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The map label for this gene is secD

Identifier: 83311613

GI number: 83311613

Start: 2695081

End: 2696649

Strand: Reverse

Name: secD

Synonym: amb2514

Alternate gene names: 83311613

Gene position: 2696649-2695081 (Counterclockwise)

Preceding gene: 83311614

Following gene: 83311612

Centisome position: 54.29

GC content: 65.65

Gene sequence:

>1569_bases
ATGAACCATTTTCCAAAATGGAAGATCGCATTGGTGGCGATTGTGAGCCTGTTCGGCATCGTCTTCGCGGTGCCGAACCT
GCTGTCCCGCGATCAGGCCGACCGTATGCCGCACTGGCTGCAGCCGGTCAGCCTGGGCCTGGACCTTCAGGGCGGGTCCT
ATCTGCTGCTGGAGGTGGATACCGCCTATGTGTTCCGCGAACAGCTGACCTCGCTGGTGGAAGGCGTGCGCACCACGCTG
CGCAAGGAAAAGATCAAGTACTCCGACCTGGGCGCCAGGGGCGATCAGGTCAGCGTGCGCATCATCGAGGCCGATGAGCG
CGCCAAGGCCCGCGAATTTTTGCGCAAGATCGATGCCGAGGCGGCGATCGAGACCAGGGACGACGGTTCCATGGTGCTCA
AATATTCCGAGCAGGCGGTCAAGGCCCGCAAGACCGCGGCCATCGAGCAATCGCTGGAGATCGTGCGCCGCCGTATCGAC
GAGTTGGGCACCCGCGAGCCCTCGATCCAGCGTCAGGGGGAGGATCGCATCGTCGTCCAGTTGCCCGGCGTCAAGGACCC
CGACCGCATCAAGGCTCTGCTAGGCAAGACCGCCAAGCTGACCTTCCACCTGCTCGACGATTCCACCGGCGCCGACGAAG
CGCAGAAGGGCCGGGTGCCGCCCGGCTCCATGCTGCTGCCCTCCGCCGAGAAGGAGCGGGGCATGCCGGAATCCTACGTG
GTGCGCAAGCGCATCGAGGTGGGCGGCGACATGCTGGTGGATTCCAAGGCCACCTACAGCGAAGGCCGCCCGGTGGTCAG
CTTCCGCTTCAGCGCCGCCGGCGCCAAGAAGTTCGGCGATGCCACCCGCGAGAATGCCGGCAAGTTCCTGGCCATCGTGC
TGGACGAGAAGGTGATCAGCGCACCGCGCATCAACGAGCCCATCCTGGGCGGTTCCGGCATCATCTCGGGCAGCTTCTCG
GTGCAGCAGGCCCAGGATTTGTCCCTGCTGCTGCGTGCCGGCGCCTTGCCCGCGCCGCTGCAGGTTCTTGAAGAGCGCAC
CGTCGGTCCCGATCTCGGCGCCGATTCCATCCAGGCCGGCGCCGTGGCCAGTCTGCTGGGCCTCGCCCTGGTGGTGGTGC
TGATGATCATCGTCTATGGCTCGCTCGGCGCCCTTGCCGATCTCGCCATGGTGCTCAACCTGATTCTGCTGCTGGCCTCG
CTGTCGGCCCTGGGGGCCACGCTGACCCTGCCGGGCATCGCCGGCATCGTGCTGACCATGGGCATGGCGGTGGATGCCAA
CGTGCTGATCTACGAGCGCATGCGCGAAGAGCAGCGCAACGGCCGCTCCATCATGTCGGCTATTCAGGCCGGCTATGACC
GCGCCTTCGGCACCATCTTCGACGCCCACGTCACCACCCTGGTGGCGGCGGCGTTGCTGTTCCAGTTCGGCTCGGGTCCC
GTTCGTGGTTTCGCCGTTACCCTGACGCTGGGCCTGCTGGCCTCGCTGTTCACCGCTGTGCTGGTCAATCGCATCATGGT
GGTGACCTGGGTGCGCTGGCGCCGCCTCAAGACCCTGCCGCTGGCTTAA

Upstream 100 bases:

>100_bases
CCCCGCAACTGCCGACAAGGCCAAGGACGACAAGTCCGACGCCGAACCCGCCGCCGACAAGTAAGGCTTTTCCTTCCTTC
CAACCAGCACAGGCCGGGAC

Downstream 100 bases:

>100_bases
AGGAGCGAGAGACATGCAACTGATCGACCGCTTCCTGCCCCACGGCACCAAGTACGACTTCATCCGCTATCGCTGGTTCG
CCTTCTGCATCACCGCCGTG

Product: preprotein translocase subunit SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 522; Mature: 522

Protein sequence:

>522_residues
MNHFPKWKIALVAIVSLFGIVFAVPNLLSRDQADRMPHWLQPVSLGLDLQGGSYLLLEVDTAYVFREQLTSLVEGVRTTL
RKEKIKYSDLGARGDQVSVRIIEADERAKAREFLRKIDAEAAIETRDDGSMVLKYSEQAVKARKTAAIEQSLEIVRRRID
ELGTREPSIQRQGEDRIVVQLPGVKDPDRIKALLGKTAKLTFHLLDDSTGADEAQKGRVPPGSMLLPSAEKERGMPESYV
VRKRIEVGGDMLVDSKATYSEGRPVVSFRFSAAGAKKFGDATRENAGKFLAIVLDEKVISAPRINEPILGGSGIISGSFS
VQQAQDLSLLLRAGALPAPLQVLEERTVGPDLGADSIQAGAVASLLGLALVVVLMIIVYGSLGALADLAMVLNLILLLAS
LSALGATLTLPGIAGIVLTMGMAVDANVLIYERMREEQRNGRSIMSAIQAGYDRAFGTIFDAHVTTLVAAALLFQFGSGP
VRGFAVTLTLGLLASLFTAVLVNRIMVVTWVRWRRLKTLPLA

Sequences:

>Translated_522_residues
MNHFPKWKIALVAIVSLFGIVFAVPNLLSRDQADRMPHWLQPVSLGLDLQGGSYLLLEVDTAYVFREQLTSLVEGVRTTL
RKEKIKYSDLGARGDQVSVRIIEADERAKAREFLRKIDAEAAIETRDDGSMVLKYSEQAVKARKTAAIEQSLEIVRRRID
ELGTREPSIQRQGEDRIVVQLPGVKDPDRIKALLGKTAKLTFHLLDDSTGADEAQKGRVPPGSMLLPSAEKERGMPESYV
VRKRIEVGGDMLVDSKATYSEGRPVVSFRFSAAGAKKFGDATRENAGKFLAIVLDEKVISAPRINEPILGGSGIISGSFS
VQQAQDLSLLLRAGALPAPLQVLEERTVGPDLGADSIQAGAVASLLGLALVVVLMIIVYGSLGALADLAMVLNLILLLAS
LSALGATLTLPGIAGIVLTMGMAVDANVLIYERMREEQRNGRSIMSAIQAGYDRAFGTIFDAHVTTLVAAALLFQFGSGP
VRGFAVTLTLGLLASLFTAVLVNRIMVVTWVRWRRLKTLPLA
>Mature_522_residues
MNHFPKWKIALVAIVSLFGIVFAVPNLLSRDQADRMPHWLQPVSLGLDLQGGSYLLLEVDTAYVFREQLTSLVEGVRTTL
RKEKIKYSDLGARGDQVSVRIIEADERAKAREFLRKIDAEAAIETRDDGSMVLKYSEQAVKARKTAAIEQSLEIVRRRID
ELGTREPSIQRQGEDRIVVQLPGVKDPDRIKALLGKTAKLTFHLLDDSTGADEAQKGRVPPGSMLLPSAEKERGMPESYV
VRKRIEVGGDMLVDSKATYSEGRPVVSFRFSAAGAKKFGDATRENAGKFLAIVLDEKVISAPRINEPILGGSGIISGSFS
VQQAQDLSLLLRAGALPAPLQVLEERTVGPDLGADSIQAGAVASLLGLALVVVLMIIVYGSLGALADLAMVLNLILLLAS
LSALGATLTLPGIAGIVLTMGMAVDANVLIYERMREEQRNGRSIMSAIQAGYDRAFGTIFDAHVTTLVAAALLFQFGSGP
VRGFAVTLTLGLLASLFTAVLVNRIMVVTWVRWRRLKTLPLA

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=512, Percent_Identity=37.890625, Blast_Score=323, Evalue=2e-89,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001036
- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 56506; Mature: 56506

Theoretical pI: Translated: 9.67; Mature: 9.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNHFPKWKIALVAIVSLFGIVFAVPNLLSRDQADRMPHWLQPVSLGLDLQGGSYLLLEVD
CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCHHHCHHHCCEEECCCCEEEEEEC
TAYVFREQLTSLVEGVRTTLRKEKIKYSDLGARGDQVSVRIIEADERAKAREFLRKIDAE
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCEEEEEEEECCCHHHHHHHHHHHCCH
AAIETRDDGSMVLKYSEQAVKARKTAAIEQSLEIVRRRIDELGTREPSIQRQGEDRIVVQ
HCEEECCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCEEEEE
LPGVKDPDRIKALLGKTAKLTFHLLDDSTGADEAQKGRVPPGSMLLPSAEKERGMPESYV
ECCCCCHHHHHHHHCCCCEEEEEEECCCCCCCCHHCCCCCCCCCCCCCCHHHCCCCHHHH
VRKRIEVGGDMLVDSKATYSEGRPVVSFRFSAAGAKKFGDATRENAGKFLAIVLDEKVIS
HHHHHHCCCCEEECCCCCCCCCCCEEEEEECCCCCHHHCCHHHHCCCCEEEEEECCHHHC
APRINEPILGGSGIISGSFSVQQAQDLSLLLRAGALPAPLQVLEERTVGPDLGADSIQAG
CCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCHHHHH
AVASLLGLALVVVLMIIVYGSLGALADLAMVLNLILLLASLSALGATLTLPGIAGIVLTM
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHH
GMAVDANVLIYERMREEQRNGRSIMSAIQAGYDRAFGTIFDAHVTTLVAAALLFQFGSGP
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
VRGFAVTLTLGLLASLFTAVLVNRIMVVTWVRWRRLKTLPLA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MNHFPKWKIALVAIVSLFGIVFAVPNLLSRDQADRMPHWLQPVSLGLDLQGGSYLLLEVD
CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCHHHCHHHCCEEECCCCEEEEEEC
TAYVFREQLTSLVEGVRTTLRKEKIKYSDLGARGDQVSVRIIEADERAKAREFLRKIDAE
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCEEEEEEEECCCHHHHHHHHHHHCCH
AAIETRDDGSMVLKYSEQAVKARKTAAIEQSLEIVRRRIDELGTREPSIQRQGEDRIVVQ
HCEEECCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCEEEEE
LPGVKDPDRIKALLGKTAKLTFHLLDDSTGADEAQKGRVPPGSMLLPSAEKERGMPESYV
ECCCCCHHHHHHHHCCCCEEEEEEECCCCCCCCHHCCCCCCCCCCCCCCHHHCCCCHHHH
VRKRIEVGGDMLVDSKATYSEGRPVVSFRFSAAGAKKFGDATRENAGKFLAIVLDEKVIS
HHHHHHCCCCEEECCCCCCCCCCCEEEEEECCCCCHHHCCHHHHCCCCEEEEEECCHHHC
APRINEPILGGSGIISGSFSVQQAQDLSLLLRAGALPAPLQVLEERTVGPDLGADSIQAG
CCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCHHHHH
AVASLLGLALVVVLMIIVYGSLGALADLAMVLNLILLLASLSALGATLTLPGIAGIVLTM
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHH
GMAVDANVLIYERMREEQRNGRSIMSAIQAGYDRAFGTIFDAHVTTLVAAALLFQFGSGP
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
VRGFAVTLTLGLLASLFTAVLVNRIMVVTWVRWRRLKTLPLA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA