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The map label for this gene is ydhM [C]

Identifier: 83310976

GI number: 83310976

Start: 2024718

End: 2025452

Strand: Reverse

Name: ydhM [C]

Synonym: amb1877

Alternate gene names: 83310976

Gene position: 2025452-2024718 (Counterclockwise)

Preceding gene: 83310986

Following gene: 83310975

Centisome position: 40.78

GC content: 61.22

Gene sequence:

>735_bases
GTGAAGCCAAGCCGCGCCCGGGCGCCTCATCCCGGCCAGCGAAAAGCTCTTGACCGATCAGTCAAGAGCACACTATTCTG
CCCGAGATGTGATTTTCTGGGACGTTTCTCCATGGGCCGCCCGTCGCCCGACACCAAGCAGATTTTGATCGATACCGCAC
TGGCACTGATCTGGATGAGCAGCTATGGCTCGGTCAGCGTCGACGACATCTGCAAGGCCGCCGGGGTCAAGAAGGGCAGC
TTCTACCACTTCTTCCCCTCCAAGGTGGATTTGGCGGTGGCGGCCATGGAACACTCGTATCATGAGGTCAAGCCGCTCTA
CGACACCATCTTCTCGCCCGACACCCCGCCCCTGAAGCGGTTCGAGCGCATGATGGAGGTGGTGATCGAGAAGCAGACCG
AGACCCTGGAAAAATACGGCCGGGTCTGCGGCTGTTCCGACACCTCGCTGGGCTGCGAGATGGCCGGGCTGGAGGAGCGC
ATCCGCGTCAAGTTCGAGGAATTGGCGAGCCGCAAGAAGCGCTACTACGAAAACGCCCTGCGCGACATGGTGGCCGAGGG
GACTCTCCCCCCCGACACCGATGTGAAGGCCAAGGCCCACGAGATTTTCGCCTATCTTCTGGGGCAGATGACCCTGGCCC
GGATTCAGAACGACCTGAACCTGCTCAAACGTGATCTGAGGCCGGGATTGTTGGGACTTCTGGGGCTCCAGGACAAGGCC
GGTTCGGCCGCCTAG

Upstream 100 bases:

>100_bases
GAAAATGTGATTGCCGGAGGTGTCTCGAAAATCAGGGACCGTTCAATCAAGGCCCCCCCCCCCCGCACTGTGCGGCAGCG
TCGGCCGAAGCCGTTTCTGC

Downstream 100 bases:

>100_bases
CGCACTATTTTGCCATTGCTTTGCCGACCGGGCGCCCTGCCGCCCGGACAAGTTGGAAAGGGGGCCGCCGCGCCCTATGC
CGCCCAAGGGCGGTATTTTT

Product: transcriptional regulator

Products: NA

Alternate protein names: ORF3 [H]

Number of amino acids: Translated: 244; Mature: 244

Protein sequence:

>244_residues
MKPSRARAPHPGQRKALDRSVKSTLFCPRCDFLGRFSMGRPSPDTKQILIDTALALIWMSSYGSVSVDDICKAAGVKKGS
FYHFFPSKVDLAVAAMEHSYHEVKPLYDTIFSPDTPPLKRFERMMEVVIEKQTETLEKYGRVCGCSDTSLGCEMAGLEER
IRVKFEELASRKKRYYENALRDMVAEGTLPPDTDVKAKAHEIFAYLLGQMTLARIQNDLNLLKRDLRPGLLGLLGLQDKA
GSAA

Sequences:

>Translated_244_residues
MKPSRARAPHPGQRKALDRSVKSTLFCPRCDFLGRFSMGRPSPDTKQILIDTALALIWMSSYGSVSVDDICKAAGVKKGS
FYHFFPSKVDLAVAAMEHSYHEVKPLYDTIFSPDTPPLKRFERMMEVVIEKQTETLEKYGRVCGCSDTSLGCEMAGLEER
IRVKFEELASRKKRYYENALRDMVAEGTLPPDTDVKAKAHEIFAYLLGQMTLARIQNDLNLLKRDLRPGLLGLLGLQDKA
GSAA
>Mature_244_residues
MKPSRARAPHPGQRKALDRSVKSTLFCPRCDFLGRFSMGRPSPDTKQILIDTALALIWMSSYGSVSVDDICKAAGVKKGS
FYHFFPSKVDLAVAAMEHSYHEVKPLYDTIFSPDTPPLKRFERMMEVVIEKQTETLEKYGRVCGCSDTSLGCEMAGLEER
IRVKFEELASRKKRYYENALRDMVAEGTLPPDTDVKAKAHEIFAYLLGQMTLARIQNDLNLLKRDLRPGLLGLLGLQDKA
GSAA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 27323; Mature: 27323

Theoretical pI: Translated: 8.97; Mature: 8.97

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
6.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCCC
>Mature Secondary Structure
MKPSRARAPHPGQRKALDRSVKSTLFCPRCDFLGRFSMGRPSPDTKQILIDTALALIWMS
CCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH
SYGSVSVDDICKAAGVKKGSFYHFFPSKVDLAVAAMEHSYHEVKPLYDTIFSPDTPPLKR
CCCCCCHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
FERMMEVVIEKQTETLEKYGRVCGCSDTSLGCEMAGLEERIRVKFEELASRKKRYYENAL
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RDMVAEGTLPPDTDVKAKAHEIFAYLLGQMTLARIQNDLNLLKRDLRPGLLGLLGLQDKA
HHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCCC
GSAA
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1339371 [H]