BacMap

Definition	Magnetospirillum magneticum AMB-1 chromosome, complete genome.
Accession	NC_007626
Length	4,967,148

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The map label for this gene is livF [H]

Identifier: 83311427

GI number: 83311427

Start: 2531065

End: 2531775

Strand: Reverse

Name: livF [H]

Synonym: amb2328

Alternate gene names: 83311427

Gene position: 2531775-2531065 (Counterclockwise)

Preceding gene: 83311428

Following gene: 83311426

Centisome position: 50.97

GC content: 63.71

Gene sequence:

>711_bases
ATGGCTGAGCCCGAAATCCTGCTCTCCGTCCGGGACCTGCACGCCCATTACGGCGAATCCCATGTGCTGCACGGCATGAG
CTTCGACGTGCCCCGGGGCGAGGTCGTCACCTTGCTGGGACGCAACGGCGTCGGCAAGACCACCACCATGCGCTCCATCA
TGGGCATCGTCGGCAAGCGCGCCGGCTCGGTAAAGTACCAGGGCACCGAAACCATCGGCCTGTCGTCCAACCGCATCGCC
CGGCTGGGCCTCGCCTTTTGCCCGGAGGAGCGCGGCATTTTCTCCTCGCTCTCGGTCAAGGAAAACATGGTGCTGCCGCC
GGTGATCAAGCCGGGCGGACTGTCGCTGGACGAGGTCTATCAGCTGTTCCCCCGCCTGCTGGAGCGCGGCTCCAGCCAGG
GCACCAAGCTGTCGGGCGGCGAGCAGCAGATGCTGGCTATCGCCCGCATCCTGCGCACCGGCGCGGACATGCTGCTGCTG
GACGAGCCCACCGAGGGTCTGGCCCCGGTCATCGTCCAGCATATCGGCGATATCATCCGGACCTTGAGAGAGAAAGGTTT
CACCATCCTCTTGGTGGAACAGAACTTCCATTTTGCCGCCACCGTCGCCGACCGCCATTACGTGGTCGAGCACGGGCAGG
TGATCGACATGATCCCCAACGAATCCCTGGCGGCCAACATGGACAAGCTGAAGAGCTATCTCGGCGTTTAA

Upstream 100 bases:

>100_bases
AAGCTGGGCCGGGTGCTGGCCGAGGGCAGCTATGCCGAGATCACCGACAACCCCGAGGTGGTCGAGGCCTATATGGGCGC
GGGCCATGGAGGTGCCGGCC

Downstream 100 bases:

>100_bases
CTAACGGGAGGACCAATCATGGTGATGAAGAGGCTTCTGCTCGGCGCCGCGGCGCTGGCCCTGTCCACCGGCATGGCGCA
TGCCCAGTACAGCGACGGCA

Product: ABC-type branched-chain amino acid transport systems, ATPase component

Products: ADP; phosphate; L-leucine [Cytoplasm]; ADP; L-valine [Cytoplasm]; L-iso-leucine [Cytoplasm] [C]

Alternate protein names: LIV-I protein F [H]

Number of amino acids: Translated: 236; Mature: 235

Protein sequence:

>236_residues
MAEPEILLSVRDLHAHYGESHVLHGMSFDVPRGEVVTLLGRNGVGKTTTMRSIMGIVGKRAGSVKYQGTETIGLSSNRIA
RLGLAFCPEERGIFSSLSVKENMVLPPVIKPGGLSLDEVYQLFPRLLERGSSQGTKLSGGEQQMLAIARILRTGADMLLL
DEPTEGLAPVIVQHIGDIIRTLREKGFTILLVEQNFHFAATVADRHYVVEHGQVIDMIPNESLAANMDKLKSYLGV

Sequences:

>Translated_236_residues
MAEPEILLSVRDLHAHYGESHVLHGMSFDVPRGEVVTLLGRNGVGKTTTMRSIMGIVGKRAGSVKYQGTETIGLSSNRIA
RLGLAFCPEERGIFSSLSVKENMVLPPVIKPGGLSLDEVYQLFPRLLERGSSQGTKLSGGEQQMLAIARILRTGADMLLL
DEPTEGLAPVIVQHIGDIIRTLREKGFTILLVEQNFHFAATVADRHYVVEHGQVIDMIPNESLAANMDKLKSYLGV
>Mature_235_residues
AEPEILLSVRDLHAHYGESHVLHGMSFDVPRGEVVTLLGRNGVGKTTTMRSIMGIVGKRAGSVKYQGTETIGLSSNRIAR
LGLAFCPEERGIFSSLSVKENMVLPPVIKPGGLSLDEVYQLFPRLLERGSSQGTKLSGGEQQMLAIARILRTGADMLLLD
EPTEGLAPVIVQHIGDIIRTLREKGFTILLVEQNFHFAATVADRHYVVEHGQVIDMIPNESLAANMDKLKSYLGV

Specific function: Component of the leucine-specific transport system [H]

COG id: COG0410

COG function: function code E; ABC-type branched-chain amino acid transport systems, ATPase component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI31657092, Length=203, Percent_Identity=27.5862068965517, Blast_Score=83, Evalue=2e-16,
Organism=Homo sapiens, GI153792144, Length=211, Percent_Identity=27.4881516587678, Blast_Score=83, Evalue=3e-16,
Organism=Homo sapiens, GI45446740, Length=198, Percent_Identity=29.7979797979798, Blast_Score=81, Evalue=9e-16,
Organism=Homo sapiens, GI47078218, Length=198, Percent_Identity=29.7979797979798, Blast_Score=81, Evalue=1e-15,
Organism=Homo sapiens, GI150417984, Length=216, Percent_Identity=32.4074074074074, Blast_Score=80, Evalue=1e-15,
Organism=Homo sapiens, GI21536376, Length=217, Percent_Identity=28.5714285714286, Blast_Score=80, Evalue=1e-15,
Organism=Homo sapiens, GI27881501, Length=203, Percent_Identity=28.5714285714286, Blast_Score=78, Evalue=7e-15,
Organism=Homo sapiens, GI30795238, Length=203, Percent_Identity=28.5714285714286, Blast_Score=78, Evalue=7e-15,
Organism=Homo sapiens, GI27436953, Length=217, Percent_Identity=28.110599078341, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI27262624, Length=199, Percent_Identity=28.1407035175879, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI27262626, Length=199, Percent_Identity=28.1407035175879, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI27477115, Length=218, Percent_Identity=28.4403669724771, Blast_Score=74, Evalue=8e-14,
Organism=Homo sapiens, GI116734710, Length=197, Percent_Identity=28.4263959390863, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI148612844, Length=221, Percent_Identity=29.4117647058824, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI255708477, Length=221, Percent_Identity=29.4117647058824, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI105990541, Length=188, Percent_Identity=28.7234042553192, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI4505771, Length=176, Percent_Identity=27.2727272727273, Blast_Score=65, Evalue=4e-11,
Organism=Homo sapiens, GI9961250, Length=176, Percent_Identity=27.2727272727273, Blast_Score=65, Evalue=4e-11,
Organism=Homo sapiens, GI9961252, Length=176, Percent_Identity=27.2727272727273, Blast_Score=65, Evalue=4e-11,
Organism=Escherichia coli, GI87082268, Length=240, Percent_Identity=40.8333333333333, Blast_Score=175, Evalue=3e-45,
Organism=Escherichia coli, GI1789593, Length=235, Percent_Identity=34.468085106383, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI1789864, Length=255, Percent_Identity=29.0196078431373, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI1788225, Length=238, Percent_Identity=30.2521008403361, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1789672, Length=240, Percent_Identity=29.5833333333333, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI1787029, Length=217, Percent_Identity=28.5714285714286, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI1787089, Length=215, Percent_Identity=30.6976744186047, Blast_Score=98, Evalue=5e-22,
Organism=Escherichia coli, GI1787792, Length=211, Percent_Identity=31.2796208530806, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1788761, Length=220, Percent_Identity=30.9090909090909, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1787105, Length=227, Percent_Identity=29.9559471365639, Blast_Score=83, Evalue=1e-17,
Organism=Escherichia coli, GI1790190, Length=219, Percent_Identity=27.3972602739726, Blast_Score=83, Evalue=1e-17,
Organism=Escherichia coli, GI48995001, Length=233, Percent_Identity=30.0429184549356, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1790525, Length=235, Percent_Identity=25.9574468085106, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1788644, Length=239, Percent_Identity=31.3807531380753, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1786872, Length=240, Percent_Identity=27.5, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1786398, Length=207, Percent_Identity=28.9855072463768, Blast_Score=81, Evalue=6e-17,
Organism=Escherichia coli, GI1789991, Length=218, Percent_Identity=28.4403669724771, Blast_Score=81, Evalue=8e-17,
Organism=Escherichia coli, GI1788897, Length=203, Percent_Identity=28.0788177339901, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1790162, Length=234, Percent_Identity=26.9230769230769, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1788472, Length=235, Percent_Identity=28.0851063829787, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1786253, Length=216, Percent_Identity=30.0925925925926, Blast_Score=77, Evalue=9e-16,
Organism=Escherichia coli, GI1786319, Length=236, Percent_Identity=30.0847457627119, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1788165, Length=209, Percent_Identity=28.7081339712919, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1788450, Length=208, Percent_Identity=27.8846153846154, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1787164, Length=209, Percent_Identity=31.5789473684211, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI48994943, Length=225, Percent_Identity=27.1111111111111, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI87081834, Length=214, Percent_Identity=30.3738317757009, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI87081782, Length=217, Percent_Identity=28.5714285714286, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI48994997, Length=229, Percent_Identity=28.82096069869, Blast_Score=72, Evalue=2e-14,
Organism=Escherichia coli, GI1787112, Length=239, Percent_Identity=28.4518828451883, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1788210, Length=222, Percent_Identity=27.4774774774775, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1789873, Length=210, Percent_Identity=25.7142857142857, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1786703, Length=206, Percent_Identity=30.5825242718447, Blast_Score=70, Evalue=8e-14,
Organism=Escherichia coli, GI1789586, Length=248, Percent_Identity=24.5967741935484, Blast_Score=70, Evalue=8e-14,
Organism=Escherichia coli, GI87081791, Length=218, Percent_Identity=25.2293577981651, Blast_Score=70, Evalue=9e-14,
Organism=Escherichia coli, GI1790739, Length=219, Percent_Identity=27.3972602739726, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1786698, Length=199, Percent_Identity=25.6281407035176, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI87081709, Length=218, Percent_Identity=25.6880733944954, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1786563, Length=222, Percent_Identity=25.6756756756757, Blast_Score=67, Evalue=7e-13,
Organism=Escherichia coli, GI1790544, Length=235, Percent_Identity=25.1063829787234, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1790467, Length=216, Percent_Identity=29.6296296296296, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI145693107, Length=221, Percent_Identity=24.8868778280543, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1787370, Length=208, Percent_Identity=25.9615384615385, Blast_Score=62, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17565586, Length=199, Percent_Identity=28.1407035175879, Blast_Score=81, Evalue=5e-16,
Organism=Caenorhabditis elegans, GI115533608, Length=215, Percent_Identity=28.3720930232558, Blast_Score=80, Evalue=6e-16,
Organism=Caenorhabditis elegans, GI17510237, Length=206, Percent_Identity=31.5533980582524, Blast_Score=77, Evalue=7e-15,
Organism=Caenorhabditis elegans, GI71983510, Length=223, Percent_Identity=28.6995515695067, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI71983523, Length=223, Percent_Identity=28.6995515695067, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI71983516, Length=223, Percent_Identity=28.6995515695067, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI71996550, Length=259, Percent_Identity=26.6409266409266, Blast_Score=74, Evalue=7e-14,
Organism=Caenorhabditis elegans, GI71996809, Length=158, Percent_Identity=31.6455696202532, Blast_Score=70, Evalue=9e-13,
Organism=Caenorhabditis elegans, GI193211015, Length=218, Percent_Identity=27.5229357798165, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI193211017, Length=158, Percent_Identity=31.6455696202532, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI71988343, Length=219, Percent_Identity=27.8538812785388, Blast_Score=67, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI17541710, Length=227, Percent_Identity=27.7533039647577, Blast_Score=64, Evalue=8e-11,
Organism=Drosophila melanogaster, GI24648314, Length=217, Percent_Identity=27.6497695852535, Blast_Score=86, Evalue=3e-17,
Organism=Drosophila melanogaster, GI24666092, Length=213, Percent_Identity=28.6384976525822, Blast_Score=83, Evalue=1e-16,
Organism=Drosophila melanogaster, GI221512771, Length=215, Percent_Identity=27.906976744186, Blast_Score=83, Evalue=1e-16,
Organism=Drosophila melanogaster, GI24643674, Length=224, Percent_Identity=28.5714285714286, Blast_Score=82, Evalue=4e-16,
Organism=Drosophila melanogaster, GI28573571, Length=217, Percent_Identity=25.3456221198157, Blast_Score=74, Evalue=8e-14,
Organism=Drosophila melanogaster, GI85725262, Length=208, Percent_Identity=26.4423076923077, Blast_Score=72, Evalue=2e-13,
Organism=Drosophila melanogaster, GI28573573, Length=206, Percent_Identity=26.2135922330097, Blast_Score=71, Evalue=5e-13,
Organism=Drosophila melanogaster, GI116007184, Length=216, Percent_Identity=25.9259259259259, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI221500365, Length=216, Percent_Identity=25.9259259259259, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24650853, Length=202, Percent_Identity=27.2277227722772, Blast_Score=67, Evalue=7e-12,
Organism=Drosophila melanogaster, GI24650855, Length=202, Percent_Identity=27.2277227722772, Blast_Score=67, Evalue=8e-12,
Organism=Drosophila melanogaster, GI24582014, Length=194, Percent_Identity=28.3505154639175, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24582012, Length=194, Percent_Identity=28.3505154639175, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI281362751, Length=205, Percent_Identity=26.8292682926829, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI28574150, Length=217, Percent_Identity=22.5806451612903, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI116007328, Length=217, Percent_Identity=22.5806451612903, Blast_Score=66, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 25756; Mature: 25625

Theoretical pI: Translated: 6.97; Mature: 6.97

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEPEILLSVRDLHAHYGESHVLHGMSFDVPRGEVVTLLGRNGVGKTTTMRSIMGIVGKR
CCCCHHEEHHHHHHHHCCCCCEECCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCC
AGSVKYQGTETIGLSSNRIARLGLAFCPEERGIFSSLSVKENMVLPPVIKPGGLSLDEVY
CCCEEECCCEEECCCCCCHHHHHHEECCCCCCCHHHCCCCCCCCCCCCCCCCCCCHHHHH
QLFPRLLERGSSQGTKLSGGEQQMLAIARILRTGADMLLLDEPTEGLAPVIVQHIGDIIR
HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHH
TLREKGFTILLVEQNFHFAATVADRHYVVEHGQVIDMIPNESLAANMDKLKSYLGV
HHHHCCCEEEEEECCCEEEEEECCCEEEEECCCEEEECCCCHHHHCHHHHHHHHCC
>Mature Secondary Structure 
AEPEILLSVRDLHAHYGESHVLHGMSFDVPRGEVVTLLGRNGVGKTTTMRSIMGIVGKR
CCCHHEEHHHHHHHHCCCCCEECCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCC
AGSVKYQGTETIGLSSNRIARLGLAFCPEERGIFSSLSVKENMVLPPVIKPGGLSLDEVY
CCCEEECCCEEECCCCCCHHHHHHEECCCCCCCHHHCCCCCCCCCCCCCCCCCCCHHHHH
QLFPRLLERGSSQGTKLSGGEQQMLAIARILRTGADMLLLDEPTEGLAPVIVQHIGDIIR
HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHH
TLREKGFTILLVEQNFHFAATVADRHYVVEHGQVIDMIPNESLAANMDKLKSYLGV
HHHHCCCEEEEEECCCEEEEEECCCEEEEECCCEEEECCCCHHHHCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; L-leucine [Periplasm]; H2O; ATP; L-valine [Periplasm]; L-iso-leucine [Periplasm] [C]

Specific reaction: ATP + L-leucine [Periplasm] + H2O = ADP + phosphate + L-leucine [Cytoplasm] ATP + L-valine [Periplasm] + H2O = ADP + phosphate + L-valine [Cytoplasm] ATP + L-iso-leucine [Periplasm] + H2O = ADP + phosphate + L-iso-leucine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2195019; 8041620; 9278503 [H]