCAATAAGGGATCGGCGCCGCCATAAAAGAGCGATAAGAGAATTTTTCATCGAC
CGGGGGCCGTGCCGTTAACC

Downstream 100 bases:

>100_bases
GCGGAGCCGGGCTCTCAGGCGCCGGCGCCCCGCGCCTTGCAGGCCTCCAGGGTATTGGCCAGCAAACAGGCGATGGTCAT
CGGCCCAACGCCGCCCGGCA

Product: diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 683; Mature: 682

Protein sequence:

>683_residues
MSASPQAPTPPDRSSPSVSSNLGAEGAGGRRLCGSVVLSAGKILSVDKTLWQALGLSAESLSGLPFLSFLEDPSREVLAA
RLRLAGPPWDLRTALRVDGRAIPVVLRGDGAADRTTDTPLQVILITLAPQEGEVEPVSQSALFDHIPLGVMLSDGLGRIA
YANPAFLAEDIAAVRALLGATPQALATGYLHEGLARTLWEDLLCGRVWRNDVDLPTADGQRTHSRLTIIPLRRDDGAVDR
LMTVIEPRSPATDSQAWQQVNHDTLTGLPNRVLFQDRLLTALASARRRNDQLAVLFVDLDHFKTVNDSLGHSFGDQLLQQ
VATRLSQCLRDSDTLARMGGDEFTIALTGDGHQRDYAMIANRILETLRRPFTLEGGHEVLIGSSIGITLFPNDAEDVDTL
LRNADTAMYRAKASGRNAFQFFTEEMNREIQSHLDLENALRRAVRAMDLTIHYQPVVDSATLAVVSAEALVRWPLADKGF
IPPSRFIPVAEELGLIDEIGGWVLWNACTQAKVWQAQGAKAFRVSVNVSWRQLRNPDFALRVREALEGTGLGAAFLELEI
TEGMVLRDPQGIAPALMALSEMGVALAIDNFGSGHSSIKCLRQFPFSILKLDRSCVADVLTSHEDAVLVETAAIMARRLG
LTVVAEGVETHAQLEFLREHYCDLIQGYLFGRPLPPEDFARML

Sequences:

>Translated_683_residues
MSASPQAPTPPDRSSPSVSSNLGAEGAGGRRLCGSVVLSAGKILSVDKTLWQALGLSAESLSGLPFLSFLEDPSREVLAA
RLRLAGPPWDLRTALRVDGRAIPVVLRGDGAADRTTDTPLQVILITLAPQEGEVEPVSQSALFDHIPLGVMLSDGLGRIA
YANPAFLAEDIAAVRALLGATPQALATGYLHEGLARTLWEDLLCGRVWRNDVDLPTADGQRTHSRLTIIPLRRDDGAVDR
LMTVIEPRSPATDSQAWQQVNHDTLTGLPNRVLFQDRLLTALASARRRNDQLAVLFVDLDHFKTVNDSLGHSFGDQLLQQ
VATRLSQCLRDSDTLARMGGDEFTIALTGDGHQRDYAMIANRILETLRRPFTLEGGHEVLIGSSIGITLFPNDAEDVDTL
LRNADTAMYRAKASGRNAFQFFTEEMNREIQSHLDLENALRRAVRAMDLTIHYQPVVDSATLAVVSAEALVRWPLADKGF
IPPSRFIPVAEELGLIDEIGGWVLWNACTQAKVWQAQGAKAFRVSVNVSWRQLRNPDFALRVREALEGTGLGAAFLELEI
TEGMVLRDPQGIAPALMALSEMGVALAIDNFGSGHSSIKCLRQFPFSILKLDRSCVADVLTSHEDAVLVETAAIMARRLG
LTVVAEGVETHAQLEFLREHYCDLIQGYLFGRPLPPEDFARML
>Mature_682_residues
SASPQAPTPPDRSSPSVSSNLGAEGAGGRRLCGSVVLSAGKILSVDKTLWQALGLSAESLSGLPFLSFLEDPSREVLAAR
LRLAGPPWDLRTALRVDGRAIPVVLRGDGAADRTTDTPLQVILITLAPQEGEVEPVSQSALFDHIPLGVMLSDGLGRIAY
ANPAFLAEDIAAVRALLGATPQALATGYLHEGLARTLWEDLLCGRVWRNDVDLPTADGQRTHSRLTIIPLRRDDGAVDRL
MTVIEPRSPATDSQAWQQVNHDTLTGLPNRVLFQDRLLTALASARRRNDQLAVLFVDLDHFKTVNDSLGHSFGDQLLQQV
ATRLSQCLRDSDTLARMGGDEFTIALTGDGHQRDYAMIANRILETLRRPFTLEGGHEVLIGSSIGITLFPNDAEDVDTLL
RNADTAMYRAKASGRNAFQFFTEEMNREIQSHLDLENALRRAVRAMDLTIHYQPVVDSATLAVVSAEALVRWPLADKGFI
PPSRFIPVAEELGLIDEIGGWVLWNACTQAKVWQAQGAKAFRVSVNVSWRQLRNPDFALRVREALEGTGLGAAFLELEIT
EGMVLRDPQGIAPALMALSEMGVALAIDNFGSGHSSIKCLRQFPFSILKLDRSCVADVLTSHEDAVLVETAAIMARRLGL
TVVAEGVETHAQLEFLREHYCDLIQGYLFGRPLPPEDFARML

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=421, Percent_Identity=38.7173396674584, Blast_Score=280, Evalue=2e-76,
Organism=Escherichia coli, GI87081921, Length=422, Percent_Identity=34.5971563981043, Blast_Score=243, Evalue=4e-65,
Organism=Escherichia coli, GI226510982, Length=418, Percent_Identity=27.7511961722488, Blast_Score=150, Evalue=2e-37,
Organism=Escherichia coli, GI1790496, Length=254, Percent_Identity=32.6771653543307, Blast_Score=147, Evalue=2e-36,
Organism=Escherichia coli, GI87081743, Length=261, Percent_Identity=32.183908045977, Blast_Score=132, Evalue=7e-32,
Organism=Escherichia coli, GI87081845, Length=250, Percent_Identity=30.8, Blast_Score=130, Evalue=3e-31,
Organism=Escherichia coli, GI1787055, Length=259, Percent_Identity=31.2741312741313, Blast_Score=127, Evalue=2e-30,
Organism=Escherichia coli, GI1788502, Length=242, Percent_Identity=32.2314049586777, Blast_Score=117, Evalue=2e-27,
Organism=Escherichia coli, GI1786507, Length=271, Percent_Identity=28.0442804428044, Blast_Score=109, Evalue=6e-25,
Organism=Escherichia coli, GI1788381, Length=483, Percent_Identity=26.0869565217391, Blast_Score=109, Evalue=7e-25,
Organism=Escherichia coli, GI87081980, Length=231, Percent_Identity=32.034632034632, Blast_Score=109, Evalue=7e-25,
Organism=Escherichia coli, GI1788849, Length=506, Percent_Identity=24.3083003952569, Blast_Score=100, Evalue=6e-22,
Organism=Escherichia coli, GI87081977, Length=150, Percent_Identity=36, Blast_Score=99, Evalue=9e-22,
Organism=Escherichia coli, GI1786584, Length=157, Percent_Identity=34.3949044585987, Blast_Score=95, Evalue=2e-20,
Organism=Escherichia coli, GI145693134, Length=161, Percent_Identity=35.4037267080745, Blast_Score=92, Evalue=8e-20,
Organism=Escherichia coli, GI87082096, Length=449, Percent_Identity=23.3853006681514, Blast_Score=92, Evalue=8e-20,
Organism=Escherichia coli, GI1787262, Length=160, Percent_Identity=36.875, Blast_Score=90, Evalue=4e-19,
Organism=Escherichia coli, GI1788956, Length=167, Percent_Identity=34.1317365269461, Blast_Score=87, Evalue=3e-18,
Organism=Escherichia coli, GI1787816, Length=167, Percent_Identity=34.7305389221557, Blast_Score=83, Evalue=7e-17,
Organism=Escherichia coli, GI87082007, Length=167, Percent_Identity=36.5269461077844, Blast_Score=82, Evalue=1e-16,
Organism=Escherichia coli, GI1787802, Length=168, Percent_Identity=32.1428571428571, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI87081881, Length=256, Percent_Identity=29.6875, Blast_Score=75, Evalue=2e-14,
Organism=Escherichia coli, GI1788085, Length=158, Percent_Identity=27.8481012658228, Blast_Score=62, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 74525; Mature: 74394

Theoretical pI: Translated: 5.08; Mature: 5.08

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSASPQAPTPPDRSSPSVSSNLGAEGAGGRRLCGSVVLSAGKILSVDKTLWQALGLSAES
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEHHHHHHHHHCCCHHH
LSGLPFLSFLEDPSREVLAARLRLAGPPWDLRTALRVDGRAIPVVLRGDGAADRTTDTPL
CCCCCHHHHHCCCHHHHHHHHHHCCCCCCCHHHHEEECCCEEEEEEECCCCCCCCCCCCE
QVILITLAPQEGEVEPVSQSALFDHIPLGVMLSDGLGRIAYANPAFLAEDIAAVRALLGA
EEEEEEECCCCCCCCCCHHHHHHHHCCCCEEECCCCCCEEECCHHHHHHHHHHHHHHHCC
TPQALATGYLHEGLARTLWEDLLCGRVWRNDVDLPTADGQRTHSRLTIIPLRRDDGAVDR
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEECCCCHHHH
LMTVIEPRSPATDSQAWQQVNHDTLTGLPNRVLFQDRLLTALASARRRNDQLAVLFVDLD
HHHHHCCCCCCCHHHHHHHCCCHHHCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECC
HFKTVNDSLGHSFGDQLLQQVATRLSQCLRDSDTLARMGGDEFTIALTGDGHQRDYAMIA
HHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCEEEEEEECCCCCHHHHHHH
NRILETLRRPFTLEGGHEVLIGSSIGITLFPNDAEDVDTLLRNADTAMYRAKASGRNAFQ
HHHHHHHCCCCEECCCCEEEEECCCEEEECCCCHHHHHHHHHCCCHHHHHHHCCCCHHHH
FFTEEMNREIQSHLDLENALRRAVRAMDLTIHYQPVVDSATLAVVSAEALVRWPLADKGF
HHHHHHHHHHHHHCCHHHHHHHHHHHHHEEEEEECCCCCHHHHHEEHHHHHCCCCCCCCC
IPPSRFIPVAEELGLIDEIGGWVLWNACTQAKVWQAQGAKAFRVSVNVSWRQLRNPDFAL
CCCCCCCCCHHHCCCHHHHCCEEEEHHHCCCHHHHCCCCEEEEEEEEEHHHHHCCCCHHH
RVREALEGTGLGAAFLELEITEGMVLRDPQGIAPALMALSEMGVALAIDNFGSGHSSIKC
HHHHHHCCCCCCEEEEEEEECCCEEEECCCCHHHHHHHHHHCCEEEEEECCCCCHHHHHH
LRQFPFSILKLDRSCVADVLTSHEDAVLVETAAIMARRLGLTVVAEGVETHAQLEFLREH
HHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCHHEEEHHHHHHHHHHHHHHH
YCDLIQGYLFGRPLPPEDFARML
HHHHHHHHHCCCCCCHHHHHHCC
>Mature Secondary Structure 
SASPQAPTPPDRSSPSVSSNLGAEGAGGRRLCGSVVLSAGKILSVDKTLWQALGLSAES
CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEHHHHHHHHHCCCHHH
LSGLPFLSFLEDPSREVLAARLRLAGPPWDLRTALRVDGRAIPVVLRGDGAADRTTDTPL
CCCCCHHHHHCCCHHHHHHHHHHCCCCCCCHHHHEEECCCEEEEEEECCCCCCCCCCCCE
QVILITLAPQEGEVEPVSQSALFDHIPLGVMLSDGLGRIAYANPAFLAEDIAAVRALLGA
EEEEEEECCCCCCCCCCHHHHHHHHCCCCEEECCCCCCEEECCHHHHHHHHHHHHHHHCC
TPQALATGYLHEGLARTLWEDLLCGRVWRNDVDLPTADGQRTHSRLTIIPLRRDDGAVDR
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEECCCCHHHH
LMTVIEPRSPATDSQAWQQVNHDTLTGLPNRVLFQDRLLTALASARRRNDQLAVLFVDLD
HHHHHCCCCCCCHHHHHHHCCCHHHCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECC
HFKTVNDSLGHSFGDQLLQQVATRLSQCLRDSDTLARMGGDEFTIALTGDGHQRDYAMIA
HHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCEEEEEEECCCCCHHHHHHH
NRILETLRRPFTLEGGHEVLIGSSIGITLFPNDAEDVDTLLRNADTAMYRAKASGRNAFQ
HHHHHHHCCCCEECCCCEEEEECCCEEEECCCCHHHHHHHHHCCCHHHHHHHCCCCHHHH
FFTEEMNREIQSHLDLENALRRAVRAMDLTIHYQPVVDSATLAVVSAEALVRWPLADKGF
HHHHHHHHHHHHHCCHHHHHHHHHHHHHEEEEEECCCCCHHHHHEEHHHHHCCCCCCCCC
IPPSRFIPVAEELGLIDEIGGWVLWNACTQAKVWQAQGAKAFRVSVNVSWRQLRNPDFAL
CCCCCCCCCHHHCCCHHHHCCEEEEHHHCCCHHHHCCCCEEEEEEEEEHHHHHCCCCHHH
RVREALEGTGLGAAFLELEITEGMVLRDPQGIAPALMALSEMGVALAIDNFGSGHSSIKC
HHHHHHCCCCCCEEEEEEEECCCEEEECCCCHHHHHHHHHHCCEEEEEECCCCCHHHHHH
LRQFPFSILKLDRSCVADVLTSHEDAVLVETAAIMARRLGLTVVAEGVETHAQLEFLREH
HHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCHHEEEHHHHHHHHHHHHHHH
YCDLIQGYLFGRPLPPEDFARML
HHHHHHHHHCCCCCCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]