BacMap

Definition	Magnetospirillum magneticum AMB-1 chromosome, complete genome.
Accession	NC_007626
Length	4,967,148

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The map label for this gene is ccmA

Identifier: 83313279

GI number: 83313279

Start: 4592931

End: 4593584

Strand: Reverse

Name: ccmA

Synonym: amb4180

Alternate gene names: 83313279

Gene position: 4593584-4592931 (Counterclockwise)

Preceding gene: 83313281

Following gene: 83313278

Centisome position: 92.48

GC content: 70.95

Gene sequence:

>654_bases
ATGAGCGATTCGACCTTCTCCGCCAAGAATCTGGCCTGCGTGCGCGGCGGGCGCGTGGTGTTCGCCGGGCTGGGGTTCTC
CCTGTCGGCGGGCGGCGCCCTGGTTTTGCTGGGGCCCAACGGCTCGGGCAAGTCGAGCCTGCTGCGCGTGCTGGCCGGGC
TGTTGAAGCCCGCCCACGGGCTGCTGGCCTGGAACGGCGAGGCCCTGGCCGAGGACCCCGAGGCCCATGCGGCGCGCACC
CATTACCTGGGGCATCACGACGCGGTGAAGCCGGTGCTTTCGGTGGCCGAGAACCTGCGGTTCTGGGCGCACCTGCACGA
TCCCCACGCCGAGCGGGCCGGGCGGGCCGTGGACGCGGCGCTGTCGCGCTTCGGGCTGGCGCGGCTGGCCACCATTCCCG
GCAAGATGCTGTCGGCGGGGCAAAAACGCCGCACCAATCTGGCCCGCCTGCTGGCTGCTCCCAGCCCGCTGTGGCTGCTG
GACGAGCCGACCACGGCGCTGGACAAGGCCTCCATCAAGGTCCTCGAGGACGTGCTGGCCGAGCACCGGGCGGCGGGCGG
CATGGTGGTGCTGTCCACCCATGCCGACATCAACATGCCGGGCGCCCAGGAACTGCATCTGGATCAATTCGCCGTGGCGG
AGGAGCTTCCATGA

Upstream 100 bases:

>100_bases
CCGACCAACTTCATACGTCCTATGATCGGTCGGCCGTGGAAAAAGGCAATAGGGCAAACACCCCTCGTCAAGTGCCGCGA
TTTTTGCCATGGTGCGGGCC

Downstream 100 bases:

>100_bases
ACCGCTTTGTCGAGGTGGTTCGCCGCGACCTGCGTCTGGCCCTGCGCCAGGGCTCGGACAGCGTCATGGTGGTGACCTTC
TTCGTGCTGACCGTGGTGCT

Product: cytochrome c biogenesis protein CcmA

Products: NA

Alternate protein names: Heme exporter protein A

Number of amino acids: Translated: 217; Mature: 216

Protein sequence:

>217_residues
MSDSTFSAKNLACVRGGRVVFAGLGFSLSAGGALVLLGPNGSGKSSLLRVLAGLLKPAHGLLAWNGEALAEDPEAHAART
HYLGHHDAVKPVLSVAENLRFWAHLHDPHAERAGRAVDAALSRFGLARLATIPGKMLSAGQKRRTNLARLLAAPSPLWLL
DEPTTALDKASIKVLEDVLAEHRAAGGMVVLSTHADINMPGAQELHLDQFAVAEELP

Sequences:

>Translated_217_residues
MSDSTFSAKNLACVRGGRVVFAGLGFSLSAGGALVLLGPNGSGKSSLLRVLAGLLKPAHGLLAWNGEALAEDPEAHAART
HYLGHHDAVKPVLSVAENLRFWAHLHDPHAERAGRAVDAALSRFGLARLATIPGKMLSAGQKRRTNLARLLAAPSPLWLL
DEPTTALDKASIKVLEDVLAEHRAAGGMVVLSTHADINMPGAQELHLDQFAVAEELP
>Mature_216_residues
SDSTFSAKNLACVRGGRVVFAGLGFSLSAGGALVLLGPNGSGKSSLLRVLAGLLKPAHGLLAWNGEALAEDPEAHAARTH
YLGHHDAVKPVLSVAENLRFWAHLHDPHAERAGRAVDAALSRFGLARLATIPGKMLSAGQKRRTNLARLLAAPSPLWLLD
EPTTALDKASIKVLEDVLAEHRAAGGMVVLSTHADINMPGAQELHLDQFAVAEELP

Specific function: Part of the ABC transporter complex CcmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system

COG id: COG4133

COG function: function code O; ABC-type transport system involved in cytochrome c biogenesis, ATPase component

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain

Homologues:

Organism=Homo sapiens, GI116734710, Length=171, Percent_Identity=30.9941520467836, Blast_Score=80, Evalue=1e-15,
Organism=Homo sapiens, GI105990541, Length=178, Percent_Identity=28.6516853932584, Blast_Score=78, Evalue=7e-15,
Organism=Homo sapiens, GI27262624, Length=178, Percent_Identity=32.0224719101124, Blast_Score=76, Evalue=2e-14,
Organism=Homo sapiens, GI27262626, Length=178, Percent_Identity=32.0224719101124, Blast_Score=76, Evalue=2e-14,
Organism=Homo sapiens, GI46592964, Length=205, Percent_Identity=30.2439024390244, Blast_Score=76, Evalue=2e-14,
Organism=Homo sapiens, GI27881501, Length=173, Percent_Identity=27.7456647398844, Blast_Score=76, Evalue=2e-14,
Organism=Homo sapiens, GI30795238, Length=173, Percent_Identity=27.7456647398844, Blast_Score=76, Evalue=2e-14,
Organism=Homo sapiens, GI46592978, Length=205, Percent_Identity=30.2439024390244, Blast_Score=76, Evalue=2e-14,
Organism=Homo sapiens, GI46592915, Length=205, Percent_Identity=30.2439024390244, Blast_Score=76, Evalue=2e-14,
Organism=Homo sapiens, GI46592898, Length=205, Percent_Identity=30.2439024390244, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI46592971, Length=205, Percent_Identity=30.2439024390244, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI46592956, Length=205, Percent_Identity=30.2439024390244, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI27436953, Length=199, Percent_Identity=28.1407035175879, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI62526033, Length=174, Percent_Identity=31.0344827586207, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI150417984, Length=189, Percent_Identity=29.6296296296296, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI153792144, Length=172, Percent_Identity=29.0697674418605, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI31657092, Length=181, Percent_Identity=27.6243093922652, Blast_Score=68, Evalue=8e-12,
Organism=Homo sapiens, GI21536376, Length=195, Percent_Identity=28.2051282051282, Blast_Score=67, Evalue=8e-12,
Organism=Homo sapiens, GI45446740, Length=172, Percent_Identity=27.906976744186, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI47078218, Length=172, Percent_Identity=27.906976744186, Blast_Score=66, Evalue=2e-11,
Organism=Escherichia coli, GI87082064, Length=194, Percent_Identity=38.1443298969072, Blast_Score=121, Evalue=3e-29,
Organism=Escherichia coli, GI1790467, Length=196, Percent_Identity=29.5918367346939, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1786803, Length=197, Percent_Identity=31.9796954314721, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI1790739, Length=217, Percent_Identity=32.7188940092166, Blast_Score=77, Evalue=7e-16,
Organism=Escherichia coli, GI1789593, Length=194, Percent_Identity=29.3814432989691, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788165, Length=200, Percent_Identity=31.5, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1786345, Length=206, Percent_Identity=33.495145631068, Blast_Score=74, Evalue=5e-15,
Organism=Escherichia coli, GI1787370, Length=181, Percent_Identity=32.5966850828729, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI87081791, Length=165, Percent_Identity=33.3333333333333, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1786698, Length=188, Percent_Identity=29.7872340425532, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1787029, Length=200, Percent_Identity=30.5, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1789864, Length=216, Percent_Identity=27.3148148148148, Blast_Score=71, Evalue=5e-14,
Organism=Escherichia coli, GI1786563, Length=180, Percent_Identity=30, Blast_Score=70, Evalue=7e-14,
Organism=Escherichia coli, GI87081709, Length=183, Percent_Identity=28.9617486338798, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI87081782, Length=198, Percent_Identity=29.7979797979798, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1788761, Length=190, Percent_Identity=31.5789473684211, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1787041, Length=178, Percent_Identity=29.7752808988764, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1790544, Length=181, Percent_Identity=32.5966850828729, Blast_Score=68, Evalue=4e-13,
Organism=Escherichia coli, GI1789672, Length=182, Percent_Identity=30.2197802197802, Blast_Score=68, Evalue=5e-13,
Organism=Escherichia coli, GI48995001, Length=177, Percent_Identity=27.683615819209, Blast_Score=67, Evalue=7e-13,
Organism=Escherichia coli, GI1788450, Length=178, Percent_Identity=31.4606741573034, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787089, Length=199, Percent_Identity=31.6582914572864, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1786253, Length=152, Percent_Identity=36.1842105263158, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1786703, Length=182, Percent_Identity=30.7692307692308, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1788210, Length=179, Percent_Identity=29.608938547486, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1789032, Length=179, Percent_Identity=29.608938547486, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1789873, Length=190, Percent_Identity=28.4210526315789, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1786872, Length=165, Percent_Identity=31.5151515151515, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI87082267, Length=204, Percent_Identity=26.4705882352941, Blast_Score=64, Evalue=5e-12,
Organism=Escherichia coli, GI1788897, Length=191, Percent_Identity=29.8429319371728, Blast_Score=63, Evalue=1e-11,
Organism=Escherichia coli, GI1786319, Length=179, Percent_Identity=26.2569832402235, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI48994943, Length=191, Percent_Identity=26.7015706806283, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1787792, Length=205, Percent_Identity=29.2682926829268, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI2367384, Length=202, Percent_Identity=30.1980198019802, Blast_Score=61, Evalue=6e-11,
Organism=Escherichia coli, GI1786398, Length=187, Percent_Identity=27.807486631016, Blast_Score=61, Evalue=6e-11,
Organism=Escherichia coli, GI1787105, Length=189, Percent_Identity=31.7460317460317, Blast_Score=60, Evalue=8e-11,
Organism=Escherichia coli, GI87081834, Length=184, Percent_Identity=31.5217391304348, Blast_Score=60, Evalue=9e-11,
Organism=Caenorhabditis elegans, GI115533592, Length=200, Percent_Identity=31.5, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17565586, Length=192, Percent_Identity=26.5625, Blast_Score=75, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI115533608, Length=176, Percent_Identity=27.8409090909091, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI71992290, Length=194, Percent_Identity=29.3814432989691, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI212646699, Length=172, Percent_Identity=30.8139534883721, Blast_Score=68, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17541710, Length=187, Percent_Identity=28.8770053475936, Blast_Score=64, Evalue=5e-11,
Organism=Saccharomyces cerevisiae, GI6324498, Length=199, Percent_Identity=30.6532663316583, Blast_Score=66, Evalue=5e-12,
Organism=Drosophila melanogaster, GI19920532, Length=179, Percent_Identity=30.7262569832402, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24580930, Length=179, Percent_Identity=30.7262569832402, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24643674, Length=179, Percent_Identity=25.6983240223464, Blast_Score=75, Evalue=3e-14,
Organism=Drosophila melanogaster, GI24641342, Length=176, Percent_Identity=36.3636363636364, Blast_Score=70, Evalue=9e-13,
Organism=Drosophila melanogaster, GI28574744, Length=205, Percent_Identity=29.7560975609756, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI221500365, Length=193, Percent_Identity=26.4248704663212, Blast_Score=68, Evalue=4e-12,
Organism=Drosophila melanogaster, GI116007184, Length=193, Percent_Identity=26.4248704663212, Blast_Score=68, Evalue=4e-12,
Organism=Drosophila melanogaster, GI28574150, Length=160, Percent_Identity=29.375, Blast_Score=67, Evalue=7e-12,
Organism=Drosophila melanogaster, GI116007328, Length=160, Percent_Identity=29.375, Blast_Score=67, Evalue=7e-12,
Organism=Drosophila melanogaster, GI28573571, Length=205, Percent_Identity=29.2682926829268, Blast_Score=67, Evalue=9e-12,
Organism=Drosophila melanogaster, GI28573573, Length=178, Percent_Identity=31.4606741573034, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI28574533, Length=185, Percent_Identity=27.5675675675676, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI85724864, Length=192, Percent_Identity=27.0833333333333, Blast_Score=65, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24580555, Length=192, Percent_Identity=27.0833333333333, Blast_Score=65, Evalue=2e-11,
Organism=Drosophila melanogaster, GI85816269, Length=192, Percent_Identity=27.0833333333333, Blast_Score=65, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24580553, Length=192, Percent_Identity=27.0833333333333, Blast_Score=65, Evalue=2e-11,
Organism=Drosophila melanogaster, GI45550390, Length=198, Percent_Identity=29.2929292929293, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI24666092, Length=186, Percent_Identity=24.1935483870968, Blast_Score=64, Evalue=6e-11,
Organism=Drosophila melanogaster, GI24648314, Length=160, Percent_Identity=26.25, Blast_Score=64, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CCMA_MAGSA (Q2VZJ1)

Other databases:

- EMBL:   AP007255
- RefSeq:   YP_423543.1
- ProteinModelPortal:   Q2VZJ1
- SMR:   Q2VZJ1
- STRING:   Q2VZJ1
- GeneID:   3803845
- GenomeReviews:   AP007255_GR
- KEGG:   mag:amb4180
- eggNOG:   COG4133
- HOGENOM:   HBG758042
- OMA:   SARRGED
- PhylomeDB:   Q2VZJ1
- ProtClustDB:   PRK13539
- BioCyc:   MMAG342108:AMB4180-MONOMER
- HAMAP:   MF_01707
- InterPro:   IPR003439
- InterPro:   IPR005895
- InterPro:   IPR003593
- PANTHER:   PTHR19222:SF5
- SMART:   SM00382
- TIGRFAMs:   TIGR01189

Pfam domain/function: PF00005 ABC_tran

EC number: =3.6.3.41

Molecular weight: Translated: 22838; Mature: 22707

Theoretical pI: Translated: 7.93; Mature: 7.93

Prosite motif: PS00211 ABC_TRANSPORTER_1; PS50893 ABC_TRANSPORTER_2; PS51243 CCMA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDSTFSAKNLACVRGGRVVFAGLGFSLSAGGALVLLGPNGSGKSSLLRVLAGLLKPAHG
CCCCCCCCCCEEEEECCEEEEEECCEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCC
LLAWNGEALAEDPEAHAARTHYLGHHDAVKPVLSVAENLRFWAHLHDPHAERAGRAVDAA
EEEECCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHH
LSRFGLARLATIPGKMLSAGQKRRTNLARLLAAPSPLWLLDEPTTALDKASIKVLEDVLA
HHHHHHHHHHHCCHHHHHCCHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHH
EHRAAGGMVVLSTHADINMPGAQELHLDQFAVAEELP
HHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCC
>Mature Secondary Structure 
SDSTFSAKNLACVRGGRVVFAGLGFSLSAGGALVLLGPNGSGKSSLLRVLAGLLKPAHG
CCCCCCCCCEEEEECCEEEEEECCEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCC
LLAWNGEALAEDPEAHAARTHYLGHHDAVKPVLSVAENLRFWAHLHDPHAERAGRAVDAA
EEEECCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHH
LSRFGLARLATIPGKMLSAGQKRRTNLARLLAAPSPLWLLDEPTTALDKASIKVLEDVLA
HHHHHHHHHHHCCHHHHHCCHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHH
EHRAAGGMVVLSTHADINMPGAQELHLDQFAVAEELP
HHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA