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The map label for this gene is rimP

Identifier: 83313173

GI number: 83313173

Start: 4475998

End: 4476498

Strand: Reverse

Name: rimP

Synonym: amb4074

Alternate gene names: 83313173

Gene position: 4476498-4475998 (Counterclockwise)

Preceding gene: 83313174

Following gene: 83313172

Centisome position: 90.12

GC content: 64.67

Gene sequence:

>501_bases
ATGGATCTTCAAAGCCGTTTGGAGGCCCTGATCGCGCCGTCACTGGACGCCATGGGGTACGAGCTGGTGCGGGTGCAGCT
GCAGGGAAAGCAGCGGCTCACGCTTCAGATCATGGCGGACCGCAAGGACGGCGTGATGATGGCCGTGGACGATTGTGCCG
ACATCAGCCGCTCGGTTTCGGCCCTGCTGGATGTGGAGGACCCCATCTCGGCGGCCTATACCCTCGAGGTGAGCTCGCCG
GGCATCGACCGTCCGCTGACCCGGGCCAAGGACTTCGTCGCATGGGCGGGGTTCGAGGCCAAGATGGAATCGTGCCAGCC
CATCGACGGGCGCAAGCGGTTCCGGGGCAAGCTGCTGGGGCTGGACGAGGCGGGCGTCAATGTGCGTCTCGTCATCGAGG
CCGCCGGAGAGATTGCCATTCCGCTGGCTGATGTTCGCGGTGCCAAGCTGGTGCTGACCGACGAACTGATCGCCGCGACG
TTGAAAGACCAGGAAGAGTGA

Upstream 100 bases:

>100_bases
CACATTCTTGTATTCCCGTCAGACGGGATTGTGAGGGTGGGCCAGTGGCCCACTTTTTTCGTTTTTAGGGACCAACGTTA
AGGTCGCAGGCGACAGGGTT

Downstream 100 bases:

>100_bases
GGACGAAGTAGGACCATGGAACGGATCGCCGCACTGCCCCGCCCCGAACTCCTTCAGGTGGCCGACGCCGTCGCCCGCGA
CAAGGGCATCGACCGCGACG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 166; Mature: 166

Protein sequence:

>166_residues
MDLQSRLEALIAPSLDAMGYELVRVQLQGKQRLTLQIMADRKDGVMMAVDDCADISRSVSALLDVEDPISAAYTLEVSSP
GIDRPLTRAKDFVAWAGFEAKMESCQPIDGRKRFRGKLLGLDEAGVNVRLVIEAAGEIAIPLADVRGAKLVLTDELIAAT
LKDQEE

Sequences:

>Translated_166_residues
MDLQSRLEALIAPSLDAMGYELVRVQLQGKQRLTLQIMADRKDGVMMAVDDCADISRSVSALLDVEDPISAAYTLEVSSP
GIDRPLTRAKDFVAWAGFEAKMESCQPIDGRKRFRGKLLGLDEAGVNVRLVIEAAGEIAIPLADVRGAKLVLTDELIAAT
LKDQEE
>Mature_166_residues
MDLQSRLEALIAPSLDAMGYELVRVQLQGKQRLTLQIMADRKDGVMMAVDDCADISRSVSALLDVEDPISAAYTLEVSSP
GIDRPLTRAKDFVAWAGFEAKMESCQPIDGRKRFRGKLLGLDEAGVNVRLVIEAAGEIAIPLADVRGAKLVLTDELIAAT
LKDQEE

Specific function: Required for maturation of 30S ribosomal subunits

COG id: COG0779

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rimP family

Homologues:

Organism=Escherichia coli, GI226510978, Length=149, Percent_Identity=38.255033557047, Blast_Score=106, Evalue=7e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMP_MAGSA (Q2VZU7)

Other databases:

- EMBL:   AP007255
- RefSeq:   YP_423437.1
- ProteinModelPortal:   Q2VZU7
- SMR:   Q2VZU7
- STRING:   Q2VZU7
- GeneID:   3802823
- GenomeReviews:   AP007255_GR
- KEGG:   mag:amb4074
- NMPDR:   fig|342108.5.peg.3654
- eggNOG:   COG0779
- HOGENOM:   HBG668072
- OMA:   TIENCAA
- PhylomeDB:   Q2VZU7
- ProtClustDB:   CLSK2397268
- BioCyc:   MMAG342108:AMB4074-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01077
- InterPro:   IPR003728

Pfam domain/function: PF02576 DUF150

EC number: NA

Molecular weight: Translated: 18056; Mature: 18056

Theoretical pI: Translated: 4.40; Mature: 4.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLQSRLEALIAPSLDAMGYELVRVQLQGKQRLTLQIMADRKDGVMMAVDDCADISRSVS
CCHHHHHHHHHCCCCCCCCEEEEEEEECCCCEEEEEEEECCCCCEEEEEHHHHHHHHHHH
ALLDVEDPISAAYTLEVSSPGIDRPLTRAKDFVAWAGFEAKMESCQPIDGRKRFRGKLLG
HHHCCCCCCCEEEEEEECCCCCCCCHHHHHHHHEECCCHHHHHCCCCCCCHHHHCCEEEC
LDEAGVNVRLVIEAAGEIAIPLADVRGAKLVLTDELIAATLKDQEE
CCCCCCEEEEEEEECCCEEEEEECCCCCEEEEEHHHHHHHHCCCCC
>Mature Secondary Structure
MDLQSRLEALIAPSLDAMGYELVRVQLQGKQRLTLQIMADRKDGVMMAVDDCADISRSVS
CCHHHHHHHHHCCCCCCCCEEEEEEEECCCCEEEEEEEECCCCCEEEEEHHHHHHHHHHH
ALLDVEDPISAAYTLEVSSPGIDRPLTRAKDFVAWAGFEAKMESCQPIDGRKRFRGKLLG
HHHCCCCCCCEEEEEEECCCCCCCCHHHHHHHHEECCCHHHHHCCCCCCCHHHHCCEEEC
LDEAGVNVRLVIEAAGEIAIPLADVRGAKLVLTDELIAATLKDQEE
CCCCCCEEEEEEEECCCEEEEEECCCCCEEEEEHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA