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The map label for this gene is rpfG [H]

Identifier: 83311599

GI number: 83311599

Start: 2677108

End: 2678220

Strand: Reverse

Name: rpfG [H]

Synonym: amb2500

Alternate gene names: 83311599

Gene position: 2678220-2677108 (Counterclockwise)

Preceding gene: 83311600

Following gene: 83311598

Centisome position: 53.92

GC content: 63.16

Gene sequence:

>1113_bases
TTGCCCACGCATGCGGCGCATCGCGGATTGGCCGAGCGGCTGATCTGTCTTCACGACGAGATCAAGGGCGACAACGCGCT
GGCCGGACTGAGCCGGATCGCCATCGCCCTGTACGACGAGTCGTCGGATATCCTCAAGACGTTCATCCATTCCAGCGACG
GCGAGAGCCCGCTGGACCATTCCACGGCCAAGCTTGCCGAAATGCCCGGGCTGAAGCGGCTGGCGGGGACCGGCGGTCGC
CGTACCCTGAATGACCTGGAGAAGGTGGCGGCCAGCGGCCAGGACCACGCCACGCGCCTGCTGGCGGCGGGCTACCGGTC
CAGCTACACCGTACCCATCCAGTCCAAGGGCATGTTCTACGGTTTTCTGTTCCTCAATTCCTTCGAGGCGGGCTTTTTCT
CGCCGCCGGTGGTTCACCGTCTGCGCCCCTATGCCGAACTGATCGCGCAGATCATCATGCGCGAGCTGGACACCGTGCGG
ATGATGCAGGCGGCGGTGAAGGTGATCCGTCAGGTCTCCACCGTGCGTGACGAGGAAACCGGAGCCCATCTGGCCCGCAT
GGCCCGCTATACGCGGCTGATCGCCCTCAAGCTGGCGCCGCAATGCTGTCTGACCGACGAATATGTCGAGTACCTGTTCC
AGTTCGCGCCACTGCACGATCTCGGCAAGATTTCGGTACCCGACCACATTCTGCTCAAGCCGGCGCGGCTGACGCCCGAG
GAATTCAACGTCATGAAGGGCCATGTGGCCCGGGGCGTCGAAATCATCGACCTGATGGTCGGCGACATGGGGCTGCAATC
GCTGCCGCATTTCCACATGCTGCGCAACGTCATCGCCTATCATCACGAGGCCATGGACGGAAGCGGCTATCCCTATGGCC
TGCGGGGAAGCGACATCCCCCTGGAGGCGCGGATCGCCGCCGTGGCCGATGTGTTCGATGCGTTGACCTCGGCCCGTCCG
TACAAGGAGGCCTGGACCAACGAAGCGGCTTTCGACCTGTTGCGCAGCCAGGCCGGGGAAAAGTTCGATCCCCAGTGCGT
TGCCGCTCTGATCGACAGCGCCGTTCAGATCGGTGATATTCAGACTCGCTTTGACGAGACGGTGTACGACTGA

Upstream 100 bases:

>100_bases
TTTGACTGGTCGTACCAAGGCCAGCTATAGTCCCCGCATGATGAATATCAAGATCGGCGACGAACAAACAAAGGTAATAA
AAAAGGAAGCTGTCGCCGCC

Downstream 100 bases:

>100_bases
TGCATTCCCTGGCGCGTCTGATGGGGCTGGCCGCCCTGGTCCTGGCGACCGGCGCGGCGGCGGCCGAGTCCGGCCAGCAG
CAATGGTCGGGGATCGGCCA

Product: HD-GYP domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 370; Mature: 369

Protein sequence:

>370_residues
MPTHAAHRGLAERLICLHDEIKGDNALAGLSRIAIALYDESSDILKTFIHSSDGESPLDHSTAKLAEMPGLKRLAGTGGR
RTLNDLEKVAASGQDHATRLLAAGYRSSYTVPIQSKGMFYGFLFLNSFEAGFFSPPVVHRLRPYAELIAQIIMRELDTVR
MMQAAVKVIRQVSTVRDEETGAHLARMARYTRLIALKLAPQCCLTDEYVEYLFQFAPLHDLGKISVPDHILLKPARLTPE
EFNVMKGHVARGVEIIDLMVGDMGLQSLPHFHMLRNVIAYHHEAMDGSGYPYGLRGSDIPLEARIAAVADVFDALTSARP
YKEAWTNEAAFDLLRSQAGEKFDPQCVAALIDSAVQIGDIQTRFDETVYD

Sequences:

>Translated_370_residues
MPTHAAHRGLAERLICLHDEIKGDNALAGLSRIAIALYDESSDILKTFIHSSDGESPLDHSTAKLAEMPGLKRLAGTGGR
RTLNDLEKVAASGQDHATRLLAAGYRSSYTVPIQSKGMFYGFLFLNSFEAGFFSPPVVHRLRPYAELIAQIIMRELDTVR
MMQAAVKVIRQVSTVRDEETGAHLARMARYTRLIALKLAPQCCLTDEYVEYLFQFAPLHDLGKISVPDHILLKPARLTPE
EFNVMKGHVARGVEIIDLMVGDMGLQSLPHFHMLRNVIAYHHEAMDGSGYPYGLRGSDIPLEARIAAVADVFDALTSARP
YKEAWTNEAAFDLLRSQAGEKFDPQCVAALIDSAVQIGDIQTRFDETVYD
>Mature_369_residues
PTHAAHRGLAERLICLHDEIKGDNALAGLSRIAIALYDESSDILKTFIHSSDGESPLDHSTAKLAEMPGLKRLAGTGGRR
TLNDLEKVAASGQDHATRLLAAGYRSSYTVPIQSKGMFYGFLFLNSFEAGFFSPPVVHRLRPYAELIAQIIMRELDTVRM
MQAAVKVIRQVSTVRDEETGAHLARMARYTRLIALKLAPQCCLTDEYVEYLFQFAPLHDLGKISVPDHILLKPARLTPEE
FNVMKGHVARGVEIIDLMVGDMGLQSLPHFHMLRNVIAYHHEAMDGSGYPYGLRGSDIPLEARIAAVADVFDALTSARPY
KEAWTNEAAFDLLRSQAGEKFDPQCVAALIDSAVQIGDIQTRFDETVYD

Specific function: Positively regulates the synthesis of extracellular enzymes and extracellular polysaccharides. The cell-cell signaling system encoded by rpf genes is required for full virulence and is implicated in regulation of the formation and dispersal of biofilms [H

COG id: COG2206

COG function: function code T; HD-GYP domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR003607
- InterPro:   IPR001789 [H]

Pfam domain/function: PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 40980; Mature: 40849

Theoretical pI: Translated: 6.35; Mature: 6.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTHAAHRGLAERLICLHDEIKGDNALAGLSRIAIALYDESSDILKTFIHSSDGESPLDH
CCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHEEEEECCCHHHHHHHHHCCCCCCCCCH
STAKLAEMPGLKRLAGTGGRRTLNDLEKVAASGQDHATRLLAAGYRSSYTVPIQSKGMFY
HHHHHHHCCCHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCEEEEECCCCCEE
GFLFLNSFEAGFFSPPVVHRLRPYAELIAQIIMRELDTVRMMQAAVKVIRQVSTVRDEET
EEHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
GAHLARMARYTRLIALKLAPQCCLTDEYVEYLFQFAPLHDLGKISVPDHILLKPARLTPE
HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCHHHCCCCCCCCHHEECCCCCCHH
EFNVMKGHVARGVEIIDLMVGDMGLQSLPHFHMLRNVIAYHHEAMDGSGYPYGLRGSDIP
HHHHHHHHHHCCHHHHHHHHHHHCHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
LEARIAAVADVFDALTSARPYKEAWTNEAAFDLLRSQAGEKFDPQCVAALIDSAVQIGDI
HHHHHHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCHH
QTRFDETVYD
HHHHHHHCCC
>Mature Secondary Structure 
PTHAAHRGLAERLICLHDEIKGDNALAGLSRIAIALYDESSDILKTFIHSSDGESPLDH
CCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHEEEEECCCHHHHHHHHHCCCCCCCCCH
STAKLAEMPGLKRLAGTGGRRTLNDLEKVAASGQDHATRLLAAGYRSSYTVPIQSKGMFY
HHHHHHHCCCHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCEEEEECCCCCEE
GFLFLNSFEAGFFSPPVVHRLRPYAELIAQIIMRELDTVRMMQAAVKVIRQVSTVRDEET
EEHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
GAHLARMARYTRLIALKLAPQCCLTDEYVEYLFQFAPLHDLGKISVPDHILLKPARLTPE
HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCHHHCCCCCCCCHHEECCCCCCHH
EFNVMKGHVARGVEIIDLMVGDMGLQSLPHFHMLRNVIAYHHEAMDGSGYPYGLRGSDIP
HHHHHHHHHHCCHHHHHHHHHHHCHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
LEARIAAVADVFDALTSARPYKEAWTNEAAFDLLRSQAGEKFDPQCVAALIDSAVQIGDI
HHHHHHHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCHH
QTRFDETVYD
HHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11123673 [H]