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The map label for this gene is sigW [H]

Identifier: 83311915

GI number: 83311915

Start: 3006359

End: 3007024

Strand: Reverse

Name: sigW [H]

Synonym: amb2816

Alternate gene names: 83311915

Gene position: 3007024-3006359 (Counterclockwise)

Preceding gene: 83311918

Following gene: 83311914

Centisome position: 60.54

GC content: 66.07

Gene sequence:

>666_bases
ATGATTTTCCGCATGGATCGACTGTTCCGGGCCGTTCAATCCAGTGATGACGCTTGGCGTGGAGGTGGTTTGGACCGGGC
TGGGCGGCTGCGTCCCGAGATGGATGCGGCCAGTGATGACGACTTGCTGCGGGCGATCGCCCAGGGGGACCGCCGGAGCT
TCCAGCGGCTGATGGAGCGTCATGTCCGCGCCATGCTGGCCCTCTCCACCCGGGTGCTGCGCAATCCCGACGATGCCGAC
GAGATTGTGCAGGAGGCCTTCCTGAAGGTCTGGACTCTGGCATCTGGCTGGCAGTCGGATCGCGAGGCCAAGTTTTCCAC
CTGGCTTTATCGGGTGGTGCTGAACGCCAGTCTCGACCGCCTGCGCCGGGCCCGCTTCGTGGCGGAGGAGGAGGCGGACG
AGCCCGTCGACCCCGCGCCGGGCGGGCTGGACCGGGTGGTGGCGCGCCAGAGGGAGCGTCTGGTCTCGACCGCCATGGCC
GAGATGCCGGCCAGACAACGCGAGGCGTTGTCGCTATATTATTTCAGCGATCTGACCGCTCCCGAGGCGGCACGGGTCCT
GGATTTGTCGCTGAGCGCCATGGAAGCCCTGCTGGTAAGGGGCAAGCGCAGCCTGAGGACAGCCCTTGCCCGCCTGGGAA
TTCGGGGCATTGGAGACGTGACATGA

Upstream 100 bases:

>100_bases
CGTTGATCTGGTGGAAAATGGTTGTGCCGTCTTATCCCTCGTGTCCGACGGTCCCGGCAGTTTTTGCCGTGGTCCCGGGC
AGAATTTGCCGGGTGGGCGC

Downstream 100 bases:

>100_bases
GTGGCGATGAACTGGACGAAATGATGCGCAGGCTGGCCCCGCCGCCGGAGGTGACCTCCGATCGGGTCGCCCGGGTCATG
GGGAATGTCATGGCCCGTCT

Product: RNA polymerase sigma factor

Products: NA

Alternate protein names: Sigma-W factor [H]

Number of amino acids: Translated: 221; Mature: 221

Protein sequence:

>221_residues
MIFRMDRLFRAVQSSDDAWRGGGLDRAGRLRPEMDAASDDDLLRAIAQGDRRSFQRLMERHVRAMLALSTRVLRNPDDAD
EIVQEAFLKVWTLASGWQSDREAKFSTWLYRVVLNASLDRLRRARFVAEEEADEPVDPAPGGLDRVVARQRERLVSTAMA
EMPARQREALSLYYFSDLTAPEAARVLDLSLSAMEALLVRGKRSLRTALARLGIRGIGDVT

Sequences:

>Translated_221_residues
MIFRMDRLFRAVQSSDDAWRGGGLDRAGRLRPEMDAASDDDLLRAIAQGDRRSFQRLMERHVRAMLALSTRVLRNPDDAD
EIVQEAFLKVWTLASGWQSDREAKFSTWLYRVVLNASLDRLRRARFVAEEEADEPVDPAPGGLDRVVARQRERLVSTAMA
EMPARQREALSLYYFSDLTAPEAARVLDLSLSAMEALLVRGKRSLRTALARLGIRGIGDVT
>Mature_221_residues
MIFRMDRLFRAVQSSDDAWRGGGLDRAGRLRPEMDAASDDDLLRAIAQGDRRSFQRLMERHVRAMLALSTRVLRNPDDAD
EIVQEAFLKVWTLASGWQSDREAKFSTWLYRVVLNASLDRLRRARFVAEEEADEPVDPAPGGLDRVVARQRERLVSTAMA
EMPARQREALSLYYFSDLTAPEAARVLDLSLSAMEALLVRGKRSLRTALARLGIRGIGDVT

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. Sigma-W controls genes involved in transport processes and detoxification [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014294
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 24975; Mature: 24975

Theoretical pI: Translated: 9.68; Mature: 9.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIFRMDRLFRAVQSSDDAWRGGGLDRAGRLRPEMDAASDDDLLRAIAQGDRRSFQRLMER
CCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCHHHHHHHHHHH
HVRAMLALSTRVLRNPDDADEIVQEAFLKVWTLASGWQSDREAKFSTWLYRVVLNASLDR
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
LRRARFVAEEEADEPVDPAPGGLDRVVARQRERLVSTAMAEMPARQREALSLYYFSDLTA
HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCC
PEAARVLDLSLSAMEALLVRGKRSLRTALARLGIRGIGDVT
HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MIFRMDRLFRAVQSSDDAWRGGGLDRAGRLRPEMDAASDDDLLRAIAQGDRRSFQRLMER
CCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCHHHHHHHHHHH
HVRAMLALSTRVLRNPDDADEIVQEAFLKVWTLASGWQSDREAKFSTWLYRVVLNASLDR
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
LRRARFVAEEEADEPVDPAPGGLDRVVARQRERLVSTAMAEMPARQREALSLYYFSDLTA
HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCC
PEAARVLDLSLSAMEALLVRGKRSLRTALARLGIRGIGDVT
HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9274029; 9384377; 12207695 [H]