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The map label for this gene is secF

Identifier: 83311612

GI number: 83311612

Start: 2694108

End: 2695067

Strand: Reverse

Name: secF

Synonym: amb2513

Alternate gene names: 83311612

Gene position: 2695067-2694108 (Counterclockwise)

Preceding gene: 83311613

Following gene: 83311611

Centisome position: 54.26

GC content: 63.96

Gene sequence:

>960_bases
ATGCAACTGATCGACCGCTTCCTGCCCCACGGCACCAAGTACGACTTCATCCGCTATCGCTGGTTCGCCTTCTGCATCAC
CGCCGTGCTGATCATCGGCTCGTTCGCCTCCATCGCGATCAAGGGCTTCAATTTCGGCATCGACTTCGCCGGCGGCATCC
TGCTGGAGGCCCAATCCACCACCGGTCCCGCCGACTTGCACGGCATGCGCACCACACTCGGCCATCTGGGCCTGGGCGAG
GTTTCGCTGCAGGAGTTCGGCACCACCGGCCGCGATGTGATGATCCGTGTCCAGCGCCAGGAAGGGGACGAGAAGACCCA
GATGGCCGCGCTATCCAAGGTCAAGGCCTCCCTGGGCGAGGGCTTCACCTACCGCCGGGTCGAGATCGTCGGTCCCAAGG
TGGGCGGCGAACTGGTGCGCGACGGCGTCCTGGCCGTGGTTCTGGCCCTGGGCGCCATCGCCCTGTATGTCTGGTTCCGC
TTCGAGTGGCAATTCGGCGTCGGTGCCCTGGTGTCGACCTTCCACGACGTCATCACCACCTTCGGCCTGTTCTCCATCAC
CGGATTGGAGTTCAACCTGACCACCGTGGCGGCGATTCTGACCATCGCCGGCTATTCGGTGAACGACACCGTGGTGGAAT
ATGACCGGGTGCGCGAGAATCTGCGCAAGTTCAAGACCATGTCGCTCTATGACCTGCTCAATCTGGCGGTCAACGAGACG
CTGGCCCGCACCATCCTCACCGTGTCCACGGTGTTCGTCACCGTGCTGGCCCTGCTGTTCGTGGGTGGCGAGGTGCTGCG
CGGCTTCTCCATCGCCATGCTGTGGGGCCTGATCATCGGCACCTTCTCGTCCATCTACGTGGCCATGCCCATGTTGATCT
ACTTCAACCTGCGTACCGGCAAGGCGGCGGAAGAGGCCGAGGCGGAGGAAGCCCCGACGGGTGGTCCCGCCGCGCCCTGA

Upstream 100 bases:

>100_bases
TCGCTGTTCACCGCTGTGCTGGTCAATCGCATCATGGTGGTGACCTGGGTGCGCTGGCGCCGCCTCAAGACCCTGCCGCT
GGCTTAAAGGAGCGAGAGAC

Downstream 100 bases:

>100_bases
TCCATGGACATCACCCCCCTCATTCCCACCGGCAGGCAGATCGTCAAGGGATACGGCGATGGCGGCTTCACCATCGCCGG
CCTCCGTTGGGAGGGGTCGG

Product: preprotein translocase subunit SecF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 319; Mature: 319

Protein sequence:

>319_residues
MQLIDRFLPHGTKYDFIRYRWFAFCITAVLIIGSFASIAIKGFNFGIDFAGGILLEAQSTTGPADLHGMRTTLGHLGLGE
VSLQEFGTTGRDVMIRVQRQEGDEKTQMAALSKVKASLGEGFTYRRVEIVGPKVGGELVRDGVLAVVLALGAIALYVWFR
FEWQFGVGALVSTFHDVITTFGLFSITGLEFNLTTVAAILTIAGYSVNDTVVEYDRVRENLRKFKTMSLYDLLNLAVNET
LARTILTVSTVFVTVLALLFVGGEVLRGFSIAMLWGLIIGTFSSIYVAMPMLIYFNLRTGKAAEEAEAEEAPTGGPAAP

Sequences:

>Translated_319_residues
MQLIDRFLPHGTKYDFIRYRWFAFCITAVLIIGSFASIAIKGFNFGIDFAGGILLEAQSTTGPADLHGMRTTLGHLGLGE
VSLQEFGTTGRDVMIRVQRQEGDEKTQMAALSKVKASLGEGFTYRRVEIVGPKVGGELVRDGVLAVVLALGAIALYVWFR
FEWQFGVGALVSTFHDVITTFGLFSITGLEFNLTTVAAILTIAGYSVNDTVVEYDRVRENLRKFKTMSLYDLLNLAVNET
LARTILTVSTVFVTVLALLFVGGEVLRGFSIAMLWGLIIGTFSSIYVAMPMLIYFNLRTGKAAEEAEAEEAPTGGPAAP
>Mature_319_residues
MQLIDRFLPHGTKYDFIRYRWFAFCITAVLIIGSFASIAIKGFNFGIDFAGGILLEAQSTTGPADLHGMRTTLGHLGLGE
VSLQEFGTTGRDVMIRVQRQEGDEKTQMAALSKVKASLGEGFTYRRVEIVGPKVGGELVRDGVLAVVLALGAIALYVWFR
FEWQFGVGALVSTFHDVITTFGLFSITGLEFNLTTVAAILTIAGYSVNDTVVEYDRVRENLRKFKTMSLYDLLNLAVNET
LARTILTVSTVFVTVLALLFVGGEVLRGFSIAMLWGLIIGTFSSIYVAMPMLIYFNLRTGKAAEEAEAEEAPTGGPAAP

Specific function: Involved in protein export [H]

COG id: COG0341

COG function: function code U; Preprotein translocase subunit SecF

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786610, Length=316, Percent_Identity=37.9746835443038, Blast_Score=226, Evalue=1e-60,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645
- InterPro:   IPR005665 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 34794; Mature: 34794

Theoretical pI: Translated: 5.74; Mature: 5.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLIDRFLPHGTKYDFIRYRWFAFCITAVLIIGSFASIAIKGFNFGIDFAGGILLEAQST
CCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCEECCCCEEEEECCC
TGPADLHGMRTTLGHLGLGEVSLQEFGTTGRDVMIRVQRQEGDEKTQMAALSKVKASLGE
CCCHHHHHHHHHHHHCCCCCHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCC
GFTYRRVEIVGPKVGGELVRDGVLAVVLALGAIALYVWFRFEWQFGVGALVSTFHDVITT
CCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHHH
FGLFSITGLEFNLTTVAAILTIAGYSVNDTVVEYDRVRENLRKFKTMSLYDLLNLAVNET
HHHHHHCCCEEHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LARTILTVSTVFVTVLALLFVGGEVLRGFSIAMLWGLIIGTFSSIYVAMPMLIYFNLRTG
HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCC
KAAEEAEAEEAPTGGPAAP
CCHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MQLIDRFLPHGTKYDFIRYRWFAFCITAVLIIGSFASIAIKGFNFGIDFAGGILLEAQST
CCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCEECCCCEEEEECCC
TGPADLHGMRTTLGHLGLGEVSLQEFGTTGRDVMIRVQRQEGDEKTQMAALSKVKASLGE
CCCHHHHHHHHHHHHCCCCCHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCC
GFTYRRVEIVGPKVGGELVRDGVLAVVLALGAIALYVWFRFEWQFGVGALVSTFHDVITT
CCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHHH
FGLFSITGLEFNLTTVAAILTIAGYSVNDTVVEYDRVRENLRKFKTMSLYDLLNLAVNET
HHHHHHCCCEEHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LARTILTVSTVFVTVLALLFVGGEVLRGFSIAMLWGLIIGTFSSIYVAMPMLIYFNLRTG
HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCC
KAAEEAEAEEAPTGGPAAP
CCHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA