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The map label for this gene is yagI [H]

Identifier: 83589282

GI number: 83589282

Start: 418409

End: 419215

Strand: Reverse

Name: yagI [H]

Synonym: Moth_0417

Alternate gene names: 83589282

Gene position: 419215-418409 (Counterclockwise)

Preceding gene: 83589283

Following gene: 83589277

Centisome position: 15.95

GC content: 53.78

Gene sequence:

>807_bases
TTGTCCCAAGTTGAAGGTCATGTCCAGTCGCTGGAGAAGGCCCTCAAAATATTAGAAGCTCTGGCGGCGGCCGGAGAGGG
AATAGGTTTAAGCGAGCTCAGCCGCCGGCTGAACCTAAATAAAAGCACCGTTTACCGCATGCTTTCCACTTTGAAGGCTT
ACGGTTACGTTGACCAGGAGGAGACCACGGAAAAATATGTCCTTGGCTTGAAAATCCTGGATCTAAGTGGCAGCCTATTA
GAAAGGCTTGACGTCCGGGCCGTTGCTCACCCCTACCTCAAGGAACTGGCTGACGCGACCCAGGAAGTAGCCCATATGGT
TATCAGGGATGGTGCCGAAGCTGTTTATATTGACAAGGTGGAGGGTAACCGCACCATTCGCATGCACTCCCAGATCGGTC
GCCGGGTGGCTCTTCACTCTACTGCCGTGGGTAAAGCCATCCTTGCCTTCCTGCCGGAGCAAGAGGTAGTAAAGATTGCC
ACCGACCGGGGTTTGCCCCGCTTTACACCGCGAACCATTACTACTATGGCATCTTTACAGGCCGAACTGGCCCGGGTAAG
GGAACAGGGATATTCAGTGGACGATGGCGAAAATGAAGAAGGGATTCGTTGTGTCGGTGCACCCATCTTTGATCATAGCG
GCCAGGTAGTAGCTGCTTTAAGCGTTTCCGGCCTAACTATAAGCGTTACACCGGAAAGGGTACCAGAGCTGGGAAAAATG
GTCGGCCACGCCGGGCAGGAGATATCCCGGCAACTGGGTTTTAAACCGGCGACCGCGGAGCGCTCTTTTCCTAGTCGGCT
TCTTTGA

Upstream 100 bases:

>100_bases
AATGGATATTCTTCTATTAGGCAAGCTTTACTATAGCAAAAATCGATTGGCAAAAGTCTTACCGTAATCCTGTACGATTT
TACTTCTGGAGTGAATAGCA

Downstream 100 bases:

>100_bases
TTTCGCTTATTAGTTTATCAACGATACCCCTCATAACTATGGTGTACCAAGTTCCGTAAAATAGTTCAGGATGTTCCCCC
TTGCTTCAAGAAAAAGAAGA

Product: IclR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 268; Mature: 267

Protein sequence:

>268_residues
MSQVEGHVQSLEKALKILEALAAAGEGIGLSELSRRLNLNKSTVYRMLSTLKAYGYVDQEETTEKYVLGLKILDLSGSLL
ERLDVRAVAHPYLKELADATQEVAHMVIRDGAEAVYIDKVEGNRTIRMHSQIGRRVALHSTAVGKAILAFLPEQEVVKIA
TDRGLPRFTPRTITTMASLQAELARVREQGYSVDDGENEEGIRCVGAPIFDHSGQVVAALSVSGLTISVTPERVPELGKM
VGHAGQEISRQLGFKPATAERSFPSRLL

Sequences:

>Translated_268_residues
MSQVEGHVQSLEKALKILEALAAAGEGIGLSELSRRLNLNKSTVYRMLSTLKAYGYVDQEETTEKYVLGLKILDLSGSLL
ERLDVRAVAHPYLKELADATQEVAHMVIRDGAEAVYIDKVEGNRTIRMHSQIGRRVALHSTAVGKAILAFLPEQEVVKIA
TDRGLPRFTPRTITTMASLQAELARVREQGYSVDDGENEEGIRCVGAPIFDHSGQVVAALSVSGLTISVTPERVPELGKM
VGHAGQEISRQLGFKPATAERSFPSRLL
>Mature_267_residues
SQVEGHVQSLEKALKILEALAAAGEGIGLSELSRRLNLNKSTVYRMLSTLKAYGYVDQEETTEKYVLGLKILDLSGSLLE
RLDVRAVAHPYLKELADATQEVAHMVIRDGAEAVYIDKVEGNRTIRMHSQIGRRVALHSTAVGKAILAFLPEQEVVKIAT
DRGLPRFTPRTITTMASLQAELARVREQGYSVDDGENEEGIRCVGAPIFDHSGQVVAALSVSGLTISVTPERVPELGKMV
GHAGQEISRQLGFKPATAERSFPSRLL

Specific function: Unknown

COG id: COG1414

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 iclR-ED (iclR effector binding) domain [H]

Homologues:

Organism=Escherichia coli, GI1786468, Length=250, Percent_Identity=38, Blast_Score=187, Evalue=5e-49,
Organism=Escherichia coli, GI1788131, Length=247, Percent_Identity=42.914979757085, Blast_Score=187, Evalue=6e-49,
Organism=Escherichia coli, GI87082359, Length=250, Percent_Identity=35.2, Blast_Score=164, Evalue=6e-42,
Organism=Escherichia coli, GI1786715, Length=247, Percent_Identity=35.2226720647773, Blast_Score=163, Evalue=9e-42,
Organism=Escherichia coli, GI1788581, Length=248, Percent_Identity=33.8709677419355, Blast_Score=142, Evalue=3e-35,
Organism=Escherichia coli, GI1789999, Length=255, Percent_Identity=32.9411764705882, Blast_Score=118, Evalue=3e-28,
Organism=Escherichia coli, GI1790752, Length=249, Percent_Identity=26.9076305220884, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI145693096, Length=226, Percent_Identity=28.3185840707965, Blast_Score=64, Evalue=8e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014757
- InterPro:   IPR005471
- InterPro:   IPR011991 [H]

Pfam domain/function: PF09339 HTH_IclR; PF01614 IclR [H]

EC number: NA

Molecular weight: Translated: 29215; Mature: 29084

Theoretical pI: Translated: 6.90; Mature: 6.90

Prosite motif: PS51077 HTH_ICLR ; PS51078 ICLR_ED

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQVEGHVQSLEKALKILEALAAAGEGIGLSELSRRLNLNKSTVYRMLSTLKAYGYVDQE
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCH
ETTEKYVLGLKILDLSGSLLERLDVRAVAHPYLKELADATQEVAHMVIRDGAEAVYIDKV
HHHHHHHHEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEC
EGNRTIRMHSQIGRRVALHSTAVGKAILAFLPEQEVVKIATDRGLPRFTPRTITTMASLQ
CCCCEEEEHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCHHHHHHHHHH
AELARVREQGYSVDDGENEEGIRCVGAPIFDHSGQVVAALSVSGLTISVTPERVPELGKM
HHHHHHHHCCCCCCCCCCCCCCEEECCCEECCCCCEEEEEEECCEEEEECHHHHHHHHHH
VGHAGQEISRQLGFKPATAERSFPSRLL
HHHHHHHHHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SQVEGHVQSLEKALKILEALAAAGEGIGLSELSRRLNLNKSTVYRMLSTLKAYGYVDQE
CCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCH
ETTEKYVLGLKILDLSGSLLERLDVRAVAHPYLKELADATQEVAHMVIRDGAEAVYIDKV
HHHHHHHHEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEC
EGNRTIRMHSQIGRRVALHSTAVGKAILAFLPEQEVVKIATDRGLPRFTPRTITTMASLQ
CCCCEEEEHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCHHHHHHHHHH
AELARVREQGYSVDDGENEEGIRCVGAPIFDHSGQVVAALSVSGLTISVTPERVPELGKM
HHHHHHHHCCCCCCCCCCCCCCEEECCCEECCCCCEEEEEEECCEEEEECHHHHHHHHHH
VGHAGQEISRQLGFKPATAERSFPSRLL
HHHHHHHHHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]