| Definition | Magnetospirillum magneticum AMB-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007626 |
| Length | 4,967,148 |
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The map label for this gene is yjbG [H]
Identifier: 83311927
GI number: 83311927
Start: 3021697
End: 3024333
Strand: Reverse
Name: yjbG [H]
Synonym: amb2828
Alternate gene names: 83311927
Gene position: 3024333-3021697 (Counterclockwise)
Preceding gene: 83311930
Following gene: 83311926
Centisome position: 60.89
GC content: 66.29
Gene sequence:
>2637_bases ATGCTCGAGTCCCTCGGCGTAGCGGATCTCGGCGCCGATGGAGATGGGGAAGTAAAGCCCGGCCGTGTGTTCGTAGGCGT GGGACAGGGGCAGAAAGGACAGGAACACCTCGTCCTCCAGTCCAAGCTCCCGCAGAACGTCGGTGGCGCCCATGCAATTG CACAAGATGGCGCCGTGCGAGAGCATCACCCCCTTGGGCACGCCGCCGGTGCCCGAGGTGTAGATCAGGCAGGCGGTGTC GGTGCGCTTCTGTGCCGCGACGATGGCTTGGATGGCGGCCTCGCCGCCTTGCCCCAGGCCGAGGACCGAGTCCCAGGAAT GCACGTCCACGCCGGGCGACTGGGCGAGGGCGAGGGGCTCCATGGAAATGATGGCCGGCGCCTGGGCCGAGCGGGTGGCG GCGGGCAGCACCCGCTCCGCCAGGGCCCGGGTCGAGACGATCACCAGCCGCGCGCCGCAATTGTCCAGGATGTGCAGATG GTCGGCCACGGTATTGGTGGTGTAGGCCGGCACGCTGATGCCGCCGGCGGCCATGATGGCCAGATCGGCCAGCGCCCATT CGGGGCGGTTCTCGGCCACCAGCATGACCCGGTCACCCTGGCCGAGCCCCAGGGCGCGCAAGCCGGCCGCCAGGGCCAGC ACCCGGGCCGCGGCGTCGCGCCAGGACAAGGCGTGCCAGTGTCCATCGGCCTTGTGGCCCAGGAATGGGCGCTGGCCCAG GCGCCCGGCCTGCCCGAGAAACATGGCCGGCAGGCTGGTCTGCGCCGCGAACTCTACCTCCATACGTCGAAACTCCCTGT TCGCGCGATGGCGCCATCCTTATATTGTGTCGCAACAAGGAGACAGCGCATGACCTTTGTAGCACCGGCGGACGATCTCG GCACCCTTCCCGAATGGGACCTTTCCGACCTTTACCCCGCTCCGGATTCGCCCGAGCTGGAGGCCGACCTGCAGGCGGCC GACGCGGCGGCCCAGGCCTTCGAGACCGCCTATGCCGGAAAGCTGGCCGAGCTGCCCGGAGCGCAATTCGGCGCCGCCAT CGCCGAGTGGGAGCGTATCGGCCAGATCATCTACCGTGCCATGTCCTACGCCCAACTGCTCTATTCCGGCGATGTCTCCG ACTCCGAGCGCGGCCGGTTCTACCAGGGCATGCAGGAGCGGGTGACGGGCATCACCACCCGCACCCTGTTCTTCACCCTG GAGATCAACCGTCTCGACGACACGGTGCTGGCCGAGAAGCTGAAGTCCCCCGAGACGGCGCATTACGCCTCTTGGTTGCG CGATACCCGGGTGTTCCGTCCGCACCAGCTGTCGGACGAGGCCGAGAAGATGCTGCACGAGCTGCACGTGGTCGGCACGG CGGCCTGGAACCGGCTGTTCGACGAGACCATGGCCCGGCTGCGCTTTCCCCTGGACGGCCGGGAGGTGACCTCGGCCGAG GTTCTCAATTGTCTCAGCGACAAGGACGGCGCCCGGCGCAAGGCCGCCGCCAAATCCCTGGGCAAGGTGCTGGGCGACAA TGCGCCGCTGTTCGCGCTGATCACCAACACGCTGGCCAAGGAAAAGGAGATCGAGGACAAGTGGCGCAACTACGCCCGGC CCCAATCCTTCCGCAACCTGTCCAATCAGGTGGAGGACGGGGTGGTCGATGCCCTGGTCGAAGCGGTCAAGGGCTGCTTT CCCCAATTGTCCCACCGCTATTACAAGCTGAAGGCTAAGTGGTTCGGCGTCGACGTGATGGATTACTGGGACCGCAACGC GCCCCTGCCCGACGACGACGACCGCAAATATACCTGGGAGCAGGCCCGCGACACGGTTCTCGGCGCCTATGGGGCCTTCT CGCCCGACATGGCGGAGGTGGGCAAGCGCTTCTTCGACAACAACTGGATCGACGCGCCGGTGCGTCCGGGCAAGTCGCCC GGCGCCTTCGCCCATCCGACGGTGCCCACTGTCCATCCCTATCTGCTGGTCAATTTCCTGGGCAAGTCCCGCGACGTGAT GACCCTGGCCCATGAACTGGGCCACGGCGTGCATCAGGTGCTGGCCGGCGGCCAGGGATTGCTGATGTCCGACACGCCGC TGACCCTGGCGGAGACGGCTTCGGTGTTCGGCGAGATGCTGACCTTCCGCGCCATGCTCGAACGCGAGACGTCCCCCAAG AGCCGCCGCATCATGCTGGCCTCGAAGGTGGAGGACATGATCAACACCGTGGTGCGCCAGGTGGCGTTCTACCAGTTCGA ATCCCTGCTGCATGACGAGCGCCGCCGGGGCGAATTGTCGCCCGAGCGCATCGGCGAATTGTGGATGAGCGTCCAGGCCG ACAGCCTGGGCCCGGCCTTCCGCTTCGATGACGAGTACCGGCATTTCTGGACCTATATCCCTCATTTCGTCCATTCGCCG TTCTACGTCTATGCCTATGCCTTCGGCGATTGCCTGGTGAACTCGCTGTATTCCGTCCATGCCAAGGGCGGACTGGCCGA TTTCCCCGCCAAGTATCTCGATATGCTGCGGGCCGGCGGCACCCTGCGTCACCAGGACCTGCTGGCGCCCTTCGGCCTGG ATGCCGGAGACCCGCAGTTCTGGCGCCAGGGCCTGGACGTGGTCATCGGCTTCATCGACGAACTGGAGGCCATGTAG
Upstream 100 bases:
>100_bases CCCGCGTCAGCCCCTTGAGAATGCGGGTACGCATGGTCTCGTAGAGGCGGGGCACGGCGGTCATGATTGTGGGCGACACT TCGGCCATGTTGGCGGCCAA
Downstream 100 bases:
>100_bases GCAAGGCGCGGGCGGCTTCCCATATGGCAGGGAGCAAAAGCCTGCCATAGGGAGACCGTCATGGATGAAAAGCGTCGCCA GTTCCTGACCCTGGGGGCCG
Product: oligoendopeptidase F-like protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 878; Mature: 878
Protein sequence:
>878_residues MLESLGVADLGADGDGEVKPGRVFVGVGQGQKGQEHLVLQSKLPQNVGGAHAIAQDGAVREHHPLGHAAGARGVDQAGGV GALLCRDDGLDGGLAALPQAEDRVPGMHVHAGRLGEGEGLHGNDGRRLGRAGGGGQHPLRQGPGRDDHQPRAAIVQDVQM VGHGIGGVGRHADAAGGHDGQIGQRPFGAVLGHQHDPVTLAEPQGAQAGRQGQHPGRGVAPGQGVPVSIGLVAQEWALAQ APGLPEKHGRQAGLRRELYLHTSKLPVRAMAPSLYCVATRRQRMTFVAPADDLGTLPEWDLSDLYPAPDSPELEADLQAA DAAAQAFETAYAGKLAELPGAQFGAAIAEWERIGQIIYRAMSYAQLLYSGDVSDSERGRFYQGMQERVTGITTRTLFFTL EINRLDDTVLAEKLKSPETAHYASWLRDTRVFRPHQLSDEAEKMLHELHVVGTAAWNRLFDETMARLRFPLDGREVTSAE VLNCLSDKDGARRKAAAKSLGKVLGDNAPLFALITNTLAKEKEIEDKWRNYARPQSFRNLSNQVEDGVVDALVEAVKGCF PQLSHRYYKLKAKWFGVDVMDYWDRNAPLPDDDDRKYTWEQARDTVLGAYGAFSPDMAEVGKRFFDNNWIDAPVRPGKSP GAFAHPTVPTVHPYLLVNFLGKSRDVMTLAHELGHGVHQVLAGGQGLLMSDTPLTLAETASVFGEMLTFRAMLERETSPK SRRIMLASKVEDMINTVVRQVAFYQFESLLHDERRRGELSPERIGELWMSVQADSLGPAFRFDDEYRHFWTYIPHFVHSP FYVYAYAFGDCLVNSLYSVHAKGGLADFPAKYLDMLRAGGTLRHQDLLAPFGLDAGDPQFWRQGLDVVIGFIDELEAM
Sequences:
>Translated_878_residues MLESLGVADLGADGDGEVKPGRVFVGVGQGQKGQEHLVLQSKLPQNVGGAHAIAQDGAVREHHPLGHAAGARGVDQAGGV GALLCRDDGLDGGLAALPQAEDRVPGMHVHAGRLGEGEGLHGNDGRRLGRAGGGGQHPLRQGPGRDDHQPRAAIVQDVQM VGHGIGGVGRHADAAGGHDGQIGQRPFGAVLGHQHDPVTLAEPQGAQAGRQGQHPGRGVAPGQGVPVSIGLVAQEWALAQ APGLPEKHGRQAGLRRELYLHTSKLPVRAMAPSLYCVATRRQRMTFVAPADDLGTLPEWDLSDLYPAPDSPELEADLQAA DAAAQAFETAYAGKLAELPGAQFGAAIAEWERIGQIIYRAMSYAQLLYSGDVSDSERGRFYQGMQERVTGITTRTLFFTL EINRLDDTVLAEKLKSPETAHYASWLRDTRVFRPHQLSDEAEKMLHELHVVGTAAWNRLFDETMARLRFPLDGREVTSAE VLNCLSDKDGARRKAAAKSLGKVLGDNAPLFALITNTLAKEKEIEDKWRNYARPQSFRNLSNQVEDGVVDALVEAVKGCF PQLSHRYYKLKAKWFGVDVMDYWDRNAPLPDDDDRKYTWEQARDTVLGAYGAFSPDMAEVGKRFFDNNWIDAPVRPGKSP GAFAHPTVPTVHPYLLVNFLGKSRDVMTLAHELGHGVHQVLAGGQGLLMSDTPLTLAETASVFGEMLTFRAMLERETSPK SRRIMLASKVEDMINTVVRQVAFYQFESLLHDERRRGELSPERIGELWMSVQADSLGPAFRFDDEYRHFWTYIPHFVHSP FYVYAYAFGDCLVNSLYSVHAKGGLADFPAKYLDMLRAGGTLRHQDLLAPFGLDAGDPQFWRQGLDVVIGFIDELEAM >Mature_878_residues MLESLGVADLGADGDGEVKPGRVFVGVGQGQKGQEHLVLQSKLPQNVGGAHAIAQDGAVREHHPLGHAAGARGVDQAGGV GALLCRDDGLDGGLAALPQAEDRVPGMHVHAGRLGEGEGLHGNDGRRLGRAGGGGQHPLRQGPGRDDHQPRAAIVQDVQM VGHGIGGVGRHADAAGGHDGQIGQRPFGAVLGHQHDPVTLAEPQGAQAGRQGQHPGRGVAPGQGVPVSIGLVAQEWALAQ APGLPEKHGRQAGLRRELYLHTSKLPVRAMAPSLYCVATRRQRMTFVAPADDLGTLPEWDLSDLYPAPDSPELEADLQAA DAAAQAFETAYAGKLAELPGAQFGAAIAEWERIGQIIYRAMSYAQLLYSGDVSDSERGRFYQGMQERVTGITTRTLFFTL EINRLDDTVLAEKLKSPETAHYASWLRDTRVFRPHQLSDEAEKMLHELHVVGTAAWNRLFDETMARLRFPLDGREVTSAE VLNCLSDKDGARRKAAAKSLGKVLGDNAPLFALITNTLAKEKEIEDKWRNYARPQSFRNLSNQVEDGVVDALVEAVKGCF PQLSHRYYKLKAKWFGVDVMDYWDRNAPLPDDDDRKYTWEQARDTVLGAYGAFSPDMAEVGKRFFDNNWIDAPVRPGKSP GAFAHPTVPTVHPYLLVNFLGKSRDVMTLAHELGHGVHQVLAGGQGLLMSDTPLTLAETASVFGEMLTFRAMLERETSPK SRRIMLASKVEDMINTVVRQVAFYQFESLLHDERRRGELSPERIGELWMSVQADSLGPAFRFDDEYRHFWTYIPHFVHSP FYVYAYAFGDCLVNSLYSVHAKGGLADFPAKYLDMLRAGGTLRHQDLLAPFGLDAGDPQFWRQGLDVVIGFIDELEAM
Specific function: Unknown
COG id: COG1164
COG function: function code E; Oligoendopeptidase F
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase M3B family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001567 - InterPro: IPR004438 - InterPro: IPR013647 [H]
Pfam domain/function: PF01432 Peptidase_M3; PF08439 Peptidase_M3_N [H]
EC number: NA
Molecular weight: Translated: 95984; Mature: 95984
Theoretical pI: Translated: 6.27; Mature: 6.27
Prosite motif: PS00639 THIOL_PROTEASE_HIS ; PS00142 ZINC_PROTEASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLESLGVADLGADGDGEVKPGRVFVGVGQGQKGQEHLVLQSKLPQNVGGAHAIAQDGAVR CCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHCCCCCCCHHHHHCCCCCC EHHPLGHAAGARGVDQAGGVGALLCRDDGLDGGLAALPQAEDRVPGMHVHAGRLGEGEGL CCCCCCCHHCCCCCCCCCCCEEEEEECCCCCCCHHCCCCCHHCCCCCEEECCCCCCCCCC HGNDGRRLGRAGGGGQHPLRQGPGRDDHQPRAAIVQDVQMVGHGIGGVGRHADAAGGHDG CCCCCCEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC QIGQRPFGAVLGHQHDPVTLAEPQGAQAGRQGQHPGRGVAPGQGVPVSIGLVAQEWALAQ CCCCCCHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHC APGLPEKHGRQAGLRRELYLHTSKLPVRAMAPSLYCVATRRQRMTFVAPADDLGTLPEWD CCCCCHHHCHHHCCHHHEEEECCCCCHHHHCCCCEEEECCCCCEEEECCCHHCCCCCCCC LSDLYPAPDSPELEADLQAADAAAQAFETAYAGKLAELPGAQFGAAIAEWERIGQIIYRA HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH MSYAQLLYSGDVSDSERGRFYQGMQERVTGITTRTLFFTLEINRLDDTVLAEKLKSPETA HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCEEEEEEEEEEECCCCHHHHHHHHCCCCHH HYASWLRDTRVFRPHQLSDEAEKMLHELHVVGTAAWNRLFDETMARLRFPLDGREVTSAE HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH VLNCLSDKDGARRKAAAKSLGKVLGDNAPLFALITNTLAKEKEIEDKWRNYARPQSFRNL HHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH SNQVEDGVVDALVEAVKGCFPQLSHRYYKLKAKWFGVDVMDYWDRNAPLPDDDDRKYTWE HHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEECCHHHHHHCCCCCCCCCCCCCEEHH QARDTVLGAYGAFSPDMAEVGKRFFDNNWIDAPVRPGKSPGAFAHPTVPTVHPYLLVNFL HHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH GKSRDVMTLAHELGHGVHQVLAGGQGLLMSDTPLTLAETASVFGEMLTFRAMLERETSPK CCCCHHHHHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC SRRIMLASKVEDMINTVVRQVAFYQFESLLHDERRRGELSPERIGELWMSVQADSLGPAF HHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCC RFDDEYRHFWTYIPHFVHSPFYVYAYAFGDCLVNSLYSVHAKGGLADFPAKYLDMLRAGG CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCC TLRHQDLLAPFGLDAGDPQFWRQGLDVVIGFIDELEAM CCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MLESLGVADLGADGDGEVKPGRVFVGVGQGQKGQEHLVLQSKLPQNVGGAHAIAQDGAVR CCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHCCCCCCCHHHHHCCCCCC EHHPLGHAAGARGVDQAGGVGALLCRDDGLDGGLAALPQAEDRVPGMHVHAGRLGEGEGL CCCCCCCHHCCCCCCCCCCCEEEEEECCCCCCCHHCCCCCHHCCCCCEEECCCCCCCCCC HGNDGRRLGRAGGGGQHPLRQGPGRDDHQPRAAIVQDVQMVGHGIGGVGRHADAAGGHDG CCCCCCEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC QIGQRPFGAVLGHQHDPVTLAEPQGAQAGRQGQHPGRGVAPGQGVPVSIGLVAQEWALAQ CCCCCCHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHC APGLPEKHGRQAGLRRELYLHTSKLPVRAMAPSLYCVATRRQRMTFVAPADDLGTLPEWD CCCCCHHHCHHHCCHHHEEEECCCCCHHHHCCCCEEEECCCCCEEEECCCHHCCCCCCCC LSDLYPAPDSPELEADLQAADAAAQAFETAYAGKLAELPGAQFGAAIAEWERIGQIIYRA HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH MSYAQLLYSGDVSDSERGRFYQGMQERVTGITTRTLFFTLEINRLDDTVLAEKLKSPETA HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCEEEEEEEEEEECCCCHHHHHHHHCCCCHH HYASWLRDTRVFRPHQLSDEAEKMLHELHVVGTAAWNRLFDETMARLRFPLDGREVTSAE HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH VLNCLSDKDGARRKAAAKSLGKVLGDNAPLFALITNTLAKEKEIEDKWRNYARPQSFRNL HHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH SNQVEDGVVDALVEAVKGCFPQLSHRYYKLKAKWFGVDVMDYWDRNAPLPDDDDRKYTWE HHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEECCHHHHHHCCCCCCCCCCCCCEEHH QARDTVLGAYGAFSPDMAEVGKRFFDNNWIDAPVRPGKSPGAFAHPTVPTVHPYLLVNFL HHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH GKSRDVMTLAHELGHGVHQVLAGGQGLLMSDTPLTLAETASVFGEMLTFRAMLERETSPK CCCCHHHHHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC SRRIMLASKVEDMINTVVRQVAFYQFESLLHDERRRGELSPERIGELWMSVQADSLGPAF HHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCC RFDDEYRHFWTYIPHFVHSPFYVYAYAFGDCLVNSLYSVHAKGGLADFPAKYLDMLRAGG CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCC TLRHQDLLAPFGLDAGDPQFWRQGLDVVIGFIDELEAM CCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]