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The map label for this gene is recF [H]

Identifier: 83591343

GI number: 83591343

Start: 3170

End: 4297

Strand: Direct

Name: recF [H]

Synonym: Rru_A0003

Alternate gene names: 83591343

Gene position: 3170-4297 (Clockwise)

Preceding gene: 83591342

Following gene: 83591344

Centisome position: 0.07

GC content: 74.82

Gene sequence:

>1128_bases
GTGGTCGAGCGGCTGACCCTGACCGCCTTTCGCTGCTACGACCGGCTGCGCCTGGATGTCGGACCCCGGCCCCTGGTGCT
GACCGGTCCCAATGGCGCGGGCAAGACCAATCTGCTGGAAGCCCTGTCGTTTCTCGCCCCGGGGCGCGGCTTGCGACGGG
CGGCTCTGGCCGATCCCTGCCGCCGGGTCGGGGGCGACGCCGCGACGGCGGGCCCGCCCTGGGCGGTGGCCGCCCATCTG
CGGTTGCCGGCGGGGCCGGGAACCCTGGGGCGCGGCGTCGATGTCGGCACCGGCCTTGAGCGGGCGACGGCGGGCGAGCG
CCGTCTGGTGCGCATCGATGGGGCGACGGCCGGTCAGGCGGCGCTGGGCGATCTGTTCTCGGTGCTGTGGCTGACCCCGG
AAATGGACGGGTTGTTTCGCGGCGGGGCGAGCGAGCGCCGGCGCTTTCTTGACCGTCTGGTCAATGGCCTTGATCCCGAT
CACGCCGGACGCACCGCCGCTTACGCCCAGGCCCAGCGCGAACGCGCCCGCCTGCTGCGCGAGGGACGGGCGTCGCGCGG
CTGGCTGGACGGGCTGGAAGACGTGATGGCCCGCCATGGCGTGGCGATCGTCGCGGCGCGCCGCGATCTGGTCGACCGCC
TGGGGGCGGCGGTGCGCGCCGCCACCGGGCCGTTTCCCGGGGCGCGGATCGATCTGGTCTCCGAGGTCGACGGCTGGCTG
GCCGCCGGCCCGGCCCTGGCCGCCGAAGACCGCCTGCGCGCCGCCCTGGCCATGGCGCGCGGACCCGAGGCGCCGGCCCC
GGGACCGCACCGCGATGATCTGGCGGTGCGCCACGGCCCCAAGGACATTCCCGCCGTCCAGGCCTCGACCGGCGAGCAGA
AGGCGGTGCTGATCGCCCTGATCCTGGCCCAGGCCCGGGTCCAGGAGGCCGCCCGCGCCGTGGCGCCGCTGCTGTTGCTC
GACGAGGGCGTGGCCCATCTCGATGCGCCGCGCCGCGCCGCCCTGGGCGAGGCCCTGAGCGGCCAGGGACTTCAGGCCTG
GGTCTCGGGAACGGAGGCGCAAGCTTTTGACTCCTGGGCCAAAAACGCTCAATTCCTGCGCATCGCCGAGGGGGCCGTGC
TAGACTAG

Upstream 100 bases:

>100_bases
ACGCCTCGGCCGTCTATGTGCTGATGCCGATGCGGGTGTGACGACGCCGCCCCTTTCCGCCGCGTCCGACCGGCCGCCCC
CTGGAGGGCCAAGGGGCGTC

Downstream 100 bases:

>100_bases
CAAAGCCCCCGTTGCCGGCTTTCGGGCCGGACCTTTCCACGTAGACAACAAGAAGACCGCTCCCATGACCCAGCAGGCCT
ATACATCCGAATCCATCAAG

Product: recombination protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 375; Mature: 375

Protein sequence:

>375_residues
MVERLTLTAFRCYDRLRLDVGPRPLVLTGPNGAGKTNLLEALSFLAPGRGLRRAALADPCRRVGGDAATAGPPWAVAAHL
RLPAGPGTLGRGVDVGTGLERATAGERRLVRIDGATAGQAALGDLFSVLWLTPEMDGLFRGGASERRRFLDRLVNGLDPD
HAGRTAAYAQAQRERARLLREGRASRGWLDGLEDVMARHGVAIVAARRDLVDRLGAAVRAATGPFPGARIDLVSEVDGWL
AAGPALAAEDRLRAALAMARGPEAPAPGPHRDDLAVRHGPKDIPAVQASTGEQKAVLIALILAQARVQEAARAVAPLLLL
DEGVAHLDAPRRAALGEALSGQGLQAWVSGTEAQAFDSWAKNAQFLRIAEGAVLD

Sequences:

>Translated_375_residues
MVERLTLTAFRCYDRLRLDVGPRPLVLTGPNGAGKTNLLEALSFLAPGRGLRRAALADPCRRVGGDAATAGPPWAVAAHL
RLPAGPGTLGRGVDVGTGLERATAGERRLVRIDGATAGQAALGDLFSVLWLTPEMDGLFRGGASERRRFLDRLVNGLDPD
HAGRTAAYAQAQRERARLLREGRASRGWLDGLEDVMARHGVAIVAARRDLVDRLGAAVRAATGPFPGARIDLVSEVDGWL
AAGPALAAEDRLRAALAMARGPEAPAPGPHRDDLAVRHGPKDIPAVQASTGEQKAVLIALILAQARVQEAARAVAPLLLL
DEGVAHLDAPRRAALGEALSGQGLQAWVSGTEAQAFDSWAKNAQFLRIAEGAVLD
>Mature_375_residues
MVERLTLTAFRCYDRLRLDVGPRPLVLTGPNGAGKTNLLEALSFLAPGRGLRRAALADPCRRVGGDAATAGPPWAVAAHL
RLPAGPGTLGRGVDVGTGLERATAGERRLVRIDGATAGQAALGDLFSVLWLTPEMDGLFRGGASERRRFLDRLVNGLDPD
HAGRTAAYAQAQRERARLLREGRASRGWLDGLEDVMARHGVAIVAARRDLVDRLGAAVRAATGPFPGARIDLVSEVDGWL
AAGPALAAEDRLRAALAMARGPEAPAPGPHRDDLAVRHGPKDIPAVQASTGEQKAVLIALILAQARVQEAARAVAPLLLL
DEGVAHLDAPRRAALGEALSGQGLQAWVSGTEAQAFDSWAKNAQFLRIAEGAVLD

Specific function: The recF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP [H]

COG id: COG1195

COG function: function code L; Recombinational DNA repair ATPase (RecF pathway)

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recF family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR001238
- InterPro:   IPR018078
- InterPro:   IPR003395
- InterPro:   IPR007406 [H]

Pfam domain/function: PF02463 SMC_N [H]

EC number: NA

Molecular weight: Translated: 39409; Mature: 39409

Theoretical pI: Translated: 10.18; Mature: 10.18

Prosite motif: PS00617 RECF_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVERLTLTAFRCYDRLRLDVGPRPLVLTGPNGAGKTNLLEALSFLAPGRGLRRAALADPC
CCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHH
RRVGGDAATAGPPWAVAAHLRLPAGPGTLGRGVDVGTGLERATAGERRLVRIDGATAGQA
HHHCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCHHHCCCCCEEEEECCCCCCHH
ALGDLFSVLWLTPEMDGLFRGGASERRRFLDRLVNGLDPDHAGRTAAYAQAQRERARLLR
HHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
EGRASRGWLDGLEDVMARHGVAIVAARRDLVDRLGAAVRAATGPFPGARIDLVSEVDGWL
HCCCCCCHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHHHCCCCCCCCCEEHHHHHCHHH
AAGPALAAEDRLRAALAMARGPEAPAPGPHRDDLAVRHGPKDIPAVQASTGEQKAVLIAL
HCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
ILAQARVQEAARAVAPLLLLDEGVAHLDAPRRAALGEALSGQGLQAWVSGTEAQAFDSWA
HHHHHHHHHHHHHHHHHHHHHCCHHHCCCCHHHHHHHHHCCCCHHHHHCCCHHHHHHHHH
KNAQFLRIAEGAVLD
CCCCEEEECCCCCCC
>Mature Secondary Structure
MVERLTLTAFRCYDRLRLDVGPRPLVLTGPNGAGKTNLLEALSFLAPGRGLRRAALADPC
CCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHH
RRVGGDAATAGPPWAVAAHLRLPAGPGTLGRGVDVGTGLERATAGERRLVRIDGATAGQA
HHHCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCHHHCCCCCEEEEECCCCCCHH
ALGDLFSVLWLTPEMDGLFRGGASERRRFLDRLVNGLDPDHAGRTAAYAQAQRERARLLR
HHHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
EGRASRGWLDGLEDVMARHGVAIVAARRDLVDRLGAAVRAATGPFPGARIDLVSEVDGWL
HCCCCCCHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHHHCCCCCCCCCEEHHHHHCHHH
AAGPALAAEDRLRAALAMARGPEAPAPGPHRDDLAVRHGPKDIPAVQASTGEQKAVLIAL
HCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
ILAQARVQEAARAVAPLLLLDEGVAHLDAPRRAALGEALSGQGLQAWVSGTEAQAFDSWA
HHHHHHHHHHHHHHHHHHHHHCCHHHCCCCHHHHHHHHHCCCCHHHHHCCCHHHHHHHHH
KNAQFLRIAEGAVLD
CCCCEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11214968 [H]