Click here to switch to the map view.

The map label for this gene is cph1 [H]

Identifier: 83312522

GI number: 83312522

Start: 3747605

End: 3750127

Strand: Reverse

Name: cph1 [H]

Synonym: amb3423

Alternate gene names: 83312522

Gene position: 3750127-3747605 (Counterclockwise)

Preceding gene: 83312525

Following gene: 83312521

Centisome position: 75.5

GC content: 66.71

Gene sequence:

>2523_bases
ATGGTGCCATGGTTGTTAGACCAACCATCCGCATGTATTCTTTTGCGCATGAACGAGCAGCAGCCGGAACCGCCCTCCAA
GGCGCCATCGCAAGGCGCCGGCCATGACGTGGCGGGTCTGACCCGGCCGGGCAATTCCTGGCGGGCCCGCTTGCTGGCGA
TGGTGGTGATTCCCTGTCTGGCGGCGCTGACCATCTGGCAGGCGGTGGGCTCGTATCGCAAGGAAATCGCCGATACCAAG
CATCTGGTCGAGGCGTTGACCCGGGTCTCGGAAGAGCACATCGCGGGCGTGATGCGCAGCATCGATCAGTTGCTGTCCGA
GATGGAGGAGGTGGCTCCCGACGGGCGGGTCGCCGACCCGCAGCGCGCCCTCGCCGCGCTCGCCAACCGCATGAAGTTCA
TCCCCGAGATCCGCAGCGCCGTGTTCATCGATGCCCGGGGGGTCATGGTGGCGGGGACCATGCCCGGCATGGCGGGCACC
GATGTGCATGACCGCGAGTACTTCAAGGCCCTGGCCGAGAATCCGACGCTTCCCATTTTCATCAGCGCACCGCTGCAAAG
CCGCGTGGTGACGGGAAACAGCATCATCGCGGCCCGTCCCATCCGCACGGAGGACGGCCGGCTGGCTGGCATGGTGGCCG
TTTCGGTCGATCCCAAGATCTTCGAGGACGAATTGCGCTCGGTCCTGCCCAGCGACGGCGGGCGCGCCACCTTGCTGCGC
GAGGACGGCATCATTTTGGCCCGGCTGCCCAACAGCGACGCCTGGCGCGGGGTCTCGGTGGCGAAGGGGGCCGTGATGGC
TCACCTGGCCACGGCGCCGCGGGGAACGCTTCTCGGAACTTCTGCCACCGACGGCCACGAACGGGTGATCGCCTATCGCC
GGCTGGAGAAGCATCCGCTGGTGGTGGCGGTGGGGATGTCGCTGACCGAGGTCCTGATGACCTGGTCCCGCGACACGGCG
CTGCAGGGCGGCGCGACCTTGCTTCTGGCCCTGGTGACCTTTGGTCTGGCCATGGTGTCGGACCGGAGGCTGGCCGAGCG
CCAGCGTGTCCAGCAGGCCCTGGCCGCCAGCGAGGCTCGCTACCGCATGCTGACCGAGCACTCCCCCGTGGGGGTGTTCC
AGGCCGATGCCGAGGGGACCTGCCTTTATGCCAACGAACGCTGGCTGGAACTGGCGGGCCGGGGACGAAGCGAACTCCTG
GGGGAGAAATGGTGCCAGGTGGTCCATCCCGACGACCGCGAGGCGGTGGCGGCTCTATGGCGCGGCCATGTGAACGGCCA
GGGCGAGTTTCTGGCGGAGATGCGCCTGATGCGCGGCGACGGCGCCATCCGCTGGGTGCGCGGCCACGCCGCGGCGCTGT
CGGTGGAGGAGGGGCCCGCCGGCGGGCTGGTGGGGACCATCGAGGACATCACCGCCGCCAAGGAGGCCGAGCGCCGTCTT
CGGCTGTCGGAGGAAAAATTCGCCAAGGCCTTCCGCGCCAGTCCCGACGCCATGGTGATCTCCCTGACCGAGGACGGGCG
CTATATCGATCTCAATGACGCTTTCGCCGACATGTTGGGCTATTCCCGCTTGGACCTCATGGGGCACACCGCCTTGGGAA
TGGGCGTCTGGGCTGACCCCGAGGACCGGGCCAGGCTGGTGGAGGCCGCCCGCCGCGACGGGCAGGTGGTCAATTTCGAG
ACCCGGCTGCGCCGCAAGAACGGCGAGGTCTTCGACACGCTGATCGCGGTGCAGAAGGTGGTTCTCGACGACCTGGACTG
CCTGCTGTTCATATGCCGCGACGTCAGCGAGCGCAAAGCCATGGAGGCCCGGTCCCGGGAACTGCTGGTCAGGCTTGATG
CCTCCAACAAGGAACTGGAGCAGTTCGCCTACGTCACCTCCCACGATCTGCAAGAACCGCTGCGCATGATCGCCGGCTAT
GCCCAGTTGATCGAGCGGCGCTATCGCGGGCGGCTGGATGACGATGCCGACGAGTTCATCGCCTTTCTGGTGGATGGCGC
CAAGCGCATGCAGGCCATGATCCGCGATCTGCTGGAATATTCCCGGGTCGAGCGGCTGGGCGGGCAGTTCGAGTCCTTTG
GGATGGGCGAGGTGCTGGACGACGTCATGGCCAATCTGGGGGCGGCGCTGACCGAGACCGGGGGCCGAATCGAAGTCGGT
CCCATGCCCCAGGTCACCGCCGATCGCTCCCAGATGCTGCGGCTGTTGCAGAACCTGATCGGCAATGCGCTGAAATATCG
GTCCCCCGATCGCCAACCCGTGGTCACGGTCACGGCCGAGCCGGGGGCGGGGGGCTGGGTCATCTCGGTGGCCGACAACG
GCATCGGCATCGAGCCCGCTTATTTCGACCGCATCTTCCTGGTTTTCCAGCGCCTGCACACCCGCGAGCATTACGACGGC
ACCGGCATTGGGCTGGCGATCTGCAAGAAGATCGTCGAGCGCCACGGCGGCCGGATCTGGGTCGAGTCCGAGCCTGATCG
GGGCAGCGTTTTCCGCTTTTCCCTTGCTGAAACCCAGGGTTAA

Upstream 100 bases:

>100_bases
GGCAGGGAGGTGCCGCCAAGCTAAACTGAACGGTTTGGTTTTAGCGAGTGGTGGGGGCGGAGGTCAATAGGCAGCGCTGA
TGGGCCGCTGATGCAGGGGT

Downstream 100 bases:

>100_bases
TTTTCTGCCTACGGCTTTGCGATGTGCCGTACCTCTCAGCTTTTCTTGCAAATAACTGGGTGGGGTGGCTCGGCCTTTTG
AGGTCGATCAATGATAAGTA

Product: Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation

Products: NA

Alternate protein names: Bacteriophytochrome cph1; Light-regulated histidine kinase 1 [H]

Number of amino acids: Translated: 840; Mature: 840

Protein sequence:

>840_residues
MVPWLLDQPSACILLRMNEQQPEPPSKAPSQGAGHDVAGLTRPGNSWRARLLAMVVIPCLAALTIWQAVGSYRKEIADTK
HLVEALTRVSEEHIAGVMRSIDQLLSEMEEVAPDGRVADPQRALAALANRMKFIPEIRSAVFIDARGVMVAGTMPGMAGT
DVHDREYFKALAENPTLPIFISAPLQSRVVTGNSIIAARPIRTEDGRLAGMVAVSVDPKIFEDELRSVLPSDGGRATLLR
EDGIILARLPNSDAWRGVSVAKGAVMAHLATAPRGTLLGTSATDGHERVIAYRRLEKHPLVVAVGMSLTEVLMTWSRDTA
LQGGATLLLALVTFGLAMVSDRRLAERQRVQQALAASEARYRMLTEHSPVGVFQADAEGTCLYANERWLELAGRGRSELL
GEKWCQVVHPDDREAVAALWRGHVNGQGEFLAEMRLMRGDGAIRWVRGHAAALSVEEGPAGGLVGTIEDITAAKEAERRL
RLSEEKFAKAFRASPDAMVISLTEDGRYIDLNDAFADMLGYSRLDLMGHTALGMGVWADPEDRARLVEAARRDGQVVNFE
TRLRRKNGEVFDTLIAVQKVVLDDLDCLLFICRDVSERKAMEARSRELLVRLDASNKELEQFAYVTSHDLQEPLRMIAGY
AQLIERRYRGRLDDDADEFIAFLVDGAKRMQAMIRDLLEYSRVERLGGQFESFGMGEVLDDVMANLGAALTETGGRIEVG
PMPQVTADRSQMLRLLQNLIGNALKYRSPDRQPVVTVTAEPGAGGWVISVADNGIGIEPAYFDRIFLVFQRLHTREHYDG
TGIGLAICKKIVERHGGRIWVESEPDRGSVFRFSLAETQG

Sequences:

>Translated_840_residues
MVPWLLDQPSACILLRMNEQQPEPPSKAPSQGAGHDVAGLTRPGNSWRARLLAMVVIPCLAALTIWQAVGSYRKEIADTK
HLVEALTRVSEEHIAGVMRSIDQLLSEMEEVAPDGRVADPQRALAALANRMKFIPEIRSAVFIDARGVMVAGTMPGMAGT
DVHDREYFKALAENPTLPIFISAPLQSRVVTGNSIIAARPIRTEDGRLAGMVAVSVDPKIFEDELRSVLPSDGGRATLLR
EDGIILARLPNSDAWRGVSVAKGAVMAHLATAPRGTLLGTSATDGHERVIAYRRLEKHPLVVAVGMSLTEVLMTWSRDTA
LQGGATLLLALVTFGLAMVSDRRLAERQRVQQALAASEARYRMLTEHSPVGVFQADAEGTCLYANERWLELAGRGRSELL
GEKWCQVVHPDDREAVAALWRGHVNGQGEFLAEMRLMRGDGAIRWVRGHAAALSVEEGPAGGLVGTIEDITAAKEAERRL
RLSEEKFAKAFRASPDAMVISLTEDGRYIDLNDAFADMLGYSRLDLMGHTALGMGVWADPEDRARLVEAARRDGQVVNFE
TRLRRKNGEVFDTLIAVQKVVLDDLDCLLFICRDVSERKAMEARSRELLVRLDASNKELEQFAYVTSHDLQEPLRMIAGY
AQLIERRYRGRLDDDADEFIAFLVDGAKRMQAMIRDLLEYSRVERLGGQFESFGMGEVLDDVMANLGAALTETGGRIEVG
PMPQVTADRSQMLRLLQNLIGNALKYRSPDRQPVVTVTAEPGAGGWVISVADNGIGIEPAYFDRIFLVFQRLHTREHYDG
TGIGLAICKKIVERHGGRIWVESEPDRGSVFRFSLAETQG
>Mature_840_residues
MVPWLLDQPSACILLRMNEQQPEPPSKAPSQGAGHDVAGLTRPGNSWRARLLAMVVIPCLAALTIWQAVGSYRKEIADTK
HLVEALTRVSEEHIAGVMRSIDQLLSEMEEVAPDGRVADPQRALAALANRMKFIPEIRSAVFIDARGVMVAGTMPGMAGT
DVHDREYFKALAENPTLPIFISAPLQSRVVTGNSIIAARPIRTEDGRLAGMVAVSVDPKIFEDELRSVLPSDGGRATLLR
EDGIILARLPNSDAWRGVSVAKGAVMAHLATAPRGTLLGTSATDGHERVIAYRRLEKHPLVVAVGMSLTEVLMTWSRDTA
LQGGATLLLALVTFGLAMVSDRRLAERQRVQQALAASEARYRMLTEHSPVGVFQADAEGTCLYANERWLELAGRGRSELL
GEKWCQVVHPDDREAVAALWRGHVNGQGEFLAEMRLMRGDGAIRWVRGHAAALSVEEGPAGGLVGTIEDITAAKEAERRL
RLSEEKFAKAFRASPDAMVISLTEDGRYIDLNDAFADMLGYSRLDLMGHTALGMGVWADPEDRARLVEAARRDGQVVNFE
TRLRRKNGEVFDTLIAVQKVVLDDLDCLLFICRDVSERKAMEARSRELLVRLDASNKELEQFAYVTSHDLQEPLRMIAGY
AQLIERRYRGRLDDDADEFIAFLVDGAKRMQAMIRDLLEYSRVERLGGQFESFGMGEVLDDVMANLGAALTETGGRIEVG
PMPQVTADRSQMLRLLQNLIGNALKYRSPDRQPVVTVTAEPGAGGWVISVADNGIGIEPAYFDRIFLVFQRLHTREHYDG
TGIGLAICKKIVERHGGRIWVESEPDRGSVFRFSLAETQG

Specific function: Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region. Has also a slight blue shift

COG id: COG0642

COG function: function code T; Signal transduction histidine kinase

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI145693157, Length=381, Percent_Identity=26.509186351706, Blast_Score=100, Evalue=6e-22,
Organism=Escherichia coli, GI48994928, Length=386, Percent_Identity=26.4248704663212, Blast_Score=84, Evalue=3e-17,
Organism=Escherichia coli, GI1790436, Length=278, Percent_Identity=27.3381294964029, Blast_Score=81, Evalue=4e-16,
Organism=Escherichia coli, GI1789149, Length=258, Percent_Identity=26.7441860465116, Blast_Score=77, Evalue=5e-15,
Organism=Escherichia coli, GI1786912, Length=219, Percent_Identity=27.8538812785388, Blast_Score=75, Evalue=2e-14,
Organism=Escherichia coli, GI1786600, Length=361, Percent_Identity=24.3767313019391, Blast_Score=73, Evalue=7e-14,
Organism=Escherichia coli, GI87081816, Length=259, Percent_Identity=25.8687258687259, Blast_Score=72, Evalue=2e-13,
Organism=Escherichia coli, GI1788549, Length=217, Percent_Identity=26.2672811059908, Blast_Score=70, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR003018
- InterPro:   IPR000014
- InterPro:   IPR013654
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515
- InterPro:   IPR003661
- InterPro:   IPR005467
- InterPro:   IPR009082 [H]

Pfam domain/function: PF01590 GAF; PF02518 HATPase_c; PF00512 HisKA; PF08446 PAS_2; PF00360 Phytochrome [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 92478; Mature: 92478

Theoretical pI: Translated: 5.82; Mature: 5.82

Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50109 HIS_KIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVPWLLDQPSACILLRMNEQQPEPPSKAPSQGAGHDVAGLTRPGNSWRARLLAMVVIPCL
CCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
AALTIWQAVGSYRKEIADTKHLVEALTRVSEEHIAGVMRSIDQLLSEMEEVAPDGRVADP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH
QRALAALANRMKFIPEIRSAVFIDARGVMVAGTMPGMAGTDVHDREYFKALAENPTLPIF
HHHHHHHHHHHHHHHHHHHEEEEECCCEEEEECCCCCCCCCCCHHHHHHHHHCCCCEEEE
ISAPLQSRVVTGNSIIAARPIRTEDGRLAGMVAVSVDPKIFEDELRSVLPSDGGRATLLR
EECCCCCEEECCCCEEEECCCCCCCCCEEEEEEEECCCHHHHHHHHHHCCCCCCCEEEEE
EDGIILARLPNSDAWRGVSVAKGAVMAHLATAPRGTLLGTSATDGHERVIAYRRLEKHPL
CCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHCCCCE
VVAVGMSLTEVLMTWSRDTALQGGATLLLALVTFGLAMVSDRRLAERQRVQQALAASEAR
EEEECHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YRMLTEHSPVGVFQADAEGTCLYANERWLELAGRGRSELLGEKWCQVVHPDDREAVAALW
HHHHHCCCCCCEEEECCCCEEEEECCHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHH
RGHVNGQGEFLAEMRLMRGDGAIRWVRGHAAALSVEEGPAGGLVGTIEDITAAKEAERRL
HCCCCCCHHHHHHHHHHCCCCCEEEEECCEEEEEECCCCCCCCEECHHHHHHHHHHHHHH
RLSEEKFAKAFRASPDAMVISLTEDGRYIDLNDAFADMLGYSRLDLMGHTALGMGVWADP
CCCHHHHHHHHHCCCCEEEEEEECCCCEEECHHHHHHHHCCHHHHHHCCHHHCCCCCCCC
EDRARLVEAARRDGQVVNFETRLRRKNGEVFDTLIAVQKVVLDDLDCLLFICRDVSERKA
HHHHHHHHHHHHCCCEEEHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
MEARSRELLVRLDASNKELEQFAYVTSHDLQEPLRMIAGYAQLIERRYRGRLDDDADEFI
HHHHCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
AFLVDGAKRMQAMIRDLLEYSRVERLGGQFESFGMGEVLDDVMANLGAALTETGGRIEVG
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCHHHHHHHHHHHHCHHHHCCCCEEEEC
PMPQVTADRSQMLRLLQNLIGNALKYRSPDRQPVVTVTAEPGAGGWVISVADNGIGIEPA
CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCEEEEEECCCCCCCHH
YFDRIFLVFQRLHTREHYDGTGIGLAICKKIVERHGGRIWVESEPDRGSVFRFSLAETQG
HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCEEEEEECCCCC
>Mature Secondary Structure
MVPWLLDQPSACILLRMNEQQPEPPSKAPSQGAGHDVAGLTRPGNSWRARLLAMVVIPCL
CCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
AALTIWQAVGSYRKEIADTKHLVEALTRVSEEHIAGVMRSIDQLLSEMEEVAPDGRVADP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH
QRALAALANRMKFIPEIRSAVFIDARGVMVAGTMPGMAGTDVHDREYFKALAENPTLPIF
HHHHHHHHHHHHHHHHHHHEEEEECCCEEEEECCCCCCCCCCCHHHHHHHHHCCCCEEEE
ISAPLQSRVVTGNSIIAARPIRTEDGRLAGMVAVSVDPKIFEDELRSVLPSDGGRATLLR
EECCCCCEEECCCCEEEECCCCCCCCCEEEEEEEECCCHHHHHHHHHHCCCCCCCEEEEE
EDGIILARLPNSDAWRGVSVAKGAVMAHLATAPRGTLLGTSATDGHERVIAYRRLEKHPL
CCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHCCCCE
VVAVGMSLTEVLMTWSRDTALQGGATLLLALVTFGLAMVSDRRLAERQRVQQALAASEAR
EEEECHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YRMLTEHSPVGVFQADAEGTCLYANERWLELAGRGRSELLGEKWCQVVHPDDREAVAALW
HHHHHCCCCCCEEEECCCCEEEEECCHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHH
RGHVNGQGEFLAEMRLMRGDGAIRWVRGHAAALSVEEGPAGGLVGTIEDITAAKEAERRL
HCCCCCCHHHHHHHHHHCCCCCEEEEECCEEEEEECCCCCCCCEECHHHHHHHHHHHHHH
RLSEEKFAKAFRASPDAMVISLTEDGRYIDLNDAFADMLGYSRLDLMGHTALGMGVWADP
CCCHHHHHHHHHCCCCEEEEEEECCCCEEECHHHHHHHHCCHHHHHHCCHHHCCCCCCCC
EDRARLVEAARRDGQVVNFETRLRRKNGEVFDTLIAVQKVVLDDLDCLLFICRDVSERKA
HHHHHHHHHHHHCCCEEEHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
MEARSRELLVRLDASNKELEQFAYVTSHDLQEPLRMIAGYAQLIERRYRGRLDDDADEFI
HHHHCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
AFLVDGAKRMQAMIRDLLEYSRVERLGGQFESFGMGEVLDDVMANLGAALTETGGRIEVG
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCHHHHHHHHHHHHCHHHHCCCCEEEEC
PMPQVTADRSQMLRLLQNLIGNALKYRSPDRQPVVTVTAEPGAGGWVISVADNGIGIEPA
CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCEEEEEECCCCCCCHH
YFDRIFLVFQRLHTREHYDGTGIGLAICKKIVERHGGRIWVESEPDRGSVFRFSLAETQG
HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 9109482; 9278513; 10828948 [H]