Click here to switch to the map view.

The map label for this gene is crtB [H]

Identifier: 83591834

GI number: 83591834

Start: 580336

End: 581364

Strand: Direct

Name: crtB [H]

Synonym: Rru_A0494

Alternate gene names: 83591834

Gene position: 580336-581364 (Clockwise)

Preceding gene: 83591833

Following gene: 83591835

Centisome position: 13.33

GC content: 67.44

Gene sequence:

>1029_bases
TTGCTGGCGGCGAGCGCCGACGACTATGAGTATTGTCGCAAGCTTATCCGCACCGGCTCGCGGACGTTTCACGCCGCCTC
GCTGCTGTTGCCGGCGAAATTGCGCGATCCGGCCTATGCGCTTTACGCCTTTTGTCGGGTCTCCGACGACGCGGTGGACG
CTCCCGATGCCCATCGCAACGCCATCGCCGTTCTGACCGACCGCCTGGACCGCGCCTATGCCGGCCGGCCCTTGCCGCTG
CCTTGCGATCGCGCCTTCGCCGATACGGTGTCGCGGTTTTCGATTCCCCGCGCCCTGCCCGAAGCCCTGCTTGAAGGGAT
GGAATGGGATCTGGAAGGGCGGCAATGCCCAAGCCTGTCGGATCTGCAGGCCTATTCGGCCCGGGTGGCCGGCACGGTCG
GCGCCATGATGACGGTGCTGATGGGCGTGCGCGAGCCGGCGGTTCTGGCCCGCGCCTGCGATCTGGGCGTGGCCATGCAG
TTCACCAACATCGCCCGCGACGTCGGCGAGGACGCCCGCAACGGCCGGCTTTATCTGCCCCACGACTGGCTGCGCGAGGC
CGGCATCGATCCGGCGATCTGGTTGGCCGATCCGCGTTTCACCCCGGAACTGGCCGGGGTAGTGCGTCGCCTGCTCGACG
AGGCCGATCAGTTGTATCGGCGGGCGATCACCGGCATCAGCGGCCTGCCGGCAAGCTGTCGGCCGGCGATCCGCGCCGCG
TGCGATCTGTATGCCGAGATCGGCCGCGAGGTTGAACGCGCCAAATTCGACTCGATCTCGCGCCGCGCCGTCGTCCCCCC
GGTGCGCAAGGTCAGGGTGGTCGGCCGCTCGCTGGGTGGAACCTTGCTGGGGCGGACCCTTGATTACGCCCCGCCCTTGG
ACGAAACCCGGTTCCTGGTCGAAGCCTCGCTCCGCCAATGGGCCCCGGCCCGAAGCTCGCCGCTGGTTCCCTGGTGGCAC
TTCGGCGAACGCTGGACCTGGGTGATCGATCTTTTGATCGCCCTTGAAAGTCGTCATCAGCGTTTGTGA

Upstream 100 bases:

>100_bases
GGGGCCGGAACCCATCCCGGAGCCGGCCTGCCCGGCGTCCTGTCTTCGGCAAAAATCCTCGATACGGTGGTGCCCGATGC
CTCGGTCCTGGTCTAATTCG

Downstream 100 bases:

>100_bases
AGACTTTTGGCGCCCGCTTATTGTGAAATTTGGTCTAGAGCAAAATCTATCAGAGAGAGCCGTGATGGCGCGGGATGCGA
TCGTATCCCCGGACGTGGTG

Product: phytoene synthase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 342; Mature: 342

Protein sequence:

>342_residues
MLAASADDYEYCRKLIRTGSRTFHAASLLLPAKLRDPAYALYAFCRVSDDAVDAPDAHRNAIAVLTDRLDRAYAGRPLPL
PCDRAFADTVSRFSIPRALPEALLEGMEWDLEGRQCPSLSDLQAYSARVAGTVGAMMTVLMGVREPAVLARACDLGVAMQ
FTNIARDVGEDARNGRLYLPHDWLREAGIDPAIWLADPRFTPELAGVVRRLLDEADQLYRRAITGISGLPASCRPAIRAA
CDLYAEIGREVERAKFDSISRRAVVPPVRKVRVVGRSLGGTLLGRTLDYAPPLDETRFLVEASLRQWAPARSSPLVPWWH
FGERWTWVIDLLIALESRHQRL

Sequences:

>Translated_342_residues
MLAASADDYEYCRKLIRTGSRTFHAASLLLPAKLRDPAYALYAFCRVSDDAVDAPDAHRNAIAVLTDRLDRAYAGRPLPL
PCDRAFADTVSRFSIPRALPEALLEGMEWDLEGRQCPSLSDLQAYSARVAGTVGAMMTVLMGVREPAVLARACDLGVAMQ
FTNIARDVGEDARNGRLYLPHDWLREAGIDPAIWLADPRFTPELAGVVRRLLDEADQLYRRAITGISGLPASCRPAIRAA
CDLYAEIGREVERAKFDSISRRAVVPPVRKVRVVGRSLGGTLLGRTLDYAPPLDETRFLVEASLRQWAPARSSPLVPWWH
FGERWTWVIDLLIALESRHQRL
>Mature_342_residues
MLAASADDYEYCRKLIRTGSRTFHAASLLLPAKLRDPAYALYAFCRVSDDAVDAPDAHRNAIAVLTDRLDRAYAGRPLPL
PCDRAFADTVSRFSIPRALPEALLEGMEWDLEGRQCPSLSDLQAYSARVAGTVGAMMTVLMGVREPAVLARACDLGVAMQ
FTNIARDVGEDARNGRLYLPHDWLREAGIDPAIWLADPRFTPELAGVVRRLLDEADQLYRRAITGISGLPASCRPAIRAA
CDLYAEIGREVERAKFDSISRRAVVPPVRKVRVVGRSLGGTLLGRTLDYAPPLDETRFLVEASLRQWAPARSSPLVPWWH
FGERWTWVIDLLIALESRHQRL

Specific function: Catalyzes the reaction from prephytoene diphosphate to phytoene [H]

COG id: COG1562

COG function: function code I; Phytoene/squalene synthetase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phytoene/squalene synthase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002060
- InterPro:   IPR019845
- InterPro:   IPR008949 [H]

Pfam domain/function: PF00494 SQS_PSY [H]

EC number: =2.5.1.32 [H]

Molecular weight: Translated: 38046; Mature: 38046

Theoretical pI: Translated: 8.05; Mature: 8.05

Prosite motif: PS01044 SQUALEN_PHYTOEN_SYN_1 ; PS01045 SQUALEN_PHYTOEN_SYN_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLAASADDYEYCRKLIRTGSRTFHAASLLLPAKLRDPAYALYAFCRVSDDAVDAPDAHRN
CCCCCCCCHHHHHHHHHCCCCHHHHHHHHCCHHHCCHHHHHHHHHHCCCCCCCCCCCHHH
AIAVLTDRLDRAYAGRPLPLPCDRAFADTVSRFSIPRALPEALLEGMEWDLEGRQCPSLS
HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCHH
DLQAYSARVAGTVGAMMTVLMGVREPAVLARACDLGVAMQFTNIARDVGEDARNGRLYLP
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCEEECC
HDWLREAGIDPAIWLADPRFTPELAGVVRRLLDEADQLYRRAITGISGLPASCRPAIRAA
HHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH
CDLYAEIGREVERAKFDSISRRAVVPPVRKVRVVGRSLGGTLLGRTLDYAPPLDETRFLV
HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH
EASLRQWAPARSSPLVPWWHFGERWTWVIDLLIALESRHQRL
HHHHHHCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLAASADDYEYCRKLIRTGSRTFHAASLLLPAKLRDPAYALYAFCRVSDDAVDAPDAHRN
CCCCCCCCHHHHHHHHHCCCCHHHHHHHHCCHHHCCHHHHHHHHHHCCCCCCCCCCCHHH
AIAVLTDRLDRAYAGRPLPLPCDRAFADTVSRFSIPRALPEALLEGMEWDLEGRQCPSLS
HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCHH
DLQAYSARVAGTVGAMMTVLMGVREPAVLARACDLGVAMQFTNIARDVGEDARNGRLYLP
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCEEECC
HDWLREAGIDPAIWLADPRFTPELAGVVRRLLDEADQLYRRAITGISGLPASCRPAIRAA
HHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH
CDLYAEIGREVERAKFDSISRRAVVPPVRKVRVVGRSLGGTLLGRTLDYAPPLDETRFLV
HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH
EASLRQWAPARSSPLVPWWHFGERWTWVIDLLIALESRHQRL
HHHHHHCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2747617 [H]