| Definition | Magnetospirillum magneticum AMB-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007626 |
| Length | 4,967,148 |
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The map label for this gene is 83313158
Identifier: 83313158
GI number: 83313158
Start: 4458639
End: 4460123
Strand: Reverse
Name: 83313158
Synonym: amb4059
Alternate gene names: NA
Gene position: 4460123-4458639 (Counterclockwise)
Preceding gene: 83313159
Following gene: 83313157
Centisome position: 89.79
GC content: 66.87
Gene sequence:
>1485_bases GTGAAGGGGGTATCCGTGCGGAGGGGGTTTCGCAACGCGGTCCTGGGGGTGAGCACGGCGGCATTGCTGTCCGCGTGCTC GGTCATGCCCGAGGATCTGGCCGAGATCCGCGAGGAGATCAACCGGCATGCGCAATCCCTGCCCCAGGAGATGCTGAAAC GGCCGCTCTCGGTCGAGGACGCCATGAAGCTGGCGGTGGCCCACAATCTCGATGCACGGGTCAAGGAGCTGGAGGAGGTT CTGGCCGCCGGCAAGGCCGACATGTCGCTGTTCGCCATGCTGCCGGAACTGGCCGCCAAGGGACGATGGTCCAAGCGCGG CCCGAGGAAGCTGACTACGTCGAAGGATGTCGGCACCGGCGCCATCAGCAATGATTACAGCACCGGCGAGGATGTGATCG GCCGTACCGGCGACCTGACCGCCTCGTGGAACCTGGTGGATTTCGGCATCGCCCTGGTGCGTTCCGATCAGGAGGAGGAC AAGGTGGTCCTGGCGGCGGAAAAGCGCCGCCGCGCCCAGCACCTGCTGCTCCAGGACGTTCAGGCCGCCTATTGGAAGGC GGTGATCAACGAATTCGCCAACCGCAAGTACAGATCCCTGGAATCCCGGCTGGTCAAGTCGGTGGAGGACGCCGAGACCG CCGAGCGCACCAAGGTGGGCGATCCCATGCAGATGCTGGGGCATCAGCGCGCCATCGTCGACACCATGCGCCAGATCGCC GAGTTGCAGCGCCAGACCTCCACCGCCAAGGCCGATCTGGCCGGGCATATGGGGATGCCGTCGGCCTCGGCCTTCGAGCT GGCCGAGCTGAAGGACGATTCCTTCCTGTCGGCCGAGGACCCGGACTCGAGCGTCGAGGCCATGGAGGCGGTGGCCCTGG CCAACCGCCCGGAGCTGAAGTCCGAAGAGGTGCAGTTCCGCATCGACCGCAACGAGATCCGCACCGAATTGCTGAAGACC CTGCCGGGCATCGGCCCGTTCATGGGCGGGCACTACGATTCCAACAGCTTCATCAAGTACAACGCCTGGGCCGACGCCGG AGCCCACATGGCCTGGAACCTGATGGATATCGTCTCGGCGCCCAAGCGGATCAGCAACGCCCAGAACACCGCCGAGACCA CCCGCACCCGGCGCCTGGCCATGGGCATGGCGGTGCTGACCCAGGTGCATGTGGCCGACATCCAGGTCCGCCACGCGCTG AAGGAATACCGCCTGACCGAGCAGATGGCCGCCATCGACCGCCGCATCAGCGGGCTGGCCGCCAAGTCCAAGCAGGCGGG CAGCGGCAGCGCCATGGAGGAGATCAAGGCGGAGGCCTCGGGCATGCTGTCGACGCTGCGCCGCTTCATCCTCTATTCCG ACCTGCAAGGCGCCAAGGCCCGGCTCAAGGCCGCCCAGGGCATCGACCACGCCCCGCCGTCCGAGACCTTCACCGACACC CCGCCGCCGGAGACCACCGCCGATGCTGCCCCCCACGCCGGTTGA
Upstream 100 bases:
>100_bases ATCGACGGTTGCCTAACTATAACAATGGGATAGCGTGGGATCTTCATGAAACATTCAGACTCCTTCGGCCATAGTGCAGC GTCGGGTTCGAATGATTTGA
Downstream 100 bases:
>100_bases GCTGGAGGGGCTGGACGACAAGGCCCGGGCCGTCTCGGCCTGCCTGCGCGCCATGGGGCATGCGGTGGCGGCGACGGCGC TCAAGGATTCCTACCGCATG
Product: Outer membrane protein
Products: NA
Alternate protein names: Outer Membrane Protein; Efflux Outer Membrane Protein; Outer Membrane Protein-Like; Outer Membrane Efflux Protein Superfamily
Number of amino acids: Translated: 494; Mature: 494
Protein sequence:
>494_residues MKGVSVRRGFRNAVLGVSTAALLSACSVMPEDLAEIREEINRHAQSLPQEMLKRPLSVEDAMKLAVAHNLDARVKELEEV LAAGKADMSLFAMLPELAAKGRWSKRGPRKLTTSKDVGTGAISNDYSTGEDVIGRTGDLTASWNLVDFGIALVRSDQEED KVVLAAEKRRRAQHLLLQDVQAAYWKAVINEFANRKYRSLESRLVKSVEDAETAERTKVGDPMQMLGHQRAIVDTMRQIA ELQRQTSTAKADLAGHMGMPSASAFELAELKDDSFLSAEDPDSSVEAMEAVALANRPELKSEEVQFRIDRNEIRTELLKT LPGIGPFMGGHYDSNSFIKYNAWADAGAHMAWNLMDIVSAPKRISNAQNTAETTRTRRLAMGMAVLTQVHVADIQVRHAL KEYRLTEQMAAIDRRISGLAAKSKQAGSGSAMEEIKAEASGMLSTLRRFILYSDLQGAKARLKAAQGIDHAPPSETFTDT PPPETTADAAPHAG
Sequences:
>Translated_494_residues MKGVSVRRGFRNAVLGVSTAALLSACSVMPEDLAEIREEINRHAQSLPQEMLKRPLSVEDAMKLAVAHNLDARVKELEEV LAAGKADMSLFAMLPELAAKGRWSKRGPRKLTTSKDVGTGAISNDYSTGEDVIGRTGDLTASWNLVDFGIALVRSDQEED KVVLAAEKRRRAQHLLLQDVQAAYWKAVINEFANRKYRSLESRLVKSVEDAETAERTKVGDPMQMLGHQRAIVDTMRQIA ELQRQTSTAKADLAGHMGMPSASAFELAELKDDSFLSAEDPDSSVEAMEAVALANRPELKSEEVQFRIDRNEIRTELLKT LPGIGPFMGGHYDSNSFIKYNAWADAGAHMAWNLMDIVSAPKRISNAQNTAETTRTRRLAMGMAVLTQVHVADIQVRHAL KEYRLTEQMAAIDRRISGLAAKSKQAGSGSAMEEIKAEASGMLSTLRRFILYSDLQGAKARLKAAQGIDHAPPSETFTDT PPPETTADAAPHAG >Mature_494_residues MKGVSVRRGFRNAVLGVSTAALLSACSVMPEDLAEIREEINRHAQSLPQEMLKRPLSVEDAMKLAVAHNLDARVKELEEV LAAGKADMSLFAMLPELAAKGRWSKRGPRKLTTSKDVGTGAISNDYSTGEDVIGRTGDLTASWNLVDFGIALVRSDQEED KVVLAAEKRRRAQHLLLQDVQAAYWKAVINEFANRKYRSLESRLVKSVEDAETAERTKVGDPMQMLGHQRAIVDTMRQIA ELQRQTSTAKADLAGHMGMPSASAFELAELKDDSFLSAEDPDSSVEAMEAVALANRPELKSEEVQFRIDRNEIRTELLKT LPGIGPFMGGHYDSNSFIKYNAWADAGAHMAWNLMDIVSAPKRISNAQNTAETTRTRRLAMGMAVLTQVHVADIQVRHAL KEYRLTEQMAAIDRRISGLAAKSKQAGSGSAMEEIKAEASGMLSTLRRFILYSDLQGAKARLKAAQGIDHAPPSETFTDT PPPETTADAAPHAG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 54062; Mature: 54062
Theoretical pI: Translated: 6.76; Mature: 6.76
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 4.0 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKGVSVRRGFRNAVLGVSTAALLSACSVMPEDLAEIREEINRHAQSLPQEMLKRPLSVED CCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH AMKLAVAHNLDARVKELEEVLAAGKADMSLFAMLPELAAKGRWSKRGPRKLTTSKDVGTG HHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC AISNDYSTGEDVIGRTGDLTASWNLVDFGIALVRSDQEEDKVVLAAEKRRRAQHLLLQDV CCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHH QAAYWKAVINEFANRKYRSLESRLVKSVEDAETAERTKVGDPMQMLGHQRAIVDTMRQIA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHH ELQRQTSTAKADLAGHMGMPSASAFELAELKDDSFLSAEDPDSSVEAMEAVALANRPELK HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCC SEEVQFRIDRNEIRTELLKTLPGIGPFMGGHYDSNSFIKYNAWADAGAHMAWNLMDIVSA CCHHEEEECHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHH PKRISNAQNTAETTRTRRLAMGMAVLTQVHVADIQVRHALKEYRLTEQMAAIDRRISGLA HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AKSKQAGSGSAMEEIKAEASGMLSTLRRFILYSDLQGAKARLKAAQGIDHAPPSETFTDT HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCC PPPETTADAAPHAG CCCCCCCCCCCCCC >Mature Secondary Structure MKGVSVRRGFRNAVLGVSTAALLSACSVMPEDLAEIREEINRHAQSLPQEMLKRPLSVED CCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH AMKLAVAHNLDARVKELEEVLAAGKADMSLFAMLPELAAKGRWSKRGPRKLTTSKDVGTG HHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC AISNDYSTGEDVIGRTGDLTASWNLVDFGIALVRSDQEEDKVVLAAEKRRRAQHLLLQDV CCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHH QAAYWKAVINEFANRKYRSLESRLVKSVEDAETAERTKVGDPMQMLGHQRAIVDTMRQIA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHH ELQRQTSTAKADLAGHMGMPSASAFELAELKDDSFLSAEDPDSSVEAMEAVALANRPELK HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCC SEEVQFRIDRNEIRTELLKTLPGIGPFMGGHYDSNSFIKYNAWADAGAHMAWNLMDIVSA CCHHEEEECHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHH PKRISNAQNTAETTRTRRLAMGMAVLTQVHVADIQVRHALKEYRLTEQMAAIDRRISGLA HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AKSKQAGSGSAMEEIKAEASGMLSTLRRFILYSDLQGAKARLKAAQGIDHAPPSETFTDT HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCC PPPETTADAAPHAG CCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA