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The map label for this gene is yqiR [H]

Identifier: 83590744

GI number: 83590744

Start: 1978082

End: 1979770

Strand: Reverse

Name: yqiR [H]

Synonym: Moth_1910

Alternate gene names: 83590744

Gene position: 1979770-1978082 (Counterclockwise)

Preceding gene: 83590746

Following gene: 83590743

Centisome position: 75.31

GC content: 59.92

Gene sequence:

>1689_bases
GTGAAGGAGCATCTGGACTTCTGGGGGGCAATTCTCGCCGCCCGGCGGCAGGGGATGATTTATGTTGACGCCGGGGGCCT
TATTAAGGTGGCCAATTCCCTGGCGACCGCCATCCTGGGATTGGACGGCTGTGATCTCAGGGGCCGCCGCCTGACGGAAG
TCTTTCCTGAGACCCGCCTGGCCGAGGTCCTGACCCGTAAGGGCCCTCTCCTTGGGACCAGCTTTACCGCCGGCAGTAGA
ATCTATCGGGTCGATTATTTCCCCGACGATGGGGGAGGTGTCGTCCTTCTTTTCAGTGACGAGCAGCCTGAGACGAATTC
CCTCAAAGCCCTTAACGAACTCTACGCCTCCCTCCTTGACGATTTTCCTCTATACCTGGTGGTCGTCGACGGCCGGGGGG
TGGTGGTCGCCATTAACCATTTATATGCCAGCCTCCTGGGTGCAAAGGCCGGTGCCCTGATCGGCCGGGAAGTAAAGGAT
ATTTTGCCCTTTACCTCCTTGCCGGAGGTCCTATCTTCGGGGATGGCGGTAGCCGGCCGGGAAGTGGCCTTCCGGGGCAA
AAAATTGCTATTATCGGAAGTGCCGGTTAAAGATGGGGCCGGGCATCTCCTGGGAGGAGTCGGTAAGGCCCTGGATCTCG
AGGACCTGGCAGCCGCCGGTTTCAGCGACCTCGCCCGCCGCCTGCAGGTCCTGGAGGGCAAGGTTCTTTTCTACCAGCAG
GAACTCCAGTCAATCCAGGGCGACCAGGACGCCTGGCAGGGCATCCTGGGGGTGAGCCCGGCTATGGTCCGGCTAAAAAA
AATGGCGGCCCGGGTAGCCCGCGGCGAGGCTAACGTTTTGATTACCGGCGAGAGCGGTACCGGGAAGGAACTGCTGGCCC
AGGCCATCCACCGGGCCAGTCCTCGCCGGAATGAACCATTGATCAAGATCAACTGTGCCGCCATCCCGGAAAACCTGCTG
GAGGCCGAACTCTTCGGCTACGAAGAGGGGGCCTTTACCGGCGCCGCCCGGGGCGGCAAACCGGGCAAGTTTGAACTGGC
TGACGGCGGTACCATCTTCCTGGATGAAGTCGGCGACCTGCCCCTCAGTATGCAGCCCAAGCTCCTGCGGGTCCTGCAGG
AAAGGGCCTTTGAACGGGTCGGGGGACGCCGGACCATCAAGGTTGATGTAAGGATTATTGCTGCCACCAACCAGGATCTC
CTGGCCCTGGAGGCGGCCGGCAAATTTCGCCTTGACCTTTACTACCGCCTGGCGGTGGTTACCCTGACGGTACCACCCTT
AAGGGAACGGCCGGGGGACCTCGAAATACTGGTGGCGGCCATTATCCGGCGTTTAAATGCACGCTACCACCAGACGGTCC
GGGGCCTGGATCCGGAGGTACAGCGGCTTTTTTCCCGCTATAGCTGGCCGGGGAATGTCCGGGAGCTGGAAAATGTCCTG
GAGCATGCCTTTAATTTCCTGGATCCGGGGGAAGAAATAATTACCTTGAAGCATCTCCCGGCCACCATGCAAAGGACGAT
TGGTGGCGGGGGTGGCCTGAAGCTGAAGAGTGCTGTCGCTACGGCGGAAAGGGAAGTTATCTTAAAGGCCCTCGCGGCCG
CTGGTGGAAACAAACAGGAAGCGGCCCGTCTCCTGGGTATTCACCCCTCCGGCCTTTATCAAAAGCTCAAGCGTTATGAT
ATCAATTAG

Upstream 100 bases:

>100_bases
GGTAGTTTAAGCTCATCCATACCCTATTTATTTACAAGAGCGGCCGGTGAATGTTAACATAAAGAGAGAATCCTGCGGGC
GTTAAGGTGAGGGGAGAAAA

Downstream 100 bases:

>100_bases
ATCGTCTGGCCCTTGCCGGGAGAGTCAGGGGAGGGATCGTGCGTGGCAATGGCGGAGTTAGAAGAGGGTATAGTCAGCCT
TTTTCAGGACCGGAAAGGGA

Product: sigma-54 dependent trancsriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 562; Mature: 562

Protein sequence:

>562_residues
MKEHLDFWGAILAARRQGMIYVDAGGLIKVANSLATAILGLDGCDLRGRRLTEVFPETRLAEVLTRKGPLLGTSFTAGSR
IYRVDYFPDDGGGVVLLFSDEQPETNSLKALNELYASLLDDFPLYLVVVDGRGVVVAINHLYASLLGAKAGALIGREVKD
ILPFTSLPEVLSSGMAVAGREVAFRGKKLLLSEVPVKDGAGHLLGGVGKALDLEDLAAAGFSDLARRLQVLEGKVLFYQQ
ELQSIQGDQDAWQGILGVSPAMVRLKKMAARVARGEANVLITGESGTGKELLAQAIHRASPRRNEPLIKINCAAIPENLL
EAELFGYEEGAFTGAARGGKPGKFELADGGTIFLDEVGDLPLSMQPKLLRVLQERAFERVGGRRTIKVDVRIIAATNQDL
LALEAAGKFRLDLYYRLAVVTLTVPPLRERPGDLEILVAAIIRRLNARYHQTVRGLDPEVQRLFSRYSWPGNVRELENVL
EHAFNFLDPGEEIITLKHLPATMQRTIGGGGGLKLKSAVATAEREVILKALAAAGGNKQEAARLLGIHPSGLYQKLKRYD
IN

Sequences:

>Translated_562_residues
MKEHLDFWGAILAARRQGMIYVDAGGLIKVANSLATAILGLDGCDLRGRRLTEVFPETRLAEVLTRKGPLLGTSFTAGSR
IYRVDYFPDDGGGVVLLFSDEQPETNSLKALNELYASLLDDFPLYLVVVDGRGVVVAINHLYASLLGAKAGALIGREVKD
ILPFTSLPEVLSSGMAVAGREVAFRGKKLLLSEVPVKDGAGHLLGGVGKALDLEDLAAAGFSDLARRLQVLEGKVLFYQQ
ELQSIQGDQDAWQGILGVSPAMVRLKKMAARVARGEANVLITGESGTGKELLAQAIHRASPRRNEPLIKINCAAIPENLL
EAELFGYEEGAFTGAARGGKPGKFELADGGTIFLDEVGDLPLSMQPKLLRVLQERAFERVGGRRTIKVDVRIIAATNQDL
LALEAAGKFRLDLYYRLAVVTLTVPPLRERPGDLEILVAAIIRRLNARYHQTVRGLDPEVQRLFSRYSWPGNVRELENVL
EHAFNFLDPGEEIITLKHLPATMQRTIGGGGGLKLKSAVATAEREVILKALAAAGGNKQEAARLLGIHPSGLYQKLKRYD
IN
>Mature_562_residues
MKEHLDFWGAILAARRQGMIYVDAGGLIKVANSLATAILGLDGCDLRGRRLTEVFPETRLAEVLTRKGPLLGTSFTAGSR
IYRVDYFPDDGGGVVLLFSDEQPETNSLKALNELYASLLDDFPLYLVVVDGRGVVVAINHLYASLLGAKAGALIGREVKD
ILPFTSLPEVLSSGMAVAGREVAFRGKKLLLSEVPVKDGAGHLLGGVGKALDLEDLAAAGFSDLARRLQVLEGKVLFYQQ
ELQSIQGDQDAWQGILGVSPAMVRLKKMAARVARGEANVLITGESGTGKELLAQAIHRASPRRNEPLIKINCAAIPENLL
EAELFGYEEGAFTGAARGGKPGKFELADGGTIFLDEVGDLPLSMQPKLLRVLQERAFERVGGRRTIKVDVRIIAATNQDL
LALEAAGKFRLDLYYRLAVVTLTVPPLRERPGDLEILVAAIIRRLNARYHQTVRGLDPEVQRLFSRYSWPGNVRELENVL
EHAFNFLDPGEEIITLKHLPATMQRTIGGGGGLKLKSAVATAEREVILKALAAAGGNKQEAARLLGIHPSGLYQKLKRYD
IN

Specific function: Member Of The Two-Component Regulatory System Atos/Atoc Involved In The Transcriptional Regulation Of The Ato Genes For Acetoacetate Metabolism. Also An Inhibitor Of Polyamine Biosynthesis. [C]

COG id: COG3829

COG function: function code KT; Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 sigma-54 factor interaction domain [H]

Homologues:

Organism=Escherichia coli, GI1788550, Length=366, Percent_Identity=43.4426229508197, Blast_Score=285, Evalue=6e-78,
Organism=Escherichia coli, GI1790437, Length=305, Percent_Identity=49.8360655737705, Blast_Score=273, Evalue=2e-74,
Organism=Escherichia coli, GI1789233, Length=485, Percent_Identity=34.8453608247423, Blast_Score=264, Evalue=9e-72,
Organism=Escherichia coli, GI87082117, Length=229, Percent_Identity=54.585152838428, Blast_Score=258, Evalue=8e-70,
Organism=Escherichia coli, GI1789087, Length=266, Percent_Identity=47.7443609022556, Blast_Score=245, Evalue=5e-66,
Organism=Escherichia coli, GI1790299, Length=361, Percent_Identity=40.9972299168975, Blast_Score=240, Evalue=2e-64,
Organism=Escherichia coli, GI1788905, Length=327, Percent_Identity=41.8960244648318, Blast_Score=240, Evalue=2e-64,
Organism=Escherichia coli, GI87082152, Length=314, Percent_Identity=43.9490445859873, Blast_Score=235, Evalue=7e-63,
Organism=Escherichia coli, GI1786524, Length=318, Percent_Identity=42.4528301886792, Blast_Score=229, Evalue=3e-61,
Organism=Escherichia coli, GI1787583, Length=324, Percent_Identity=37.962962962963, Blast_Score=203, Evalue=2e-53,
Organism=Escherichia coli, GI87081872, Length=320, Percent_Identity=38.125, Blast_Score=192, Evalue=7e-50,
Organism=Escherichia coli, GI87081858, Length=307, Percent_Identity=34.2019543973941, Blast_Score=158, Evalue=9e-40,
Organism=Escherichia coli, GI1789828, Length=247, Percent_Identity=33.6032388663968, Blast_Score=125, Evalue=1e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR020441
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR002197
- InterPro:   IPR016040
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR013767
- InterPro:   IPR002078 [H]

Pfam domain/function: PF02954 HTH_8; PF00989 PAS; PF00158 Sigma54_activat [H]

EC number: NA

Molecular weight: Translated: 60973; Mature: 60973

Theoretical pI: Translated: 8.84; Mature: 8.84

Prosite motif: PS50112 PAS ; PS00675 SIGMA54_INTERACT_1 ; PS00676 SIGMA54_INTERACT_2 ; PS00688 SIGMA54_INTERACT_3 ; PS50045 SIGMA54_INTERACT_4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKEHLDFWGAILAARRQGMIYVDAGGLIKVANSLATAILGLDGCDLRGRRLTEVFPETRL
CCCHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCHHHH
AEVLTRKGPLLGTSFTAGSRIYRVDYFPDDGGGVVLLFSDEQPETNSLKALNELYASLLD
HHHHHHCCCCCCCEECCCCEEEEEEECCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC
DFPLYLVVVDGRGVVVAINHLYASLLGAKAGALIGREVKDILPFTSLPEVLSSGMAVAGR
CCCEEEEEECCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCEECCC
EVAFRGKKLLLSEVPVKDGAGHLLGGVGKALDLEDLAAAGFSDLARRLQVLEGKVLFYQQ
HHHHCCCHHHHCCCCCCCCCCHHHHCCCCCCCHHHHHHCCHHHHHHHHHHHCCHHHHHHH
ELQSIQGDQDAWQGILGVSPAMVRLKKMAARVARGEANVLITGESGTGKELLAQAIHRAS
HHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHCC
PRRNEPLIKINCAAIPENLLEAELFGYEEGAFTGAARGGKPGKFELADGGTIFLDEVGDL
CCCCCCEEEEEEHHCCHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCEEEEECCCCC
PLSMQPKLLRVLQERAFERVGGRRTIKVDVRIIAATNQDLLALEAAGKFRLDLYYRLAVV
CCCCCHHHHHHHHHHHHHHHCCCEEEEEEEEEEEECCCCEEEEECCCCEEEEHEEEEEEE
TLTVPPLRERPGDLEILVAAIIRRLNARYHQTVRGLDPEVQRLFSRYSWPGNVRELENVL
EEECCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHH
EHAFNFLDPGEEIITLKHLPATMQRTIGGGGGLKLKSAVATAEREVILKALAAAGGNKQE
HHHHHCCCCCCCEEEEECCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHH
AARLLGIHPSGLYQKLKRYDIN
HHHHHCCCCHHHHHHHHHCCCC
>Mature Secondary Structure
MKEHLDFWGAILAARRQGMIYVDAGGLIKVANSLATAILGLDGCDLRGRRLTEVFPETRL
CCCHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCHHHH
AEVLTRKGPLLGTSFTAGSRIYRVDYFPDDGGGVVLLFSDEQPETNSLKALNELYASLLD
HHHHHHCCCCCCCEECCCCEEEEEEECCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC
DFPLYLVVVDGRGVVVAINHLYASLLGAKAGALIGREVKDILPFTSLPEVLSSGMAVAGR
CCCEEEEEECCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCEECCC
EVAFRGKKLLLSEVPVKDGAGHLLGGVGKALDLEDLAAAGFSDLARRLQVLEGKVLFYQQ
HHHHCCCHHHHCCCCCCCCCCHHHHCCCCCCCHHHHHHCCHHHHHHHHHHHCCHHHHHHH
ELQSIQGDQDAWQGILGVSPAMVRLKKMAARVARGEANVLITGESGTGKELLAQAIHRAS
HHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHCC
PRRNEPLIKINCAAIPENLLEAELFGYEEGAFTGAARGGKPGKFELADGGTIFLDEVGDL
CCCCCCEEEEEEHHCCHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCEEEEECCCCC
PLSMQPKLLRVLQERAFERVGGRRTIKVDVRIIAATNQDLLALEAAGKFRLDLYYRLAVV
CCCCCHHHHHHHHHHHHHHHCCCEEEEEEEEEEEECCCCEEEEECCCCEEEEHEEEEEEE
TLTVPPLRERPGDLEILVAAIIRRLNARYHQTVRGLDPEVQRLFSRYSWPGNVRELENVL
EEECCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHH
EHAFNFLDPGEEIITLKHLPATMQRTIGGGGGLKLKSAVATAEREVILKALAAAGGNKQE
HHHHHCCCCCCCEEEEECCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHH
AARLLGIHPSGLYQKLKRYDIN
HHHHHCCCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377 [H]