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The map label for this gene is opuCD [H]

Identifier: 83590522

GI number: 83590522

Start: 1724735

End: 1725358

Strand: Reverse

Name: opuCD [H]

Synonym: Moth_1686

Alternate gene names: 83590522

Gene position: 1725358-1724735 (Counterclockwise)

Preceding gene: 83590523

Following gene: 83590521

Centisome position: 65.63

GC content: 54.97

Gene sequence:

>624_bases
ATGGATAAAGTGCTGGCTCTGAGTTGGCAACATATCAGCTTGTCGATAATGGGAGTTGCGCTGGCCGCTGCGGGCGGCAT
TCCGTTGGGAATATTGTTGACCAGGTACCGGTGGTTGGCCAAGCTTGTAATGGCAGCCACCGAGGTGATTCAAACTATTC
CCAGCCTGGCCATGTTAGCTCTGTTGATGATGCTGTTCGGGCTGGGGGATACTACCCTTGTTGTATCGTTGTTCCTTTAT
GCCCTGCTGCCCATCGTCCGCAATACCTATACCGGGCTATTAGGGGTAGACCCCGGCCTGCTGGAGGCAGGTAAAGGCAT
GGGGATGACCAGGAGCCAATTAATATGGCGAGTGCAAGTACCAATTGCGCTACCGGTAATCCTGGCCGGTATGCGTGTGG
CTCTTGTCACGGCCATTGGCATTGCGACCATCGGCGTGCTCATTGGGGCAGGCGGCTTGGGGACGCTAATCTGGCGCGGT
ATTCAAACGAGGAACAACACTATGGTACTTATGGGGGCCGTACCTGCGGCGCTGCTGGCTATTTTGACCGACGCCGGACT
GGCCCTGCTGGAACAAGTATTGGTTCCGCGGGGGCTCAAAAAAAAGGCTATCTCAGCATTATAA

Upstream 100 bases:

>100_bases
TGGCCAGCTGGTCACTAGGTTTTGTAGAGCGTGCGGTAACCCCGCGGGGGCTGCGACAGCGATAACCCACCAGTTCAAAA
CCAATGAGAGGAGGCGAAAG

Downstream 100 bases:

>100_bases
ATTAATTATAAATTAAAGAAAGGATGGGATATCTTGCGCCAGAAATCCAAACGAGTGGGGAAGCTGATCGCGCTATTTAC
AGGCATCGCTATGTTGCTAT

Product: binding-protein dependent transport system inner membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 207; Mature: 207

Protein sequence:

>207_residues
MDKVLALSWQHISLSIMGVALAAAGGIPLGILLTRYRWLAKLVMAATEVIQTIPSLAMLALLMMLFGLGDTTLVVSLFLY
ALLPIVRNTYTGLLGVDPGLLEAGKGMGMTRSQLIWRVQVPIALPVILAGMRVALVTAIGIATIGVLIGAGGLGTLIWRG
IQTRNNTMVLMGAVPAALLAILTDAGLALLEQVLVPRGLKKKAISAL

Sequences:

>Translated_207_residues
MDKVLALSWQHISLSIMGVALAAAGGIPLGILLTRYRWLAKLVMAATEVIQTIPSLAMLALLMMLFGLGDTTLVVSLFLY
ALLPIVRNTYTGLLGVDPGLLEAGKGMGMTRSQLIWRVQVPIALPVILAGMRVALVTAIGIATIGVLIGAGGLGTLIWRG
IQTRNNTMVLMGAVPAALLAILTDAGLALLEQVLVPRGLKKKAISAL
>Mature_207_residues
MDKVLALSWQHISLSIMGVALAAAGGIPLGILLTRYRWLAKLVMAATEVIQTIPSLAMLALLMMLFGLGDTTLVVSLFLY
ALLPIVRNTYTGLLGVDPGLLEAGKGMGMTRSQLIWRVQVPIALPVILAGMRVALVTAIGIATIGVLIGAGGLGTLIWRG
IQTRNNTMVLMGAVPAALLAILTDAGLALLEQVLVPRGLKKKAISAL

Specific function: Involved in a high affinity multicomponent binding- protein-dependent transport system for glycine betaine, carnitine and choline; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1174

COG function: function code E; ABC-type proline/glycine betaine transport systems, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788451, Length=206, Percent_Identity=37.378640776699, Blast_Score=111, Evalue=4e-26,
Organism=Escherichia coli, GI1788449, Length=168, Percent_Identity=40.4761904761905, Blast_Score=101, Evalue=3e-23,
Organism=Escherichia coli, GI1789033, Length=159, Percent_Identity=36.4779874213836, Blast_Score=96, Evalue=1e-21,
Organism=Escherichia coli, GI1786564, Length=201, Percent_Identity=29.8507462686567, Blast_Score=68, Evalue=5e-13,
Organism=Escherichia coli, GI87081802, Length=192, Percent_Identity=29.1666666666667, Blast_Score=68, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 21684; Mature: 21684

Theoretical pI: Translated: 11.09; Mature: 11.09

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.3 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.3 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKVLALSWQHISLSIMGVALAAAGGIPLGILLTRYRWLAKLVMAATEVIQTIPSLAMLA
CCCEEEEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLMMLFGLGDTTLVVSLFLYALLPIVRNTYTGLLGVDPGLLEAGKGMGMTRSQLIWRVQV
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCHHHCCCCCCCCHHHHEEEEEC
PIALPVILAGMRVALVTAIGIATIGVLIGAGGLGTLIWRGIQTRNNTMVLMGAVPAALLA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCEEEEHHHHHHHHH
ILTDAGLALLEQVLVPRGLKKKAISAL
HHHHHHHHHHHHHHCCCCCHHHHHHCC
>Mature Secondary Structure
MDKVLALSWQHISLSIMGVALAAAGGIPLGILLTRYRWLAKLVMAATEVIQTIPSLAMLA
CCCEEEEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLMMLFGLGDTTLVVSLFLYALLPIVRNTYTGLLGVDPGLLEAGKGMGMTRSQLIWRVQV
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCHHHCCCCCCCCHHHHEEEEEC
PIALPVILAGMRVALVTAIGIATIGVLIGAGGLGTLIWRGIQTRNNTMVLMGAVPAALLA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCEEEEHHHHHHHHH
ILTDAGLALLEQVLVPRGLKKKAISAL
HHHHHHHHHHHHHHCCCCCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10216873; 9384377 [H]