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The map label for this gene is ydaM [H]

Identifier: 83311044

GI number: 83311044

Start: 2089563

End: 2090516

Strand: Reverse

Name: ydaM [H]

Synonym: amb1945

Alternate gene names: 83311044

Gene position: 2090516-2089563 (Counterclockwise)

Preceding gene: 83311045

Following gene: 83311043

Centisome position: 42.09

GC content: 63.84

Gene sequence:

>954_bases
ATGGAACTTTTCCGCAAGGGTCAGGGGAGCCGGATGGCGGCTGTGTCCAAACGTGCGCATGCGGCGCAGGCCGCCTGCAG
CGACGGTGCCATGGATGTCATTCCGTTTCCCATCTACGTGGTCGATGCCGGGACGCGCGAGCTGGTGAGTCTCAATCACG
CCATGCGCAGCAAGACCGGGGCAGAGCCGGGGCAGACCTGTCATAAGGCCATTTACGACCAGCCCGCCCCCTGCCATTTC
TGCCAGATCGGCGCCTTGTCGGCGCTGGGCGGGCAGGCGCCATCGACCATCGTGTTCGAACACTTCAACGACCGCGACAA
TTGCTGGTACCAGTTGAGCGAAACCCTGATCGACTGGTTCGACGGCCGCCGCGTCAAGCATTCCGTCGCCGTGGATATCG
GCGCCCTCAAGAACGCCCAGAACGAATTGTCCGAGGCCTATGCCATGTTGGCGCTGAAAAGCGTCGAATTGGAAAAGGCC
TCCATCACCGATGCCCTGACCGGGCTGTTCAACCGTCGGCGCCTGGACGAATCCTTCGCCCATGAACTGGACCGCGCCCA
GCGCTATGCCGAACCGGTCTCCCTGATCATCTCCGACGTGGACCACTTCAAGTCGGTCAACGACATTCACGGGCATCATG
TCGGCGACGAGGTGCTGCAAGCCATGGCCGGGCTGCTGCGCCACGGCGTGCGGGCCTTGGATGTGGTCGGGCGCTGGGGC
GGCGAGGAATTCCTGATCATCTGCCCGAACACCGACCTGGATGGCGCGACCGCCCTGGCGGAAAAACTGCGCGCCGCCAT
CGCCTCGGCGCAGTTCCCCGGCATCGGCACCTCGTCGGCCTCGTTCGGCGTGGCCCAGTACCAGGACGGGGAATCCTTCA
AGGATACGGTGGCACGGGCCGACACGGCGCTGTATCGTGCCAAGGTCAACGGCCGCAACCGCATAGAATACTGA

Upstream 100 bases:

>100_bases
TGGTGATGAAGGCTGTGAAGGCAGGCGCCAAGGGCTATGTCCTCAAGCCCATCAAGGCGGACAAGCTGCGTGAAATGATC
GCGCGGGTCTTCAAGGCCTG

Downstream 100 bases:

>100_bases
ACCGCCCGCCATGCTGATCGGCCAGTTCACCTTGCCCCTCGCCTTCGATCTGGCCGCCACCTTCCTGTTCGCGCTCACCG
GGGCGCTGACGGCCATGCGC

Product: response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 317; Mature: 317

Protein sequence:

>317_residues
MELFRKGQGSRMAAVSKRAHAAQAACSDGAMDVIPFPIYVVDAGTRELVSLNHAMRSKTGAEPGQTCHKAIYDQPAPCHF
CQIGALSALGGQAPSTIVFEHFNDRDNCWYQLSETLIDWFDGRRVKHSVAVDIGALKNAQNELSEAYAMLALKSVELEKA
SITDALTGLFNRRRLDESFAHELDRAQRYAEPVSLIISDVDHFKSVNDIHGHHVGDEVLQAMAGLLRHGVRALDVVGRWG
GEEFLIICPNTDLDGATALAEKLRAAIASAQFPGIGTSSASFGVAQYQDGESFKDTVARADTALYRAKVNGRNRIEY

Sequences:

>Translated_317_residues
MELFRKGQGSRMAAVSKRAHAAQAACSDGAMDVIPFPIYVVDAGTRELVSLNHAMRSKTGAEPGQTCHKAIYDQPAPCHF
CQIGALSALGGQAPSTIVFEHFNDRDNCWYQLSETLIDWFDGRRVKHSVAVDIGALKNAQNELSEAYAMLALKSVELEKA
SITDALTGLFNRRRLDESFAHELDRAQRYAEPVSLIISDVDHFKSVNDIHGHHVGDEVLQAMAGLLRHGVRALDVVGRWG
GEEFLIICPNTDLDGATALAEKLRAAIASAQFPGIGTSSASFGVAQYQDGESFKDTVARADTALYRAKVNGRNRIEY
>Mature_317_residues
MELFRKGQGSRMAAVSKRAHAAQAACSDGAMDVIPFPIYVVDAGTRELVSLNHAMRSKTGAEPGQTCHKAIYDQPAPCHF
CQIGALSALGGQAPSTIVFEHFNDRDNCWYQLSETLIDWFDGRRVKHSVAVDIGALKNAQNELSEAYAMLALKSVELEKA
SITDALTGLFNRRRLDESFAHELDRAQRYAEPVSLIISDVDHFKSVNDIHGHHVGDEVLQAMAGLLRHGVRALDVVGRWG
GEEFLIICPNTDLDGATALAEKLRAAIASAQFPGIGTSSASFGVAQYQDGESFKDTVARADTALYRAKVNGRNRIEY

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=164, Percent_Identity=43.9024390243902, Blast_Score=133, Evalue=1e-32,
Organism=Escherichia coli, GI1786584, Length=164, Percent_Identity=36.5853658536585, Blast_Score=110, Evalue=2e-25,
Organism=Escherichia coli, GI145693134, Length=192, Percent_Identity=32.2916666666667, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI87082007, Length=173, Percent_Identity=38.150289017341, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1787816, Length=293, Percent_Identity=31.0580204778157, Blast_Score=94, Evalue=9e-21,
Organism=Escherichia coli, GI1787262, Length=158, Percent_Identity=33.5443037974684, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1787802, Length=164, Percent_Identity=31.7073170731707, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1788381, Length=188, Percent_Identity=29.7872340425532, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI87081974, Length=159, Percent_Identity=29.559748427673, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI1787541, Length=156, Percent_Identity=32.6923076923077, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI87081977, Length=157, Percent_Identity=29.9363057324841, Blast_Score=68, Evalue=8e-13,
Organism=Escherichia coli, GI1787056, Length=166, Percent_Identity=28.9156626506024, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1788085, Length=164, Percent_Identity=26.8292682926829, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656 [H]

Pfam domain/function: PF00990 GGDEF; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 34561; Mature: 34561

Theoretical pI: Translated: 6.37; Mature: 6.37

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELFRKGQGSRMAAVSKRAHAAQAACSDGAMDVIPFPIYVVDAGTRELVSLNHAMRSKTG
CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCEEEEECCHHHHHHHHHHHHHCCC
AEPGQTCHKAIYDQPAPCHFCQIGALSALGGQAPSTIVFEHFNDRDNCWYQLSETLIDWF
CCCHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
DGRRVKHSVAVDIGALKNAQNELSEAYAMLALKSVELEKASITDALTGLFNRRRLDESFA
CCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HELDRAQRYAEPVSLIISDVDHFKSVNDIHGHHVGDEVLQAMAGLLRHGVRALDVVGRWG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
GEEFLIICPNTDLDGATALAEKLRAAIASAQFPGIGTSSASFGVAQYQDGESFKDTVARA
CCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
DTALYRAKVNGRNRIEY
HHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MELFRKGQGSRMAAVSKRAHAAQAACSDGAMDVIPFPIYVVDAGTRELVSLNHAMRSKTG
CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCEEEEECCHHHHHHHHHHHHHCCC
AEPGQTCHKAIYDQPAPCHFCQIGALSALGGQAPSTIVFEHFNDRDNCWYQLSETLIDWF
CCCHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
DGRRVKHSVAVDIGALKNAQNELSEAYAMLALKSVELEKASITDALTGLFNRRRLDESFA
CCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HELDRAQRYAEPVSLIISDVDHFKSVNDIHGHHVGDEVLQAMAGLLRHGVRALDVVGRWG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
GEEFLIICPNTDLDGATALAEKLRAAIASAQFPGIGTSSASFGVAQYQDGESFKDTVARA
CCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
DTALYRAKVNGRNRIEY
HHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]