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The map label for this gene is ydcN [C]

Identifier: 83590661

GI number: 83590661

Start: 1886331

End: 1887089

Strand: Reverse

Name: ydcN [C]

Synonym: Moth_1827

Alternate gene names: 83590661

Gene position: 1887089-1886331 (Counterclockwise)

Preceding gene: 83590663

Following gene: 83590659

Centisome position: 71.79

GC content: 55.99

Gene sequence:

>759_bases
ATGCGCGTATGTGGTAAACGTATCCGGGAACTGCGGGAGGAACGCGGTTATTCCCTGCAGGACCTGGCGCAGCGGGCGGG
GGTTTCGGTATCTTACTTGAGCGAAATTGAACGGGGGGCCAAAAGGCCCTCCTTAAAAACCCTGGATAAAGTAGCCCGGG
CCCTGAACCTCCCCCGGGAACAACTCATAGAAACCGGTGGTGAAGGCGGGCTGGCACCGGGTGAGAGGATCCGTCTCCTG
CGGGAGCGGGCTGGCAAAAACCTGAATACCCTGGCCGAGGCTGCCGGTATCTCCGTTTCCTACTTAAGTGAAATTGAGCG
GGGCAATGTTTACCCCGCTATTGATACCCTGAAAAAAATCACCGCTGCCCTGGAGGTTCCTTTAAGCTCGGTTATCGGTA
CCGGTGGTTCCCTGGGCCACAAATTACGCCAGGCCAGGGAAGAAAGGGGCCTTACCCAAGCCGAGTTAGCCAGGGCTGCC
GGCGTCTCCGCCGGGCTTATTGGCCAGATCGAACAGGGTAAAGTACAGCCCTCCTTAAAAACCCTGGAAAGGGTGGGGGC
GGTGCTGGATATTTCACCCTGTTACTTTATCGCCGATGATGCCGGAGTTGACGAGGTATTAAACCAGATGAGCCCCGAGT
TACGCCAGTTGCTTATCGAACCCCAGGTCCAGTCCGTACTGCGGCTGATCTGCAACTGTAACGAGTCCGAACTGCGATTT
ATCCTCAACTTTATCCAGCTCTATAAGCGCAGCCACTAA

Upstream 100 bases:

>100_bases
TTAAGAAAGTGTGAAACTTGACAGGGCAGGACCTTTTAACTTATACTCGATTTAGAAATACTATAGTAGACTTAAGCCAT
GGCCCAGAGGAGCGAAAAAA

Downstream 100 bases:

>100_bases
AGGCTTAGCTGGGCGATTAGTTGCTGCAGGGTGGTTGCCGAGTGTTTCAGGGCCGCCTTTTCCCTGGCCACCAGGGGAAT
GGCCAGGACCTTTTCCCGGC

Product: XRE family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator; XRE Family Transcriptional Regulator; Helix-Turn-Helix Domain-Containing Protein; Helix-Turn-Helix Domain Protein; AraC Family Transcriptional Regulator

Number of amino acids: Translated: 252; Mature: 252

Protein sequence:

>252_residues
MRVCGKRIRELREERGYSLQDLAQRAGVSVSYLSEIERGAKRPSLKTLDKVARALNLPREQLIETGGEGGLAPGERIRLL
RERAGKNLNTLAEAAGISVSYLSEIERGNVYPAIDTLKKITAALEVPLSSVIGTGGSLGHKLRQAREERGLTQAELARAA
GVSAGLIGQIEQGKVQPSLKTLERVGAVLDISPCYFIADDAGVDEVLNQMSPELRQLLIEPQVQSVLRLICNCNESELRF
ILNFIQLYKRSH

Sequences:

>Translated_252_residues
MRVCGKRIRELREERGYSLQDLAQRAGVSVSYLSEIERGAKRPSLKTLDKVARALNLPREQLIETGGEGGLAPGERIRLL
RERAGKNLNTLAEAAGISVSYLSEIERGNVYPAIDTLKKITAALEVPLSSVIGTGGSLGHKLRQAREERGLTQAELARAA
GVSAGLIGQIEQGKVQPSLKTLERVGAVLDISPCYFIADDAGVDEVLNQMSPELRQLLIEPQVQSVLRLICNCNESELRF
ILNFIQLYKRSH
>Mature_252_residues
MRVCGKRIRELREERGYSLQDLAQRAGVSVSYLSEIERGAKRPSLKTLDKVARALNLPREQLIETGGEGGLAPGERIRLL
RERAGKNLNTLAEAAGISVSYLSEIERGNVYPAIDTLKKITAALEVPLSSVIGTGGSLGHKLRQAREERGLTQAELARAA
GVSAGLIGQIEQGKVQPSLKTLERVGAVLDISPCYFIADDAGVDEVLNQMSPELRQLLIEPQVQSVLRLICNCNESELRF
ILNFIQLYKRSH

Specific function: Unknown

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27626; Mature: 27626

Theoretical pI: Translated: 8.89; Mature: 8.89

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVCGKRIRELREERGYSLQDLAQRAGVSVSYLSEIERGAKRPSLKTLDKVARALNLPRE
CCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHH
QLIETGGEGGLAPGERIRLLRERAGKNLNTLAEAAGISVSYLSEIERGNVYPAIDTLKKI
HHHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHH
TAALEVPLSSVIGTGGSLGHKLRQAREERGLTQAELARAAGVSAGLIGQIEQGKVQPSLK
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHCCHHCCCCCHHHH
TLERVGAVLDISPCYFIADDAGVDEVLNQMSPELRQLLIEPQVQSVLRLICNCNESELRF
HHHHHCHHHCCCCCEEECCCCCHHHHHHHHCHHHHHHHHCHHHHHHHHHHHCCCHHHHHH
ILNFIQLYKRSH
HHHHHHHHHCCC
>Mature Secondary Structure
MRVCGKRIRELREERGYSLQDLAQRAGVSVSYLSEIERGAKRPSLKTLDKVARALNLPRE
CCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHH
QLIETGGEGGLAPGERIRLLRERAGKNLNTLAEAAGISVSYLSEIERGNVYPAIDTLKKI
HHHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHH
TAALEVPLSSVIGTGGSLGHKLRQAREERGLTQAELARAAGVSAGLIGQIEQGKVQPSLK
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHCCHHCCCCCHHHH
TLERVGAVLDISPCYFIADDAGVDEVLNQMSPELRQLLIEPQVQSVLRLICNCNESELRF
HHHHHCHHHCCCCCEEECCCCCHHHHHHHHCHHHHHHHHCHHHHHHHHHHHCCCHHHHHH
ILNFIQLYKRSH
HHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA