| Definition | Magnetospirillum magneticum AMB-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007626 |
| Length | 4,967,148 |
Click here to switch to the map view.
The map label for this gene is ytfP [H]
Identifier: 83310722
GI number: 83310722
Start: 1752492
End: 1753688
Strand: Reverse
Name: ytfP [H]
Synonym: amb1623
Alternate gene names: 83310722
Gene position: 1753688-1752492 (Counterclockwise)
Preceding gene: 83310724
Following gene: 83310721
Centisome position: 35.31
GC content: 69.59
Gene sequence:
>1197_bases ATGAGGGCCATCGTCATAGGAGCGGGGCCAGCGGGTCTGATGGCCGCCGAAGTAATGGCGTCCCATGGGCTGAAGGTCGA GATATTCGACGCCATGGCCTCGCCCGGACGCAAGTTTCTGCTGGCCGGCAAGGGGGGGCTCAACCTGACCCATTCCGAGC CGCCGGAACGCTTCGTCACCCGCTATGGCACCGCCGCCGGCTTCATGGCGCCGCTGCTGGCCCAATTCGGCGCCGACCCG TTGCGCGCCTGGGCCGAGGGATTGGGCGTCAGCACTTTCGTCGGCTCGTCCGGCCGAGTGTTCCCCGCCGAAATGAAGGC CGCTCCGCTGCTGCGGGCCTGGATGCGCCGCCTGCGCGGCCTGGGCGTTGTGCTCCACACCCGGCGCCGCTGGCTGGGCT GGGACGACCACAACCATCTGCGCTTCGCCGGGCCGGAGGGGGAGGAGACGGTCGACGCCAAGGTCTGCGTCCTGGCCTTG GGTGGCGCCTCGTGGCCGAACCTGGGGTCGGATGGCGGCTGGGCTCCCATCCTGGCGGCCAAAGGCATCGCCATCACGCC ACTCAAGCCCGCCAATTGCGGCTTTGACCTGGACTGGAGCCCCAGCTTCGCCGAGCGCTTCGCCGGCGGCCGCACCGGCA CGGTGGAGCTGACCTTCAAGGGCCAGAAGCGGCGCGGCGAAGTCACTGTCACCGCCACCGGCATCGAGGGCGGCGCCGTC TACGCCCTGTCGGCGGAGTTGCGCGATGCCCTGGCCGAAGAGGGCCAGGCGGAATTGCTGGTAGACCTGATGCCGGACTG GAGCCCGGCCAAAGTGGCGGCGGCCCTTGGGCGGCCGCGCGGCTCGCGCTCGCTCTCCACCTTTCTGAAGAAGGCCCTGC CGCTCAATCCCATGGCGCTGGGGCTGCTGCGCGAAGCATGTTCCGCCTCCGAGCCGGGCGCTCTGGCCAAGGCGATCAAG GCCCTTCCGCTTCGCCTCAAGCGCCCCCGCCCCCTGGCCGAAGCCATCTCCACCGCGGGCGGCATCGGGCTGGCGGAACT GGATGACGGAATGATGCTGAAAGCCTTGCCGGGCGTATGGGTTGCCGGTGAAATGCTGGACTGGGAAGCCCCCACCGGGG GCTACCTGCTGACGGGCTGCTTCGCCACCGGTGTCGCGGCGGGACTGGGGGTCCTGCAGCGATGTAACTCTCTGTAA
Upstream 100 bases:
>100_bases CGGCAAGACGCGTGGTCGGGCACGGACATCGGGGGCTTCCCTTGCGATTTTCCCCGTCATCATGGGGAGATTCCTCCTCT CGGGCAAGGGGTGCGCAAGC
Downstream 100 bases:
>100_bases CAAAAACGCCGATTTTTCTTCTGCCTTGCAACATGACTGAGGTAGGGTGTGCCCGTCCAATAGGGGACCTCTTACACAAG TCGTCAGCTACTGTATTCAT
Product: flavoprotein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 398; Mature: 398
Protein sequence:
>398_residues MRAIVIGAGPAGLMAAEVMASHGLKVEIFDAMASPGRKFLLAGKGGLNLTHSEPPERFVTRYGTAAGFMAPLLAQFGADP LRAWAEGLGVSTFVGSSGRVFPAEMKAAPLLRAWMRRLRGLGVVLHTRRRWLGWDDHNHLRFAGPEGEETVDAKVCVLAL GGASWPNLGSDGGWAPILAAKGIAITPLKPANCGFDLDWSPSFAERFAGGRTGTVELTFKGQKRRGEVTVTATGIEGGAV YALSAELRDALAEEGQAELLVDLMPDWSPAKVAAALGRPRGSRSLSTFLKKALPLNPMALGLLREACSASEPGALAKAIK ALPLRLKRPRPLAEAISTAGGIGLAELDDGMMLKALPGVWVAGEMLDWEAPTGGYLLTGCFATGVAAGLGVLQRCNSL
Sequences:
>Translated_398_residues MRAIVIGAGPAGLMAAEVMASHGLKVEIFDAMASPGRKFLLAGKGGLNLTHSEPPERFVTRYGTAAGFMAPLLAQFGADP LRAWAEGLGVSTFVGSSGRVFPAEMKAAPLLRAWMRRLRGLGVVLHTRRRWLGWDDHNHLRFAGPEGEETVDAKVCVLAL GGASWPNLGSDGGWAPILAAKGIAITPLKPANCGFDLDWSPSFAERFAGGRTGTVELTFKGQKRRGEVTVTATGIEGGAV YALSAELRDALAEEGQAELLVDLMPDWSPAKVAAALGRPRGSRSLSTFLKKALPLNPMALGLLREACSASEPGALAKAIK ALPLRLKRPRPLAEAISTAGGIGLAELDDGMMLKALPGVWVAGEMLDWEAPTGGYLLTGCFATGVAAGLGVLQRCNSL >Mature_398_residues MRAIVIGAGPAGLMAAEVMASHGLKVEIFDAMASPGRKFLLAGKGGLNLTHSEPPERFVTRYGTAAGFMAPLLAQFGADP LRAWAEGLGVSTFVGSSGRVFPAEMKAAPLLRAWMRRLRGLGVVLHTRRRWLGWDDHNHLRFAGPEGEETVDAKVCVLAL GGASWPNLGSDGGWAPILAAKGIAITPLKPANCGFDLDWSPSFAERFAGGRTGTVELTFKGQKRRGEVTVTATGIEGGAV YALSAELRDALAEEGQAELLVDLMPDWSPAKVAAALGRPRGSRSLSTFLKKALPLNPMALGLLREACSASEPGALAKAIK ALPLRLKRPRPLAEAISTAGGIGLAELDDGMMLKALPGVWVAGEMLDWEAPTGGYLLTGCFATGVAAGLGVLQRCNSL
Specific function: Unknown
COG id: COG2081
COG function: function code R; Predicted flavoproteins
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004792 - InterPro: IPR013027 [H]
Pfam domain/function: PF03486 HI0933_like [H]
EC number: NA
Molecular weight: Translated: 41696; Mature: 41696
Theoretical pI: Translated: 9.28; Mature: 9.28
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRAIVIGAGPAGLMAAEVMASHGLKVEIFDAMASPGRKFLLAGKGGLNLTHSEPPERFVT CEEEEEECCCHHHHHHHHHHHCCCEEEEEHHHCCCCCEEEEECCCCCCCCCCCCHHHHHH RYGTAAGFMAPLLAQFGADPLRAWAEGLGVSTFVGSSGRVFPAEMKAAPLLRAWMRRLRG HHCCHHHHHHHHHHHHCCCHHHHHHHHCCCEEEECCCCCEEHHHHHHHHHHHHHHHHHHC LGVVLHTRRRWLGWDDHNHLRFAGPEGEETVDAKVCVLALGGASWPNLGSDGGWAPILAA CCEEEECHHHHCCCCCCCCEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHC KGIAITPLKPANCGFDLDWSPSFAERFAGGRTGTVELTFKGQKRRGEVTVTATGIEGGAV CCEEEECCCCCCCCCCCCCCCHHHHHHCCCCCCEEEEEECCCCCCCCEEEEEECCCCCEE YALSAELRDALAEEGQAELLVDLMPDWSPAKVAAALGRPRGSRSLSTFLKKALPLNPMAL EEEHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHH GLLREACSASEPGALAKAIKALPLRLKRPRPLAEAISTAGGIGLAELDDGMMLKALPGVW HHHHHHHCCCCCHHHHHHHHHHCHHCCCCCCHHHHHHHCCCCCEEECCCCEEEECCCCCE VAGEMLDWEAPTGGYLLTGCFATGVAAGLGVLQRCNSL EECCEECCCCCCCCEEHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MRAIVIGAGPAGLMAAEVMASHGLKVEIFDAMASPGRKFLLAGKGGLNLTHSEPPERFVT CEEEEEECCCHHHHHHHHHHHCCCEEEEEHHHCCCCCEEEEECCCCCCCCCCCCHHHHHH RYGTAAGFMAPLLAQFGADPLRAWAEGLGVSTFVGSSGRVFPAEMKAAPLLRAWMRRLRG HHCCHHHHHHHHHHHHCCCHHHHHHHHCCCEEEECCCCCEEHHHHHHHHHHHHHHHHHHC LGVVLHTRRRWLGWDDHNHLRFAGPEGEETVDAKVCVLALGGASWPNLGSDGGWAPILAA CCEEEECHHHHCCCCCCCCEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHC KGIAITPLKPANCGFDLDWSPSFAERFAGGRTGTVELTFKGQKRRGEVTVTATGIEGGAV CCEEEECCCCCCCCCCCCCCCHHHHHHCCCCCCEEEEEECCCCCCCCEEEEEECCCCCEE YALSAELRDALAEEGQAELLVDLMPDWSPAKVAAALGRPRGSRSLSTFLKKALPLNPMAL EEEHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHH GLLREACSASEPGALAKAIKALPLRLKRPRPLAEAISTAGGIGLAELDDGMMLKALPGVW HHHHHHHCCCCCHHHHHHHHHHCHHCCCCCCHHHHHHHCCCCCEEECCCCEEEECCCCCE VAGEMLDWEAPTGGYLLTGCFATGVAAGLGVLQRCNSL EECCEECCCCCCCCEEHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9387221; 9384377 [H]