Click here to switch to the map view.

The map label for this gene is oxyR [H]

Identifier: 83591674

GI number: 83591674

Start: 405956

End: 406918

Strand: Direct

Name: oxyR [H]

Synonym: Rru_A0334

Alternate gene names: 83591674

Gene position: 405956-406918 (Clockwise)

Preceding gene: 83591672

Following gene: 83591675

Centisome position: 9.33

GC content: 67.29

Gene sequence:

>963_bases
ATGAAAAATCTTCCGACCCTCAGACAGCTCCGCTATCTGGTGACGGTCAGCGAAACCCGGCATTTCGGCAGGGCGGCCGA
GATCTGCGCCGTAACCCAATCCACCCTCTCGGCGGGGGTTCAGGAGCTTGAGGGTCTGCTGGGCACCCGGCTGATCGAAC
GGCGCAGCCGGCGTCAGGTGGTGTTCACGCCATTGGGCGAGGAAATCGTCGAGCGCGCCCGCGCCGTTCTGGCCGATGCC
GAGGCTCTGGTCGATGCCGCCCAGGCCGGATCCCTGCCTTTGGTCGGAGACCTTCATTTGGGGGTGATTCCGACCATCGG
TCCTTATGTGTTGCCGCGTCTGGTTCCCGCCCTGCGCGAAGCCTATGGCGGCTTGCGGCTGTTCCTGCGCGAGGAGCAAT
CGGCCAACCTGCTCAGCCTGCTCAACGCCGGGCGGATCGACGCGGCGCTGATGGCCTTGCCCTATGCGGTGGGCGATCTG
CCGCGCGTTGAACTGGCGACCGAAGAGGTGGTTCTGGCGATGCCGGAAAACCACCCCTTGGCGGCCTTTGATGACATCGC
GGTGGAAAAGCTCGAGTCCGAGACCATGCTGATGCTCGAAGACGGCCATTGCCTGCGTGAGCATGCGATGGAGGCCTGCC
ACCTGACGCGTTCGCGCGGCAACGAGGCCTTTCAGGCGACCAGCCTGTCGACCCTGGTGCAGATGGTCGCCGGCGGCGTG
GGCGTCACCTTGATGCCCAGCATCGCCGTGCCGGTGGAGGCCCGCCCGGGATCGGGCGTGGTGGTGCGGCCGATCACCGG
GGCGCGGGCGGCGCGCACCCTGGCCCTGCTGTGGCGGCCGGCCTCGCCGCGCTCGCGCGATTACCGCCTGCTCGCCGATG
CCATCGGCACGGCGATCACCGGCGCCCTCAGTGATGCCGGTCGGCAATTGGCCGGTCAAAGGAAGGAGGCAAAGGAGGCG
TAG

Upstream 100 bases:

>100_bases
GCCGGACGGCCCGTGGAGCGTTGTACCAACACCAAGACTATGGCTTTCTGCGGCCAATCATTCTAATTGGATGTTTCGCT
ACTTCTGATCGGAAAATGCC

Downstream 100 bases:

>100_bases
GCTGCGGAAAGCCAAGCCGACGGGGGAGGGGGGCTTGCGCCGCCTTGTTGATCGGTGATTGATCGGCGGCGGCGATGGGG
GCAAAGTTGATCGGGCCCGA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 320; Mature: 320

Protein sequence:

>320_residues
MKNLPTLRQLRYLVTVSETRHFGRAAEICAVTQSTLSAGVQELEGLLGTRLIERRSRRQVVFTPLGEEIVERARAVLADA
EALVDAAQAGSLPLVGDLHLGVIPTIGPYVLPRLVPALREAYGGLRLFLREEQSANLLSLLNAGRIDAALMALPYAVGDL
PRVELATEEVVLAMPENHPLAAFDDIAVEKLESETMLMLEDGHCLREHAMEACHLTRSRGNEAFQATSLSTLVQMVAGGV
GVTLMPSIAVPVEARPGSGVVVRPITGARAARTLALLWRPASPRSRDYRLLADAIGTAITGALSDAGRQLAGQRKEAKEA

Sequences:

>Translated_320_residues
MKNLPTLRQLRYLVTVSETRHFGRAAEICAVTQSTLSAGVQELEGLLGTRLIERRSRRQVVFTPLGEEIVERARAVLADA
EALVDAAQAGSLPLVGDLHLGVIPTIGPYVLPRLVPALREAYGGLRLFLREEQSANLLSLLNAGRIDAALMALPYAVGDL
PRVELATEEVVLAMPENHPLAAFDDIAVEKLESETMLMLEDGHCLREHAMEACHLTRSRGNEAFQATSLSTLVQMVAGGV
GVTLMPSIAVPVEARPGSGVVVRPITGARAARTLALLWRPASPRSRDYRLLADAIGTAITGALSDAGRQLAGQRKEAKEA
>Mature_320_residues
MKNLPTLRQLRYLVTVSETRHFGRAAEICAVTQSTLSAGVQELEGLLGTRLIERRSRRQVVFTPLGEEIVERARAVLADA
EALVDAAQAGSLPLVGDLHLGVIPTIGPYVLPRLVPALREAYGGLRLFLREEQSANLLSLLNAGRIDAALMALPYAVGDL
PRVELATEEVVLAMPENHPLAAFDDIAVEKLESETMLMLEDGHCLREHAMEACHLTRSRGNEAFQATSLSTLVQMVAGGV
GVTLMPSIAVPVEARPGSGVVVRPITGARAARTLALLWRPASPRSRDYRLLADAIGTAITGALSDAGRQLAGQRKEAKEA

Specific function: Required for the induction of a regulon of hydrogen peroxide inducible genes such as catalase and glutathione- reductase [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790399, Length=304, Percent_Identity=41.1184210526316, Blast_Score=226, Evalue=2e-60,
Organism=Escherichia coli, GI1788887, Length=298, Percent_Identity=27.5167785234899, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1788748, Length=262, Percent_Identity=26.7175572519084, Blast_Score=89, Evalue=5e-19,
Organism=Escherichia coli, GI1787879, Length=300, Percent_Identity=28, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI2367136, Length=264, Percent_Identity=28.7878787878788, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI157672245, Length=244, Percent_Identity=26.6393442622951, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI1787530, Length=252, Percent_Identity=25.7936507936508, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI145693105, Length=273, Percent_Identity=22.3443223443223, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1788297, Length=245, Percent_Identity=26.1224489795918, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1790208, Length=255, Percent_Identity=28.6274509803922, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34340; Mature: 34340

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNLPTLRQLRYLVTVSETRHFGRAAEICAVTQSTLSAGVQELEGLLGTRLIERRSRRQV
CCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEE
VFTPLGEEIVERARAVLADAEALVDAAQAGSLPLVGDLHLGVIPTIGPYVLPRLVPALRE
EECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHH
AYGGLRLFLREEQSANLLSLLNAGRIDAALMALPYAVGDLPRVELATEEVVLAMPENHPL
HHCCCEEEEECCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCCEEECCCEEEEECCCCCCC
AAFDDIAVEKLESETMLMLEDGHCLREHAMEACHLTRSRGNEAFQATSLSTLVQMVAGGV
CHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
GVTLMPSIAVPVEARPGSGVVVRPITGARAARTLALLWRPASPRSRDYRLLADAIGTAIT
CEEECCCEECCEECCCCCCEEEECCCCHHHHHHHHHEECCCCCCCCCHHHHHHHHHHHHH
GALSDAGRQLAGQRKEAKEA
HHHHHHHHHHHCCHHHHCCC
>Mature Secondary Structure
MKNLPTLRQLRYLVTVSETRHFGRAAEICAVTQSTLSAGVQELEGLLGTRLIERRSRRQV
CCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEE
VFTPLGEEIVERARAVLADAEALVDAAQAGSLPLVGDLHLGVIPTIGPYVLPRLVPALRE
EECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHH
AYGGLRLFLREEQSANLLSLLNAGRIDAALMALPYAVGDLPRVELATEEVVLAMPENHPL
HHCCCEEEEECCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCCEEECCCEEEEECCCCCCC
AAFDDIAVEKLESETMLMLEDGHCLREHAMEACHLTRSRGNEAFQATSLSTLVQMVAGGV
CHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
GVTLMPSIAVPVEARPGSGVVVRPITGARAARTLALLWRPASPRSRDYRLLADAIGTAIT
CEEECCCEECCEECCCCCCEEEECCCCHHHHHHHHHEECCCCCCCCCHHHHHHHHHHHHH
GALSDAGRQLAGQRKEAKEA
HHHHHHHHHHHCCHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA