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The map label for this gene is ydaM [H]

Identifier: 83311851

GI number: 83311851

Start: 2937896

End: 2939155

Strand: Reverse

Name: ydaM [H]

Synonym: amb2752

Alternate gene names: 83311851

Gene position: 2939155-2937896 (Counterclockwise)

Preceding gene: 83311855

Following gene: 83311849

Centisome position: 59.17

GC content: 63.81

Gene sequence:

>1260_bases
TTGCAACGATTCCAGTCCCGCATTACCGTCAGCCAAGGTCCGTGGAAGGGCATAAGGAAGCAGCGGGTGCTTGTTTTGAA
AGCCGTCATAAAGAAGGTTCTCGCCGTCGTCTTCTCTGGAATGACGATGTCGGAGATCTTCGACCTGTTTCTGCCCACCC
GCCAGTCGGCCTTTGTGCAGCGTCGTCGTTCTCTTCTGATTCTGTCGCGCGTCCGGCTGGTGGCATTGACCTTTGCCGTG
CTGACGCCGCTGTGGATCCCCGTCGACCTGGTTATTTTCGAGACGACGCTGGCCATGTACCTGGCGGCACTGCGCGTGAT
GGCCTCCATTGCCTTCGTGTTGCTGGCTCTGTCCTTCCGCGGTTCGGACAGTGTGGCGGTGGCCCGCTGGGGGCTGGTGT
GGCTGCTGACCATTCCCACGGTGTTCTTCCTGATCAGCCATCCGTTGCTGGCGCAATTCGCCATCAATGACCCGGCGCAG
CAGGTGATTGCCGCCGGCTACGCCTTCCTGCCGTTCGTCATGGTGGCCGGTCTGTCGGTCTTCCCCATTACCGCGCTGGA
AGGGGCTCTGCTGGGGCTGCCGCTGGTCGTGGCCTATTTTCTGACCGGAGTTCTGGGCTATCAGCTGCTGCCGTTCGCCT
CCCATCTGGGGGCCCAGTGGCTGCTGCTGCTGCTGGCCATGGTGGCGACGCTGTCGGGCATGAGCCAACTGCACTTCATG
AGCCAGCTGGTGGATCAGTCGTCCCATGACGGCTTGACCCGGGCCTATAACCGCCGGGTGGGCGAGGAGATGCTGGTCCA
GCAATTCGTCACCGCCGCGCGCTCGAAGATCCCGCTGTCGCTGGCTTTCGTCGATCTGGACAACTTCAAGTCCATCAACG
ACAAGTACGGACACGAGGAAGGCGACAACGCCCTGCGGATCGCCTCGGCCTCGCTGCGCAAGGTGCTGCGCCGGGGCGAC
ATCCTGATTCGCTGGGGGGGCGAGGAATTCATCGCCGTGATGCCCAACACCGACCCCGCCGGCGCGGCCATCGCCATCGC
CCGGCTGCGCTCGGCCGGTCTTGGCATCCGCCCCGACGGGCGGCCGCTGACCGCCTCCATCGGCGTGGCCGAACGGCTGA
CCGACGGCATCGAGAGTTGGAACGAGCTGGTGGAGCGTGCCGATCACCGCATGTATGCCGCCAAGCAATCGGGCAAGGAC
CGGGTGATCGGCTGTGGTGACCTGGTACTGGGAGAGACCGTCTCTCAGGCCCTGGCCTGA

Upstream 100 bases:

>100_bases
CGTCAATCGACAGATGGTCCGGCGCGGATTTGGCGTCGCGGCTCAATCTAAAGCATGTACATACAAACCGGGTGGTCATA
CCCCAAGGGAGTAGTTTCCC

Downstream 100 bases:

>100_bases
ACGGCCGCTCAGGCCAGCTCGAAAATTCCCTCGATCTCCACCGACGCATCCAGCGGCAGGGCCGGCGCGCCCACCGCGAC
CCGGGCGTGGCGACCGGCCT

Product: GGDEF domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 419; Mature: 419

Protein sequence:

>419_residues
MQRFQSRITVSQGPWKGIRKQRVLVLKAVIKKVLAVVFSGMTMSEIFDLFLPTRQSAFVQRRRSLLILSRVRLVALTFAV
LTPLWIPVDLVIFETTLAMYLAALRVMASIAFVLLALSFRGSDSVAVARWGLVWLLTIPTVFFLISHPLLAQFAINDPAQ
QVIAAGYAFLPFVMVAGLSVFPITALEGALLGLPLVVAYFLTGVLGYQLLPFASHLGAQWLLLLLAMVATLSGMSQLHFM
SQLVDQSSHDGLTRAYNRRVGEEMLVQQFVTAARSKIPLSLAFVDLDNFKSINDKYGHEEGDNALRIASASLRKVLRRGD
ILIRWGGEEFIAVMPNTDPAGAAIAIARLRSAGLGIRPDGRPLTASIGVAERLTDGIESWNELVERADHRMYAAKQSGKD
RVIGCGDLVLGETVSQALA

Sequences:

>Translated_419_residues
MQRFQSRITVSQGPWKGIRKQRVLVLKAVIKKVLAVVFSGMTMSEIFDLFLPTRQSAFVQRRRSLLILSRVRLVALTFAV
LTPLWIPVDLVIFETTLAMYLAALRVMASIAFVLLALSFRGSDSVAVARWGLVWLLTIPTVFFLISHPLLAQFAINDPAQ
QVIAAGYAFLPFVMVAGLSVFPITALEGALLGLPLVVAYFLTGVLGYQLLPFASHLGAQWLLLLLAMVATLSGMSQLHFM
SQLVDQSSHDGLTRAYNRRVGEEMLVQQFVTAARSKIPLSLAFVDLDNFKSINDKYGHEEGDNALRIASASLRKVLRRGD
ILIRWGGEEFIAVMPNTDPAGAAIAIARLRSAGLGIRPDGRPLTASIGVAERLTDGIESWNELVERADHRMYAAKQSGKD
RVIGCGDLVLGETVSQALA
>Mature_419_residues
MQRFQSRITVSQGPWKGIRKQRVLVLKAVIKKVLAVVFSGMTMSEIFDLFLPTRQSAFVQRRRSLLILSRVRLVALTFAV
LTPLWIPVDLVIFETTLAMYLAALRVMASIAFVLLALSFRGSDSVAVARWGLVWLLTIPTVFFLISHPLLAQFAINDPAQ
QVIAAGYAFLPFVMVAGLSVFPITALEGALLGLPLVVAYFLTGVLGYQLLPFASHLGAQWLLLLLAMVATLSGMSQLHFM
SQLVDQSSHDGLTRAYNRRVGEEMLVQQFVTAARSKIPLSLAFVDLDNFKSINDKYGHEEGDNALRIASASLRKVLRRGD
ILIRWGGEEFIAVMPNTDPAGAAIAIARLRSAGLGIRPDGRPLTASIGVAERLTDGIESWNELVERADHRMYAAKQSGKD
RVIGCGDLVLGETVSQALA

Specific function: Unknown

COG id: COG3706

COG function: function code T; Response regulator containing a CheY-like receiver domain and a GGDEF domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=188, Percent_Identity=36.1702127659575, Blast_Score=104, Evalue=9e-24,
Organism=Escherichia coli, GI1786584, Length=183, Percent_Identity=33.3333333333333, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI87082007, Length=172, Percent_Identity=34.8837209302326, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI145693134, Length=156, Percent_Identity=31.4102564102564, Blast_Score=88, Evalue=1e-18,
Organism=Escherichia coli, GI1787802, Length=202, Percent_Identity=29.7029702970297, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI1787262, Length=161, Percent_Identity=30.4347826086957, Blast_Score=82, Evalue=6e-17,
Organism=Escherichia coli, GI1788381, Length=168, Percent_Identity=33.3333333333333, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI87081974, Length=272, Percent_Identity=24.6323529411765, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI1787541, Length=188, Percent_Identity=30.3191489361702, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1787816, Length=162, Percent_Identity=31.4814814814815, Blast_Score=69, Evalue=7e-13,
Organism=Escherichia coli, GI87081977, Length=98, Percent_Identity=39.7959183673469, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656 [H]

Pfam domain/function: PF00990 GGDEF; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 45901; Mature: 45901

Theoretical pI: Translated: 10.40; Mature: 10.40

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCHHHHHHHHHHHCC
>Mature Secondary Structure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CCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]