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The map label for this gene is lytT [H]

Identifier: 83590457

GI number: 83590457

Start: 1658235

End: 1658972

Strand: Reverse

Name: lytT [H]

Synonym: Moth_1621

Alternate gene names: 83590457

Gene position: 1658972-1658235 (Counterclockwise)

Preceding gene: 83590458

Following gene: 83590456

Centisome position: 63.11

GC content: 43.22

Gene sequence:

>738_bases
ATGCTAACGGGCATTATTGCTGATGACAATGAAATTGAAAGGTTGTATTTCTGCAAGCTACTGGAAGAAACTAATGAGGT
TAAAATTTTGGCTGAAGCTCAGGACGGCTTGACGGTTTTAGATCTGGTTACCAGGTTGCGGCCGGACATTGCCTTTCTGG
ATATCGAAATGCCGGGGCCCAACGGCCTAGAAGTAGCCCGGGAAATTCTTACCTTAGCGCCCGAAACCTTAATTGTCTTT
TTCACTGCCTATCGGGACTTTGCCGTGGAAGCCTTTGCCCTAAACAGTGTTGATTATTTGTTGAAACCCTTTGACGCTTT
CCGGGTCAGGAAAACCGTGGCCAAAGTCCAGGAGAAGCTGGCAGCCCGGGAAGTTATAAAGAAACCTGGTGGCGGGAGGC
TAGACAAACTGGCAATCAGAAACAAGGGCAGGATATTCTTAATTAATCTCGACGAGATCATTTTCATAGAAAAGAGCGGG
AAAAACACCACCATAATCCATACAGATCGAAAGGACTTCCATACGCCTCAAACCATCGCCGAACTGGAACAGCAACTGGC
GAGGCATAGTTTTTTCCAAAGGGTTCATAAATCATATTTAATCAATTTAAACATGGTTGAAAGTATTAGCCCTTTTGGCG
GTAACTCCTTTATCGTTAAGTTTAGCGGTTGTAAAAAAGATGCTATTATTAGCAGGGGCAATATAGATTTAGTCAAAAAG
CATCTAAAAATAAGCTAA

Upstream 100 bases:

>100_bases
ATGGTAATAAGTCATGGTGGCACTATCGAAGTAGAGACTGATCCGGTAACTTTCCGGGTGAAGTTCCCGGTATGAAGTTG
CTTATCTAAGGGGTGGCATT

Downstream 100 bases:

>100_bases
TAGGTTGGATACGTAGGTTGGATACTTACTTTGTTATAGCAAAGGATCTGGACAAAGAGTGATCCATAACCTCTCCCTGC
GGCTGGCAAAATTTTTCGCT

Product: LytR/AlgR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 245; Mature: 245

Protein sequence:

>245_residues
MLTGIIADDNEIERLYFCKLLEETNEVKILAEAQDGLTVLDLVTRLRPDIAFLDIEMPGPNGLEVAREILTLAPETLIVF
FTAYRDFAVEAFALNSVDYLLKPFDAFRVRKTVAKVQEKLAAREVIKKPGGGRLDKLAIRNKGRIFLINLDEIIFIEKSG
KNTTIIHTDRKDFHTPQTIAELEQQLARHSFFQRVHKSYLINLNMVESISPFGGNSFIVKFSGCKKDAIISRGNIDLVKK
HLKIS

Sequences:

>Translated_245_residues
MLTGIIADDNEIERLYFCKLLEETNEVKILAEAQDGLTVLDLVTRLRPDIAFLDIEMPGPNGLEVAREILTLAPETLIVF
FTAYRDFAVEAFALNSVDYLLKPFDAFRVRKTVAKVQEKLAAREVIKKPGGGRLDKLAIRNKGRIFLINLDEIIFIEKSG
KNTTIIHTDRKDFHTPQTIAELEQQLARHSFFQRVHKSYLINLNMVESISPFGGNSFIVKFSGCKKDAIISRGNIDLVKK
HLKIS
>Mature_245_residues
MLTGIIADDNEIERLYFCKLLEETNEVKILAEAQDGLTVLDLVTRLRPDIAFLDIEMPGPNGLEVAREILTLAPETLIVF
FTAYRDFAVEAFALNSVDYLLKPFDAFRVRKTVAKVQEKLAAREVIKKPGGGRLDKLAIRNKGRIFLINLDEIIFIEKSG
KNTTIIHTDRKDFHTPQTIAELEQQLARHSFFQRVHKSYLINLNMVESISPFGGNSFIVKFSGCKKDAIISRGNIDLVKK
HLKIS

Specific function: Member of the two-component regulatory system lytS/lytT that probably regulates genes involved in cell wall metabolism [H]

COG id: COG3279

COG function: function code KT; Response regulator of the LytR/AlgR family

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788724, Length=234, Percent_Identity=29.0598290598291, Blast_Score=118, Evalue=3e-28,
Organism=Escherichia coli, GI87082052, Length=212, Percent_Identity=30.188679245283, Blast_Score=104, Evalue=5e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR007492
- InterPro:   IPR001789 [H]

Pfam domain/function: PF04397 LytTR; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 27760; Mature: 27760

Theoretical pI: Translated: 8.67; Mature: 8.67

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50930 HTH_LYTTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTGIIADDNEIERLYFCKLLEETNEVKILAEAQDGLTVLDLVTRLRPDIAFLDIEMPGP
CCEEEECCCCCHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHCCCEEEEEEECCCC
NGLEVAREILTLAPETLIVFFTAYRDFAVEAFALNSVDYLLKPFDAFRVRKTVAKVQEKL
CHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHHHHHHHHHHHHHHHHH
AAREVIKKPGGGRLDKLAIRNKGRIFLINLDEIIFIEKSGKNTTIIHTDRKDFHTPQTIA
HHHHHHHCCCCCCCCEEEECCCCEEEEEECCEEEEEEECCCCEEEEEECCCCCCCHHHHH
ELEQQLARHSFFQRVHKSYLINLNMVESISPFGGNSFIVKFSGCKKDAIISRGNIDLVKK
HHHHHHHHHHHHHHHHHHHEEEEEHHHHCCCCCCCEEEEEECCCCCCCEEECCCHHHHHH
HLKIS
HHCCC
>Mature Secondary Structure
MLTGIIADDNEIERLYFCKLLEETNEVKILAEAQDGLTVLDLVTRLRPDIAFLDIEMPGP
CCEEEECCCCCHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHCCCEEEEEEECCCC
NGLEVAREILTLAPETLIVFFTAYRDFAVEAFALNSVDYLLKPFDAFRVRKTVAKVQEKL
CHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHHHHHHHHHHHHHHHHH
AAREVIKKPGGGRLDKLAIRNKGRIFLINLDEIIFIEKSGKNTTIIHTDRKDFHTPQTIA
HHHHHHHCCCCCCCCEEEECCCCEEEEEECCEEEEEEECCCCEEEEEECCCCCCCHHHHH
ELEQQLARHSFFQRVHKSYLINLNMVESISPFGGNSFIVKFSGCKKDAIISRGNIDLVKK
HHHHHHHHHHHHHHHHHHHEEEEEHHHHCCCCCCCEEEEEECCCCCCCEEECCCHHHHHH
HLKIS
HHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12235376 [H]