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The map label for this gene is jag [H]

Identifier: 83591336

GI number: 83591336

Start: 2626906

End: 2627526

Strand: Reverse

Name: jag [H]

Synonym: Moth_2520

Alternate gene names: 83591336

Gene position: 2627526-2626906 (Counterclockwise)

Preceding gene: 83591337

Following gene: 83591335

Centisome position: 99.95

GC content: 49.44

Gene sequence:

>621_bases
ATGAAAGAGATTGAGGTTAGCGGGAAAACCGTTGAAGAAGCTATTGAAAATGCGCTGAAGTCCCTGGGAGCTAAGCGGGA
AGAAGTCGAGATCAGCATTTTGGAAGAGGGTAGTAAAGGTTTTTTAGGTTTGCTGGGCTCGCGCCAGGCACGGGTGAAGG
TGGTCCTTCCCGACAGTCCGGAAAAAGTTATCAATGATTTTTTAAGCAAGGTTCTCGCAGATATGCAGATTGAAGCCGGA
ATCGAGATCCGGCCACGGGAGGGCTATTACTTCGTAAGTTTCCATGGTAAGGATCTGGGCATCCTCATTGGCCGCCGAGG
TGAGACCCTGGATGCCCTTCAGTATTTAACTAACCTGGCCGTTAACCGTATCCTGCAAAATAAGATTAGAATAATTCTTG
ACGTCGAGGGTTACCGTAAACGCCGGGAGCAGACCTTGATCAATTTAGCCCGGCGCCTGTCAAACAGGGTCAAGGAAACG
GGTAATCGGATTGTTCTGGAACCCATGAACCCACAGGAAAGGCGGGTCATCCACACAGCTTTGCAAAATGACAGCCAGAT
CTTAACCTTCAGTGAGGGACAGGAACCGAACCGCAAGGTCGTTATTGCCTTGCGCCATTAA

Upstream 100 bases:

>100_bases
GCCTGTCCCTTTACTGGGTTACCTTCAGCCTGATGGGCATTTTAGAGCAATGGTTAGCCCGTCGCCAGCCGCATCTGGTA
AAGGAGGAAATCAGCGCCAA

Downstream 100 bases:

>100_bases
CTATTTTGCGCTACAATAGTATTGCCCTGCAGGCCCAGTGATACCTTATGTATTACTGGGTCTTATTGTGTAAAGAAGGT
GCCGTAACCCGTGCTTGACG

Product: single-stranded nucleic acid binding R3H

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 206; Mature: 206

Protein sequence:

>206_residues
MKEIEVSGKTVEEAIENALKSLGAKREEVEISILEEGSKGFLGLLGSRQARVKVVLPDSPEKVINDFLSKVLADMQIEAG
IEIRPREGYYFVSFHGKDLGILIGRRGETLDALQYLTNLAVNRILQNKIRIILDVEGYRKRREQTLINLARRLSNRVKET
GNRIVLEPMNPQERRVIHTALQNDSQILTFSEGQEPNRKVVIALRH

Sequences:

>Translated_206_residues
MKEIEVSGKTVEEAIENALKSLGAKREEVEISILEEGSKGFLGLLGSRQARVKVVLPDSPEKVINDFLSKVLADMQIEAG
IEIRPREGYYFVSFHGKDLGILIGRRGETLDALQYLTNLAVNRILQNKIRIILDVEGYRKRREQTLINLARRLSNRVKET
GNRIVLEPMNPQERRVIHTALQNDSQILTFSEGQEPNRKVVIALRH
>Mature_206_residues
MKEIEVSGKTVEEAIENALKSLGAKREEVEISILEEGSKGFLGLLGSRQARVKVVLPDSPEKVINDFLSKVLADMQIEAG
IEIRPREGYYFVSFHGKDLGILIGRRGETLDALQYLTNLAVNRILQNKIRIILDVEGYRKRREQTLINLARRLSNRVKET
GNRIVLEPMNPQERRVIHTALQNDSQILTFSEGQEPNRKVVIALRH

Specific function: Unknown

COG id: COG1847

COG function: function code R; Predicted RNA-binding protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 R3H domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001374 [H]

Pfam domain/function: PF01424 R3H [H]

EC number: NA

Molecular weight: Translated: 23394; Mature: 23394

Theoretical pI: Translated: 9.90; Mature: 9.90

Prosite motif: PS51061 R3H

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKEIEVSGKTVEEAIENALKSLGAKREEVEISILEEGSKGFLGLLGSRQARVKVVLPDSP
CCCEECCCCHHHHHHHHHHHHCCCCCHHEEEEEEECCCCCEEEECCCCCEEEEEEECCCH
EKVINDFLSKVLADMQIEAGIEIRPREGYYFVSFHGKDLGILIGRRGETLDALQYLTNLA
HHHHHHHHHHHHHCCCCCCCCEEEECCCEEEEEEECCCEEEEEECCCCHHHHHHHHHHHH
VNRILQNKIRIILDVEGYRKRREQTLINLARRLSNRVKETGNRIVLEPMNPQERRVIHTA
HHHHHHCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHH
LQNDSQILTFSEGQEPNRKVVIALRH
HCCCCEEEEECCCCCCCCEEEEEEEC
>Mature Secondary Structure
MKEIEVSGKTVEEAIENALKSLGAKREEVEISILEEGSKGFLGLLGSRQARVKVVLPDSP
CCCEECCCCHHHHHHHHHHHHCCCCCHHEEEEEEECCCCCEEEECCCCCEEEEEEECCCH
EKVINDFLSKVLADMQIEAGIEIRPREGYYFVSFHGKDLGILIGRRGETLDALQYLTNLA
HHHHHHHHHHHHHCCCCCCCCEEEECCCEEEEEEECCCEEEEEECCCCHHHHHHHHHHHH
VNRILQNKIRIILDVEGYRKRREQTLINLARRLSNRVKETGNRIVLEPMNPQERRVIHTA
HHHHHHCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHH
LQNDSQILTFSEGQEPNRKVVIALRH
HCCCCEEEEECCCCCCCCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10427704; 11058132 [H]