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The map label for this gene is ydeD [C]

Identifier: 83591476

GI number: 83591476

Start: 159420

End: 160346

Strand: Direct

Name: ydeD [C]

Synonym: Rru_A0136

Alternate gene names: 83591476

Gene position: 159420-160346 (Clockwise)

Preceding gene: 83591475

Following gene: 83591477

Centisome position: 3.66

GC content: 68.61

Gene sequence:

>927_bases
ATGACCGCCGCTCCCTCGCCTTCGGCGTCGCTTTCGCTGCGCGTCGCCCCCGCCGTCTTCGTTCTGTTGTGGAGCACTGG
CTTTATCGGCGCCCGGCTGGTCTTGCCGCACGCCGAACCGCTGACGGTGCTCTGCCTGCGCTTCGCCGCCACCGTGGCCC
TGCTTGGGCCGCTCTGTCTGGTTCTGAAGGCGCGCTGGCCGACCTCGCCGCATCAGCTCTTGCATGTGGCGGTGGCCGGG
ATCCTGGTTCACGCCCTGTATCTGGGCGGGGTTTTCGCCGCGATTTCCCTGGGGATGCCCGCCGGCTTGACCGCCCTGGT
CGTCGGGATTCAGCCGCTGCTGACCGCCGCCCTGGCCGGGCCGGTTCTTGGCGAGAAAACGACGGCGCGTCAGGGCCTGG
GGCTGGTGCTCGGTCTGGCCGGGGTGGCCGCCGTTCTGGGCGACAAGCTGGCGCCCCAGGCCGGAACCCTGTTCGACGGC
TTCGGCGCGGCGGCGATGATCTGCGCCCTGGCCGCGCTGTGCGGCATCACCTTTGGCACGCTTTATCAAAAGCGCTTCTG
CCAGGGGGTGGATCTGACCAGCGGATCGCTGATCCAGTTCATCGTGTCGGGGGTGGTTCTGCTGCCCTTCGCCTATACCT
TCGAAACCATGCGCGTCGACTGGACGGCTGAATTCATCTTCGGTCTGGCTTGGCTGGTGGTCGGGCTGTCGGTGGGGGCG
GTCACCTTGCTGCTGGCGATGATCCGCCATGGCGCCGCCGGTCGGGTGGCCAGCCTGTTCTATCTGGTGCCGCCGACGAC
GGCCTTGATGGCCTGGGGGCTGTTTGACGAGCGTCTCGGTCCCCTGGCCCTGGCCGGGATGGCGGTGACGGTGGCCGGAG
TTGCCCTGGTGGTGGCGCCGCGACGCCAGACCTTGGCCCAACGGTGA

Upstream 100 bases:

>100_bases
TGGACGGCGCCCGAACCTTGCGATAGTCAGGATGAGGGGGGCGCGGCCTGCGGGCCGGTCTTGCCGACTCCCGTGGTTCC
CTCGTTCGCCGGGATTTTCG

Downstream 100 bases:

>100_bases
GGCCAAGGCGCCATTTCCCGGCGTGTGATGGTTGTTTCAAGGGGCTTTCCTTCCGAAATACTGTCTAGTTCGGTCGACGG
CGGCGCGCGAAAGGCGCCCT

Product: hypothetical protein

Products: NA

Alternate protein names: DMT Family Permease; Transmembrane Protein; Permease Of Drug/Metabolite Transporter Superfamily; Permease; Integral Membrane; Permease DMT Superfamily; Drug/Metabolite Transporter Superfamily Permease; Transporter Of DMT Superfamily; Permeases Of Drug/Metabolite Transporter

Number of amino acids: Translated: 308; Mature: 307

Protein sequence:

>308_residues
MTAAPSPSASLSLRVAPAVFVLLWSTGFIGARLVLPHAEPLTVLCLRFAATVALLGPLCLVLKARWPTSPHQLLHVAVAG
ILVHALYLGGVFAAISLGMPAGLTALVVGIQPLLTAALAGPVLGEKTTARQGLGLVLGLAGVAAVLGDKLAPQAGTLFDG
FGAAAMICALAALCGITFGTLYQKRFCQGVDLTSGSLIQFIVSGVVLLPFAYTFETMRVDWTAEFIFGLAWLVVGLSVGA
VTLLLAMIRHGAAGRVASLFYLVPPTTALMAWGLFDERLGPLALAGMAVTVAGVALVVAPRRQTLAQR

Sequences:

>Translated_308_residues
MTAAPSPSASLSLRVAPAVFVLLWSTGFIGARLVLPHAEPLTVLCLRFAATVALLGPLCLVLKARWPTSPHQLLHVAVAG
ILVHALYLGGVFAAISLGMPAGLTALVVGIQPLLTAALAGPVLGEKTTARQGLGLVLGLAGVAAVLGDKLAPQAGTLFDG
FGAAAMICALAALCGITFGTLYQKRFCQGVDLTSGSLIQFIVSGVVLLPFAYTFETMRVDWTAEFIFGLAWLVVGLSVGA
VTLLLAMIRHGAAGRVASLFYLVPPTTALMAWGLFDERLGPLALAGMAVTVAGVALVVAPRRQTLAQR
>Mature_307_residues
TAAPSPSASLSLRVAPAVFVLLWSTGFIGARLVLPHAEPLTVLCLRFAATVALLGPLCLVLKARWPTSPHQLLHVAVAGI
LVHALYLGGVFAAISLGMPAGLTALVVGIQPLLTAALAGPVLGEKTTARQGLGLVLGLAGVAAVLGDKLAPQAGTLFDGF
GAAAMICALAALCGITFGTLYQKRFCQGVDLTSGSLIQFIVSGVVLLPFAYTFETMRVDWTAEFIFGLAWLVVGLSVGAV
TLLLAMIRHGAAGRVASLFYLVPPTTALMAWGLFDERLGPLALAGMAVTVAGVALVVAPRRQTLAQR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31729; Mature: 31598

Theoretical pI: Translated: 9.67; Mature: 9.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAAPSPSASLSLRVAPAVFVLLWSTGFIGARLVLPHAEPLTVLCLRFAATVALLGPLCL
CCCCCCCCCCEEEEHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHH
VLKARWPTSPHQLLHVAVAGILVHALYLGGVFAAISLGMPAGLTALVVGIQPLLTAALAG
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHC
PVLGEKTTARQGLGLVLGLAGVAAVLGDKLAPQAGTLFDGFGAAAMICALAALCGITFGT
CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LYQKRFCQGVDLTSGSLIQFIVSGVVLLPFAYTFETMRVDWTAEFIFGLAWLVVGLSVGA
HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHHHHHHHHHHH
VTLLLAMIRHGAAGRVASLFYLVPPTTALMAWGLFDERLGPLALAGMAVTVAGVALVVAP
HHHHHHHHHCCCCCCHHHHEEECCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCC
RRQTLAQR
CHHHHCCC
>Mature Secondary Structure 
TAAPSPSASLSLRVAPAVFVLLWSTGFIGARLVLPHAEPLTVLCLRFAATVALLGPLCL
CCCCCCCCCEEEEHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHH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CHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA